Wall clock time and date at job start Tue Mar 31 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34487 * 125.57148 * 2 1 4 4 C 1.46680 * 106.33137 * 180.02562 * 3 2 1 5 5 C 1.47259 * 126.94372 * 179.97438 * 4 3 2 6 6 O 1.21630 * 120.00372 * 179.97438 * 5 4 3 7 7 N 1.34778 * 120.00020 * 359.97438 * 5 4 3 8 8 C 1.46498 * 120.00392 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47020 * 179.97438 * 8 7 5 10 10 N 1.46503 * 109.46968 * 179.97438 * 9 8 7 11 11 C 1.36933 * 120.00162 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.38817 * 120.00300 * 180.02562 * 11 10 9 14 14 N 1.31620 * 120.00074 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99827 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46981 * 89.99750 * 15 13 11 17 17 H 1.48500 * 109.47319 * 210.00057 * 15 13 11 18 18 H 1.48502 * 109.47173 * 330.00320 * 15 13 11 19 19 C 1.36777 * 106.11574 * 359.75003 * 4 3 2 20 20 C 1.50700 * 125.79945 * 180.24350 * 19 4 3 21 21 N 1.34657 * 108.39515 * 0.41095 * 19 4 3 22 22 C 1.46499 * 124.84751 * 179.83786 * 21 19 4 23 23 C 1.53003 * 109.46565 * 245.98329 * 22 21 19 24 24 C 1.52998 * 109.47219 * 125.98613 * 22 21 19 25 25 H 1.08998 * 109.47169 * 274.92749 * 1 2 3 26 26 H 1.09003 * 109.47291 * 34.92789 * 1 2 3 27 27 H 1.09000 * 109.47047 * 154.93117 * 1 2 3 28 28 H 1.08003 * 126.82964 * 0.02562 * 3 2 1 29 29 H 0.97009 * 119.99632 * 359.97438 * 7 5 4 30 30 H 1.09005 * 109.46933 * 299.99282 * 8 7 5 31 31 H 1.08992 * 109.47291 * 59.99322 * 8 7 5 32 32 H 1.09000 * 109.47389 * 299.99460 * 9 8 7 33 33 H 1.08997 * 109.47544 * 60.00033 * 9 8 7 34 34 H 0.97005 * 119.99824 * 0.02562 * 10 9 8 35 35 H 0.96996 * 119.99582 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.47031 * 270.19288 * 20 19 4 37 37 H 1.09000 * 109.47417 * 30.19439 * 20 19 4 38 38 H 1.08998 * 109.46954 * 150.19420 * 20 19 4 39 39 H 1.08999 * 109.47444 * 5.98078 * 22 21 19 40 40 H 1.08997 * 109.47141 * 293.84266 * 23 22 21 41 41 H 1.09002 * 109.47384 * 53.84934 * 23 22 21 42 42 H 1.09003 * 109.46779 * 173.85137 * 23 22 21 43 43 H 1.08999 * 109.47350 * 59.99407 * 24 22 21 44 44 H 1.09003 * 109.47142 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.46941 * 299.99475 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8977 1.4301 -0.0014 6 8 5.9892 0.8935 -0.0014 7 7 4.8080 2.7749 -0.0021 8 6 6.0251 3.5903 -0.0023 9 6 5.6459 5.0725 -0.0037 10 7 6.8630 5.8879 -0.0033 11 6 6.7719 7.2542 -0.0050 12 1 5.8027 7.7308 -0.0062 13 6 7.9251 8.0269 -0.0051 14 7 7.8374 9.3401 -0.0072 15 14 9.6014 7.2027 -0.0037 16 1 10.0462 6.9832 -1.4035 17 1 10.5804 8.0729 0.6960 18 1 9.5104 5.8967 0.6973 19 6 3.5997 -0.7552 0.0048 20 6 4.7721 -1.7020 0.0115 21 7 2.3007 -1.1099 -0.0007 22 6 1.8098 -2.4902 -0.0008 23 6 1.0919 -2.7759 -1.3214 24 6 0.8350 -2.6850 1.1622 25 1 -0.3633 0.0883 1.0238 26 1 -0.3634 0.8426 -0.5884 27 1 -0.3633 -0.9309 -0.4354 28 1 1.9628 2.1234 0.0004 29 1 3.9374 3.2029 -0.0025 30 1 6.6127 3.3661 0.8881 31 1 6.6131 3.3651 -0.8919 32 1 5.0585 5.2965 -0.8942 33 1 5.0577 5.2980 0.8858 34 1 7.7335 5.4599 -0.0026 35 1 8.6433 9.8800 -0.0069 36 1 5.0594 -1.9318 -1.0146 37 1 5.6116 -1.2371 0.5285 38 1 4.4932 -2.6219 0.5254 39 1 2.6505 -3.1748 0.1111 40 1 0.1894 -2.1678 -1.3833 41 1 1.7520 -2.5324 -2.1540 42 1 0.8227 -3.8311 -1.3677 43 1 -0.0057 -2.0003 1.0502 44 1 0.4694 -3.7119 1.1617 45 1 1.3465 -2.4814 2.1029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150510208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:55 Heat of formation + Delta-G solvation = 14.866370 kcal Electronic energy + Delta-G solvation = -23176.360240 eV Core-core repulsion = 19808.830206 eV Total energy + Delta-G solvation = -3367.530034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82748 -39.02206 -35.83835 -35.55047 -33.82484 -32.93888 -31.40934 -30.19679 -29.39518 -27.93376 -27.84987 -25.05570 -23.70472 -22.57292 -21.74272 -21.35575 -19.59715 -18.71405 -17.64685 -16.88085 -16.22521 -15.72347 -15.47348 -15.05493 -14.96278 -14.35436 -13.99241 -13.81046 -13.71140 -13.63782 -13.58705 -13.51775 -13.20222 -12.80289 -12.66821 -12.64297 -12.57032 -12.38882 -12.21079 -11.72955 -11.67213 -11.43934 -11.41495 -11.10025 -10.84079 -10.79634 -10.10826 -9.64906 -9.55956 -8.93830 -8.83636 -8.61944 -8.08431 -7.24295 -5.75320 -3.11981 1.73470 2.24472 2.48802 3.42562 3.46876 3.48925 3.58630 3.71323 4.05327 4.36072 4.36640 4.50475 4.62264 4.62423 4.78992 4.94628 5.03854 5.05051 5.12933 5.17393 5.21849 5.25338 5.38495 5.44637 5.48724 5.51614 5.53474 5.58013 5.69371 5.71779 5.77254 5.78392 5.89141 6.07008 6.17016 6.56716 6.69145 6.69798 6.81477 6.98033 7.10489 7.85403 7.99190 8.43032 8.57084 9.21312 9.93685 10.12748 11.42677 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.002629 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.650998 B =10646.754746 C =11270.968916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.013 3.987 3 C -0.165 4.165 4 C -0.230 4.230 5 C 0.589 3.411 6 O -0.556 6.556 7 N -0.719 5.719 8 C 0.110 3.890 9 C 0.148 3.852 10 N -0.753 5.753 11 C -0.246 4.246 12 H 0.091 0.909 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.275 1.275 19 C 0.103 3.897 20 C -0.093 4.093 21 N -0.433 5.433 22 C 0.120 3.880 23 C -0.168 4.168 24 C -0.172 4.172 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.400 0.600 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 -28.855 -0.018 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.189 4.189 4 C -0.240 4.240 5 C 0.378 3.622 6 O -0.436 6.436 7 N -0.370 5.370 8 C -0.014 4.014 9 C 0.021 3.979 10 N -0.399 5.399 11 C -0.376 4.376 12 H 0.109 0.891 13 C -0.191 4.191 14 N -0.581 5.581 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.201 1.201 19 C -0.013 4.013 20 C -0.150 4.150 21 N -0.111 5.111 22 C 0.018 3.982 23 C -0.226 4.226 24 C -0.229 4.229 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.234 0.766 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.904 -29.298 -0.019 34.336 hybrid contribution 0.793 -0.124 0.002 0.803 sum -17.110 -29.423 -0.016 34.036 Atomic orbital electron populations 1.20577 0.88274 1.03166 1.02693 1.20059 0.93368 0.85476 1.10536 1.21794 0.90905 0.97653 1.08592 1.20090 0.92897 0.92112 1.18870 1.17328 0.87684 0.81607 0.75581 1.90720 1.28753 1.72480 1.51684 1.45651 1.10047 1.05813 1.75472 1.21536 0.86642 0.90943 1.02240 1.20733 0.90693 0.87286 0.99223 1.42545 1.02270 1.03794 1.91315 1.19022 0.95041 0.80100 1.43395 0.89105 1.24674 0.97411 0.95182 1.01815 1.69703 1.27917 1.03100 1.57368 0.86535 0.85295 0.78776 0.77916 1.20948 1.21652 1.20116 1.20246 0.84596 0.94045 1.02413 1.20559 0.94835 0.96327 1.03271 1.43740 1.04878 1.05857 1.56611 1.21479 0.98571 0.81157 0.96970 1.22295 1.01398 1.02705 0.96162 1.22336 0.99767 1.03222 0.97597 0.91020 0.90257 0.91245 0.83757 0.76601 0.91527 0.91520 0.94922 0.94974 0.80402 0.93005 0.90638 0.87978 0.92239 0.88200 0.91184 0.91586 0.90670 0.90750 0.90651 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 8.50 36.01 0.31 -0.23 16 2 C 0.01 0.12 6.37 -81.87 -0.52 -0.40 16 3 C -0.17 -1.85 10.45 -37.50 -0.39 -2.24 16 4 C -0.23 -3.13 6.29 -103.35 -0.65 -3.78 16 5 C 0.59 9.57 7.81 -12.59 -0.10 9.47 16 6 O -0.56 -10.59 14.82 5.25 0.08 -10.51 16 7 N -0.72 -10.92 5.55 -61.44 -0.34 -11.26 16 8 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 9 C 0.15 2.93 6.37 -4.04 -0.03 2.90 16 10 N -0.75 -18.56 5.41 -59.91 -0.32 -18.88 16 11 C -0.25 -7.12 10.47 -15.06 -0.16 -7.28 16 12 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 14 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 15 Si 0.88 22.68 27.74 -169.99 -4.71 17.97 16 16 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 19 C 0.10 1.22 6.89 -81.88 -0.56 0.66 16 20 C -0.09 -0.95 9.38 36.01 0.34 -0.62 16 21 N -0.43 -4.01 2.57 -100.94 -0.26 -4.26 16 22 C 0.12 0.72 3.30 -67.93 -0.22 0.49 16 23 C -0.17 -0.80 9.20 37.16 0.34 -0.46 16 24 C -0.17 -0.80 9.06 37.16 0.34 -0.46 16 25 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.32 4.19 -51.93 -0.22 0.11 16 28 H 0.14 1.36 7.70 -52.48 -0.40 0.96 16 29 H 0.40 5.08 7.60 -40.82 -0.31 4.77 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.36 8.80 5.53 -40.82 -0.23 8.58 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.29 6.48 -51.93 -0.34 0.95 16 38 H 0.06 0.45 6.87 -51.93 -0.36 0.09 16 39 H 0.10 0.53 6.44 -51.93 -0.33 0.19 16 40 H 0.07 0.32 5.53 -51.93 -0.29 0.03 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.33 4.95 -51.93 -0.26 0.07 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -35.43 357.16 -7.79 -43.22 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.96 Total: 7.26 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.43 Total: 0.03 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.15 Total: -63.35 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.43 -7.79 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150510208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.088 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds