Wall clock time and date at job start Tue Mar 31 2020 07:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99590 * 294.29666 * 10 9 7 12 12 C 1.53240 * 109.33953 * 172.74375 * 11 10 9 13 13 N 1.47081 * 108.51861 * 53.83314 * 12 11 10 14 14 C 1.34774 * 120.88436 * 128.83523 * 13 12 11 15 15 O 1.21285 * 120.00386 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99810 * 359.97438 * 14 13 12 17 17 C 1.53969 * 113.57791 * 277.74837 * 16 14 13 18 18 C 1.52809 * 86.74388 * 220.73828 * 17 16 14 19 19 C 1.52963 * 121.28952 * 150.89290 * 18 17 16 20 20 N 1.48155 * 85.82971 * 102.34663 * 19 18 17 21 21 C 1.48162 * 91.00110 * 23.92627 * 20 19 18 22 22 C 1.52799 * 88.15928 * 24.83586 * 18 17 16 23 23 C 1.47086 * 118.23762 * 308.81698 * 13 12 11 24 24 C 1.46901 * 110.99992 * 169.99976 * 10 9 7 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08997 * 109.49497 * 292.70952 * 11 10 9 29 29 H 1.09001 * 109.49495 * 52.79205 * 11 10 9 30 30 H 1.08995 * 109.63347 * 294.12732 * 12 11 10 31 31 H 1.08997 * 109.79057 * 173.63460 * 12 11 10 32 32 H 1.09003 * 112.82062 * 48.92435 * 16 14 13 33 33 H 1.08998 * 113.66718 * 335.20140 * 17 16 14 34 34 H 1.09000 * 113.67060 * 106.27759 * 17 16 14 35 35 H 1.09001 * 113.81054 * 216.57754 * 19 18 17 36 36 H 1.08997 * 113.81304 * 348.12136 * 19 18 17 37 37 H 1.00910 * 110.99939 * 136.91647 * 20 19 18 38 38 H 1.08998 * 113.81833 * 221.84174 * 21 20 19 39 39 H 1.09007 * 113.81660 * 90.29324 * 21 20 19 40 40 H 1.09006 * 113.66940 * 220.70376 * 22 18 17 41 41 H 1.08997 * 113.67257 * 89.62763 * 22 18 17 42 42 H 1.09002 * 109.62302 * 291.47027 * 23 13 12 43 43 H 1.08998 * 109.78787 * 170.98805 * 23 13 12 44 44 H 1.09004 * 109.49356 * 307.20898 * 24 10 9 45 45 H 1.09001 * 109.49423 * 67.29219 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 2.9768 -3.6554 -1.2318 12 6 4.0791 -4.7134 -1.1146 13 7 3.4619 -5.9899 -0.7238 14 6 3.7125 -7.1197 -1.4146 15 8 3.1952 -8.1637 -1.0780 16 6 4.6356 -7.0856 -2.6053 17 6 3.9512 -6.6154 -3.9019 18 6 4.7451 -7.7094 -4.6146 19 6 4.2084 -8.3860 -5.8772 20 7 5.1553 -7.5174 -6.6146 21 6 6.0092 -7.3825 -5.4114 22 6 4.8168 -8.4561 -3.2834 23 6 2.5640 -6.0009 0.4412 24 6 1.5214 -4.8922 0.2628 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.3149 -3.9098 -2.0595 29 1 3.4273 -2.6794 -1.4125 30 1 4.8004 -4.4083 -0.3565 31 1 4.5832 -4.8290 -2.0741 32 1 5.5756 -6.5746 -2.3971 33 1 2.8737 -6.7794 -3.9122 34 1 4.2304 -5.6056 -4.2027 35 1 4.4442 -9.4483 -5.9413 36 1 3.1603 -8.1678 -6.0818 37 1 5.6307 -8.0341 -7.3393 38 1 6.3834 -6.3718 -5.2482 39 1 6.7862 -8.1433 -5.3355 40 1 5.7867 -8.9148 -3.0907 41 1 3.9834 -9.1391 -3.1193 42 1 3.1398 -5.8196 1.3488 43 1 2.0633 -6.9664 0.5121 44 1 0.9163 -4.8132 1.1660 45 1 0.8798 -5.1294 -0.5859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160483349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:57 Heat of formation + Delta-G solvation = 27.614199 kcal Electronic energy + Delta-G solvation = -24205.094590 eV Core-core repulsion = 20838.117343 eV Total energy + Delta-G solvation = -3366.977246 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26875 -39.59742 -37.64729 -35.61278 -34.55675 -32.59102 -30.93940 -28.33263 -26.87782 -26.41615 -26.03925 -25.09259 -23.51856 -22.95058 -21.85132 -20.41988 -18.56764 -18.41719 -17.48984 -16.78534 -16.52359 -16.00380 -15.46173 -15.17321 -14.73804 -14.58631 -14.35178 -13.98523 -13.74719 -13.67826 -13.52029 -13.18710 -12.79882 -12.56232 -12.31002 -11.95731 -11.85447 -11.73520 -11.37912 -11.33903 -11.03948 -10.87256 -10.72174 -10.65102 -10.59072 -10.52501 -10.39431 -10.12410 -9.55463 -9.23130 -8.83316 -8.45853 -8.42139 -7.45031 -6.41865 -4.11728 2.65068 3.07570 3.41620 3.44439 3.60253 3.68875 3.99501 4.14074 4.33467 4.46109 4.47286 4.66419 4.76155 4.93269 4.96421 5.06750 5.24461 5.27758 5.30347 5.36131 5.40981 5.46897 5.50786 5.55309 5.57209 5.62732 5.68591 5.74554 5.74897 5.81712 5.94789 5.96637 6.09879 6.17241 6.34897 6.38617 6.62309 6.87969 6.91784 7.00324 7.51201 7.68801 7.86796 8.23136 8.24483 8.50833 8.80828 9.59487 10.97248 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.003576 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.896443 B = 7828.665265 C = 8748.704721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.590 4.590 8 H 0.058 0.942 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.110 3.890 13 N -0.606 5.606 14 C 0.523 3.477 15 O -0.552 6.552 16 C -0.135 4.135 17 C -0.088 4.088 18 C -0.112 4.112 19 C 0.018 3.982 20 N -0.634 5.634 21 C 0.028 3.972 22 C -0.104 4.104 23 C 0.118 3.882 24 C 0.040 3.960 25 H 0.267 0.733 26 H 0.021 0.979 27 H -0.019 1.019 28 H 0.024 0.976 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.317 0.683 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -16.004 -8.939 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.254 5.254 11 C -0.078 4.078 12 C -0.013 4.013 13 N -0.339 5.339 14 C 0.312 3.688 15 O -0.431 6.431 16 C -0.156 4.156 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.112 4.112 20 N -0.258 5.258 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.005 4.005 24 C -0.090 4.090 25 H 0.077 0.923 26 H 0.039 0.961 27 H -0.002 1.002 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.368 -14.055 -8.501 19.976 hybrid contribution 0.034 -2.559 -0.428 2.595 sum 11.402 -16.614 -8.929 22.040 Atomic orbital electron populations 1.70770 1.06938 1.30460 1.46780 1.25863 0.96470 1.02761 0.93834 0.83451 0.74549 0.74856 0.76812 1.21405 1.21413 1.21088 1.21965 0.94784 0.90852 1.55276 0.92360 1.19832 0.90644 0.88818 0.94917 1.61988 1.27584 1.02386 1.33430 1.22321 0.95132 0.99203 0.91100 1.22005 0.96156 0.82570 1.00528 1.48233 1.46791 1.08627 1.30199 1.20445 0.81845 0.83049 0.83481 1.90645 1.52695 1.30565 1.69150 1.22743 0.99538 1.00398 0.92893 1.22515 0.99638 0.98551 0.91853 1.22841 0.97103 0.98152 0.93171 1.23558 0.99277 0.95795 0.92545 1.66927 1.12170 1.40258 1.06452 1.23478 0.94243 1.02410 0.90044 1.22723 1.03183 0.95286 0.92971 1.21719 0.91750 0.99320 0.87705 1.22430 0.95086 0.90666 1.00782 0.92274 0.96058 1.00175 0.95735 0.88346 0.90688 0.89980 0.86981 0.89265 0.89932 0.91326 0.89260 0.87097 0.89065 0.91222 0.90913 0.88281 0.90973 0.89418 0.90191 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.65 55.43 0.76 -26.69 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.08 24.74 29.90 -169.99 -5.08 19.66 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.59 -16.18 8.41 -34.44 -0.29 -16.47 16 8 H 0.06 1.58 7.13 -52.49 -0.37 1.21 16 9 C 0.18 4.63 4.04 -4.98 -0.02 4.61 16 10 N -0.53 -11.00 4.62 -235.76 -1.09 -12.09 16 11 C 0.05 0.94 5.46 -3.70 -0.02 0.91 16 12 C 0.11 1.55 6.46 -3.60 -0.02 1.53 16 13 N -0.61 -9.05 3.01 -172.46 -0.52 -9.57 16 14 C 0.52 7.62 7.23 -10.99 -0.08 7.54 16 15 O -0.55 -9.68 15.35 5.55 0.09 -9.60 16 16 C -0.13 -1.45 2.73 -90.77 -0.25 -1.70 16 17 C -0.09 -0.91 6.95 -26.32 -0.18 -1.10 16 18 C -0.11 -0.99 1.26 -154.88 -0.19 -1.18 16 19 C 0.02 0.15 8.67 -3.15 -0.03 0.13 16 20 N -0.63 -5.43 8.53 -121.56 -1.04 -6.46 16 21 C 0.03 0.22 8.67 -3.15 -0.03 0.19 16 22 C -0.10 -1.00 7.18 -26.33 -0.19 -1.19 16 23 C 0.12 1.85 6.59 -3.60 -0.02 1.82 16 24 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 25 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 26 H 0.02 0.57 7.84 -51.92 -0.41 0.16 16 27 H -0.02 -0.52 7.99 -51.93 -0.41 -0.94 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.93 5.51 -51.93 -0.29 0.64 16 32 H 0.11 1.02 7.54 -51.93 -0.39 0.63 16 33 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 34 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.32 2.13 8.92 -39.29 -0.35 1.78 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.12 7.42 -51.93 -0.39 0.74 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.37 7.07 -51.93 -0.37 1.00 16 44 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -32.03 351.72 -10.50 -42.52 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.47 Total: 0.84 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.44 Total: -3.90 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.89 Total: -54.82 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.03 -10.50 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160483349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.136 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds