Wall clock time and date at job start Tue Mar 31 2020 07:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99590 * 294.29666 * 10 9 7 12 12 C 1.53240 * 109.33953 * 172.74375 * 11 10 9 13 13 N 1.47081 * 108.51861 * 53.83314 * 12 11 10 14 14 C 1.34774 * 120.88436 * 128.83523 * 13 12 11 15 15 O 1.21285 * 120.00386 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99810 * 359.97438 * 14 13 12 17 17 C 1.53969 * 113.57791 * 277.74837 * 16 14 13 18 18 C 1.52809 * 86.74388 * 220.73828 * 17 16 14 19 19 C 1.52963 * 121.28952 * 150.89290 * 18 17 16 20 20 N 1.48155 * 85.82971 * 102.34663 * 19 18 17 21 21 C 1.48162 * 91.00110 * 23.92627 * 20 19 18 22 22 C 1.52799 * 88.15928 * 24.83586 * 18 17 16 23 23 C 1.47086 * 118.23762 * 308.81698 * 13 12 11 24 24 C 1.46901 * 110.99992 * 169.99976 * 10 9 7 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08997 * 109.49497 * 292.70952 * 11 10 9 29 29 H 1.09001 * 109.49495 * 52.79205 * 11 10 9 30 30 H 1.08995 * 109.63347 * 294.12732 * 12 11 10 31 31 H 1.08997 * 109.79057 * 173.63460 * 12 11 10 32 32 H 1.09003 * 112.82062 * 48.92435 * 16 14 13 33 33 H 1.08998 * 113.66718 * 335.20140 * 17 16 14 34 34 H 1.09000 * 113.67060 * 106.27759 * 17 16 14 35 35 H 1.09001 * 113.81054 * 216.57754 * 19 18 17 36 36 H 1.08997 * 113.81304 * 348.12136 * 19 18 17 37 37 H 1.00910 * 110.99939 * 136.91647 * 20 19 18 38 38 H 1.08998 * 113.81833 * 221.84174 * 21 20 19 39 39 H 1.09007 * 113.81660 * 90.29324 * 21 20 19 40 40 H 1.09006 * 113.66940 * 220.70376 * 22 18 17 41 41 H 1.08997 * 113.67257 * 89.62763 * 22 18 17 42 42 H 1.09002 * 109.62302 * 291.47027 * 23 13 12 43 43 H 1.08998 * 109.78787 * 170.98805 * 23 13 12 44 44 H 1.09004 * 109.49356 * 307.20898 * 24 10 9 45 45 H 1.09001 * 109.49423 * 67.29219 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 2.9768 -3.6554 -1.2318 12 6 4.0791 -4.7134 -1.1146 13 7 3.4619 -5.9899 -0.7238 14 6 3.7125 -7.1197 -1.4146 15 8 3.1952 -8.1637 -1.0780 16 6 4.6356 -7.0856 -2.6053 17 6 3.9512 -6.6154 -3.9019 18 6 4.7451 -7.7094 -4.6146 19 6 4.2084 -8.3860 -5.8772 20 7 5.1553 -7.5174 -6.6146 21 6 6.0092 -7.3825 -5.4114 22 6 4.8168 -8.4561 -3.2834 23 6 2.5640 -6.0009 0.4412 24 6 1.5214 -4.8922 0.2628 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.3149 -3.9098 -2.0595 29 1 3.4273 -2.6794 -1.4125 30 1 4.8004 -4.4083 -0.3565 31 1 4.5832 -4.8290 -2.0741 32 1 5.5756 -6.5746 -2.3971 33 1 2.8737 -6.7794 -3.9122 34 1 4.2304 -5.6056 -4.2027 35 1 4.4442 -9.4483 -5.9413 36 1 3.1603 -8.1678 -6.0818 37 1 5.6307 -8.0341 -7.3393 38 1 6.3834 -6.3718 -5.2482 39 1 6.7862 -8.1433 -5.3355 40 1 5.7867 -8.9148 -3.0907 41 1 3.9834 -9.1391 -3.1193 42 1 3.1398 -5.8196 1.3488 43 1 2.0633 -6.9664 0.5121 44 1 0.9163 -4.8132 1.1660 45 1 0.8798 -5.1294 -0.5859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160483349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:57 Heat of formation + Delta-G solvation = 3.716706 kcal Electronic energy + Delta-G solvation = -24206.130863 eV Core-core repulsion = 20838.117343 eV Total energy + Delta-G solvation = -3368.013520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13297 -40.69409 -39.06104 -36.44137 -36.19322 -34.51789 -32.31513 -29.92456 -27.99911 -27.05999 -26.84730 -26.64151 -24.83319 -24.41476 -23.36175 -21.75181 -19.70008 -19.15681 -18.96471 -18.47817 -17.36346 -17.04924 -16.46486 -16.32322 -16.13706 -15.99870 -15.65853 -15.56585 -15.37567 -14.77772 -14.44871 -14.21949 -14.08883 -13.81990 -13.43225 -13.30522 -13.12812 -13.05411 -12.72880 -12.64867 -12.51550 -12.34945 -12.18472 -12.07026 -11.87915 -11.63174 -11.39653 -11.23866 -10.83697 -10.67233 -10.57534 -9.83013 -9.82189 -9.19745 -8.67953 -6.39307 1.51040 1.56315 1.65081 1.82483 1.90813 2.57285 3.04975 3.06783 3.16858 3.24402 3.39655 3.49751 3.64446 3.76596 3.93006 3.99537 4.13043 4.19652 4.25889 4.31659 4.36010 4.43004 4.46848 4.63666 4.68731 4.72245 4.73207 4.76628 4.78761 4.80937 4.82870 4.95820 4.97689 5.01331 5.06090 5.15346 5.20661 5.29439 5.42246 5.72396 5.92449 6.28507 6.34125 6.36053 6.41515 6.58044 7.07474 7.42130 8.70969 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.003576 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.896443 B = 7828.665265 C = 8748.704721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.051 3.949 12 C 0.123 3.877 13 N -0.610 5.610 14 C 0.521 3.479 15 O -0.585 6.585 16 C -0.130 4.130 17 C -0.092 4.092 18 C -0.107 4.107 19 C 0.017 3.983 20 N -0.652 5.652 21 C 0.036 3.964 22 C -0.099 4.099 23 C 0.126 3.874 24 C 0.043 3.957 25 H 0.252 0.748 26 H -0.001 1.001 27 H -0.047 1.047 28 H 0.013 0.987 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.327 0.673 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 -16.323 -9.686 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.945 3.055 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.213 1.213 7 C -0.633 4.633 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.258 5.258 11 C -0.078 4.078 12 C 0.001 3.999 13 N -0.343 5.343 14 C 0.311 3.689 15 O -0.465 6.465 16 C -0.150 4.150 17 C -0.129 4.129 18 C -0.107 4.107 19 C -0.113 4.113 20 N -0.277 5.277 21 C -0.094 4.094 22 C -0.137 4.137 23 C 0.003 3.997 24 C -0.087 4.087 25 H 0.061 0.939 26 H 0.017 0.983 27 H -0.030 1.030 28 H 0.031 0.969 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 14.584 -14.410 -9.259 22.496 hybrid contribution -1.022 -2.539 -0.214 2.745 sum 13.562 -16.950 -9.473 23.684 Atomic orbital electron populations 1.70909 1.08147 1.29608 1.49146 1.27449 0.96445 1.06859 0.92786 0.82846 0.74276 0.70664 0.77712 1.20037 1.18723 1.21262 1.22278 0.95125 0.91690 1.54246 0.91874 1.19540 0.90768 0.90381 0.92538 1.61942 1.26560 1.02241 1.35009 1.22367 0.95708 1.00241 0.89461 1.21978 0.94453 0.80676 1.02817 1.48337 1.46685 1.09232 1.30005 1.21144 0.81717 0.82186 0.83833 1.90632 1.54048 1.31726 1.70112 1.22881 0.99551 1.01732 0.90881 1.22491 0.98690 0.99507 0.92245 1.22778 0.97857 0.97120 0.92960 1.23574 0.98729 0.96728 0.92244 1.66900 1.12774 1.40730 1.07302 1.23533 0.93846 1.03291 0.88709 1.22663 1.03372 0.94481 0.93186 1.21569 0.91430 0.98035 0.88689 1.22458 0.95771 0.90170 1.00258 0.93872 0.98288 1.02953 0.96866 0.89600 0.89562 0.86522 0.84241 0.91407 0.89415 0.89734 0.90553 0.85918 0.88772 0.89094 0.88979 0.90363 0.89971 0.89313 0.90168 0.96858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.65 21.45 0.29 -57.59 16 2 C -0.04 -2.17 5.46 84.65 0.46 -1.71 16 3 Si 1.12 49.03 29.90 68.60 2.05 51.08 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.60 -32.95 8.41 25.60 0.22 -32.73 16 8 H 0.06 3.38 7.13 -2.91 -0.02 3.36 16 9 C 0.19 10.17 4.04 85.56 0.35 10.51 16 10 N -0.53 -22.40 4.62 -899.81 -4.16 -26.56 16 11 C 0.05 1.83 5.46 86.38 0.47 2.30 16 12 C 0.12 3.18 6.46 86.35 0.56 3.74 16 13 N -0.61 -17.32 3.01 -817.93 -2.46 -19.78 16 14 C 0.52 14.40 7.23 87.66 0.63 15.03 16 15 O -0.58 -20.15 15.35 -3.05 -0.05 -20.19 16 16 C -0.13 -2.46 2.73 -10.89 -0.03 -2.49 16 17 C -0.09 -1.75 6.95 30.86 0.21 -1.54 16 18 C -0.11 -1.63 1.26 -52.30 -0.07 -1.70 16 19 C 0.02 0.26 8.67 86.05 0.75 1.00 16 20 N -0.65 -9.62 8.53 -538.51 -4.59 -14.21 16 21 C 0.04 0.43 8.67 86.05 0.75 1.17 16 22 C -0.10 -1.69 7.18 30.86 0.22 -1.46 16 23 C 0.13 3.87 6.59 86.35 0.57 4.43 16 24 C 0.04 1.55 5.62 86.38 0.49 2.04 16 25 H 0.25 15.82 7.22 -92.70 -0.67 15.15 16 26 H 0.00 -0.05 7.84 -2.38 -0.02 -0.07 16 27 H -0.05 -2.68 7.99 -2.39 -0.02 -2.70 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 3.30 6.67 -2.39 -0.02 3.28 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.12 2.23 5.51 -2.39 -0.01 2.22 16 32 H 0.14 1.93 7.54 -2.39 -0.02 1.91 16 33 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.09 1.58 7.94 -2.39 -0.02 1.56 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.33 3.60 8.92 -89.69 -0.80 2.80 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.08 1.70 7.42 -2.39 -0.02 1.68 16 42 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.09 2.74 7.07 -2.39 -0.02 2.73 16 44 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.62 351.72 -3.06 -73.68 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.28 Total: 14.97 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.57 Total: -1.39 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -10.92 Total: -118.14 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -70.62 -3.06 -73.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160483349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.398 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds