Wall clock time and date at job start Tue Mar 31 2020 07:18:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.34670 * 125.79767 * 2 1
4 4 H 0.97001 * 124.85111 * 0.02562 * 3 2 1
5 5 C 1.36440 * 110.29380 * 180.30320 * 3 2 1
6 6 C 1.34490 * 108.85939 * 359.72740 * 5 3 2
7 7 C 1.36765 * 125.80708 * 179.83385 * 2 1 3
8 8 C 1.47262 * 126.93831 * 359.97352 * 7 2 1
9 9 O 1.21631 * 119.99855 * 359.71598 * 8 7 2
10 10 N 1.34778 * 120.00020 * 179.71306 * 8 7 2
11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7
12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8
13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8
14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8
15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10
16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11
17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14
18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15
19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16
20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17
21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17
22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 120.00119 * 180.02562 * 21 19 18
24 24 H 1.48502 * 109.47317 * 0.02562 * 23 21 19
25 25 H 1.48506 * 109.47211 * 120.00274 * 23 21 19
26 26 H 1.48507 * 109.47345 * 240.00036 * 23 21 19
27 27 H 1.09002 * 109.47142 * 270.16859 * 1 2 3
28 28 H 1.08999 * 109.47418 * 30.16752 * 1 2 3
29 29 H 1.08997 * 109.46904 * 150.16981 * 1 2 3
30 30 H 1.08000 * 125.57475 * 179.74607 * 5 3 2
31 31 H 1.08002 * 126.83622 * 179.97438 * 6 5 3
32 32 H 0.97001 * 119.99750 * 0.02562 * 10 8 7
33 33 H 1.09002 * 109.46911 * 299.99864 * 13 11 10
34 34 H 1.08992 * 109.47188 * 59.99700 * 13 11 10
35 35 H 1.08997 * 109.46828 * 179.97438 * 13 11 10
36 36 H 1.09000 * 109.46866 * 304.99526 * 14 11 10
37 37 H 1.09001 * 109.46611 * 184.99643 * 14 11 10
38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11
39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11
40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14
41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14
42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15
43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15
44 44 H 0.96999 * 120.00076 * 0.02562 * 18 17 16
45 45 H 0.97000 * 120.00284 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2947 1.0923 0.0000
4 1 1.9733 2.0075 0.0004
5 6 3.6095 0.7276 -0.0068
6 6 3.6882 -0.6150 -0.0052
7 6 2.3072 -1.1091 0.0032
8 6 1.8704 -2.5155 0.0078
9 8 0.6840 -2.7838 0.0144
10 7 2.7852 -3.5053 0.0048
11 6 2.3506 -4.9043 0.0088
12 1 1.4418 -5.0008 0.6029
13 6 2.0723 -5.3562 -1.4262
14 6 3.4508 -5.7783 0.6144
15 6 3.6424 -5.4096 2.0869
16 6 4.7422 -6.2841 2.6925
17 6 4.9343 -5.9150 4.1649
18 7 5.9869 -6.7527 4.7450
19 6 6.3359 -6.6007 6.0604
20 1 5.8348 -5.8635 6.6703
21 6 7.3336 -7.3940 6.6099
22 7 7.9446 -8.2920 5.8665
23 14 7.8092 -7.1872 8.4044
24 1 6.9786 -6.1193 9.0168
25 1 7.5833 -8.4648 9.1269
26 1 9.2435 -6.8134 8.4966
27 1 -0.3633 0.0030 1.0277
28 1 -0.3634 0.8885 -0.5164
29 1 -0.3633 -0.8915 -0.5112
30 1 4.4497 1.4061 -0.0122
31 1 4.5890 -1.2108 -0.0097
32 1 3.7313 -3.2912 -0.0001
33 1 1.2884 -4.7335 -1.8576
34 1 2.9810 -5.2597 -2.0202
35 1 1.7494 -6.3972 -1.4231
36 1 4.3834 -5.6145 0.0744
37 1 3.1654 -6.8274 0.5366
38 1 2.7099 -5.5735 2.6268
39 1 3.9278 -4.3605 2.1646
40 1 4.4565 -7.3330 2.6148
41 1 5.6749 -6.1207 2.1527
42 1 5.2202 -4.8661 4.2423
43 1 4.0017 -6.0782 4.7050
44 1 6.4372 -7.4145 4.1971
45 1 8.6415 -8.8467 6.2506
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001170067610.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 07:18:19
Heat of formation + Delta-G solvation = -10.282547 kcal
Electronic energy + Delta-G solvation = -22745.869544 eV
Core-core repulsion = 19377.248971 eV
Total energy + Delta-G solvation = -3368.620573 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 293.184 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.47106 -39.37318 -36.76799 -35.15458 -33.19239 -31.99160 -31.73930 -30.79619
-29.98408 -27.36380 -26.61034 -24.25650 -23.21779 -21.88055 -21.09861 -20.64417
-20.39185 -19.64007 -17.95099 -16.96495 -16.29179 -16.09610 -15.32607 -14.94420
-14.67569 -14.41366 -14.11480 -13.82604 -13.66450 -13.40946 -13.28358 -13.10871
-12.95723 -12.83776 -12.78618 -12.76613 -12.19848 -11.81577 -11.67279 -11.35543
-11.17709 -10.92206 -10.78002 -10.62003 -10.33933 -10.21980 -9.92021 -9.81434
-9.61894 -9.17720 -8.95687 -8.81943 -8.41491 -6.85476 -5.71545 -2.99528
1.58289 2.18922 2.82539 3.38733 3.46497 3.51440 3.51888 3.54462
4.55892 4.59046 4.69114 4.74873 4.92405 4.97547 5.07053 5.10898
5.27579 5.37103 5.38348 5.52894 5.56141 5.60442 5.60740 5.69782
5.72611 5.80802 5.87127 5.94610 6.04157 6.07319 6.21825 6.35517
6.39363 6.45409 6.49363 6.55221 6.59059 6.68205 6.97057 7.00865
7.14798 7.61952 7.75555 8.35242 8.48089 9.58733 10.18647 10.53326
11.51786
Molecular weight = 293.18amu
Principal moments of inertia in cm(-1)
A = 0.016958 B = 0.002620 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1650.713387 B =10682.716527 C =11729.998055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.104 3.896
3 N -0.554 5.554
4 H 0.415 0.585
5 C -0.018 4.018
6 C -0.167 4.167
7 C -0.236 4.236
8 C 0.592 3.408
9 O -0.555 6.555
10 N -0.718 5.718
11 C 0.142 3.858
12 H 0.088 0.912
13 C -0.162 4.162
14 C -0.126 4.126
15 C -0.114 4.114
16 C -0.125 4.125
17 C 0.152 3.848
18 N -0.735 5.735
19 C -0.236 4.236
20 H 0.070 0.930
21 C -0.017 4.017
22 N -0.935 5.935
23 Si 0.907 3.093
24 H -0.280 1.280
25 H -0.292 1.292
26 H -0.292 1.292
27 H 0.077 0.923
28 H 0.061 0.939
29 H 0.101 0.899
30 H 0.169 0.831
31 H 0.146 0.854
32 H 0.400 0.600
33 H 0.058 0.942
34 H 0.055 0.945
35 H 0.064 0.936
36 H 0.067 0.933
37 H 0.078 0.922
38 H 0.061 0.939
39 H 0.061 0.939
40 H 0.060 0.940
41 H 0.060 0.940
42 H 0.016 0.984
43 H 0.016 0.984
44 H 0.383 0.617
45 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.786 18.092 -18.402 28.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.014 4.014
3 N -0.150 5.150
4 H 0.251 0.749
5 C -0.145 4.145
6 C -0.191 4.191
7 C -0.246 4.246
8 C 0.382 3.618
9 O -0.435 6.435
10 N -0.369 5.369
11 C 0.038 3.962
12 H 0.106 0.894
13 C -0.220 4.220
14 C -0.164 4.164
15 C -0.152 4.152
16 C -0.163 4.163
17 C 0.025 3.975
18 N -0.379 5.379
19 C -0.367 4.367
20 H 0.088 0.912
21 C -0.213 4.213
22 N -0.584 5.584
23 Si 0.738 3.262
24 H -0.206 1.206
25 H -0.219 1.219
26 H -0.219 1.219
27 H 0.096 0.904
28 H 0.080 0.920
29 H 0.120 0.880
30 H 0.187 0.813
31 H 0.164 0.836
32 H 0.234 0.766
33 H 0.077 0.923
34 H 0.074 0.926
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.097 0.903
38 H 0.080 0.920
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.078 0.922
42 H 0.034 0.966
43 H 0.034 0.966
44 H 0.216 0.784
45 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -13.636 18.068 -18.216 29.055
hybrid contribution 1.077 0.427 0.870 1.449
sum -12.558 18.494 -17.346 28.295
Atomic orbital electron populations
1.20574 0.87030 1.04088 1.03537 1.20359 0.93725 0.85680 1.01654
1.41610 1.06314 1.08395 1.58677 0.74854 1.21735 0.85633 0.96537
1.10600 1.22071 0.95855 0.93734 1.07409 1.20159 0.93238 0.92164
1.19033 1.17324 0.85312 0.84070 0.75128 1.90717 1.16694 1.84481
1.51608 1.45864 1.09726 1.05749 1.75530 1.21001 0.98637 0.80006
0.96547 0.89416 1.22172 1.01831 1.01473 0.96567 1.21933 0.98128
0.99792 0.96589 1.21516 0.99382 1.00044 0.94256 1.21726 0.98031
0.99520 0.97041 1.20653 0.91907 0.94124 0.90845 1.42409 1.42127
1.43407 1.09981 1.19311 1.14701 1.15554 0.87171 0.91188 1.24749
0.99400 0.98971 0.98175 1.69673 1.28201 1.25431 1.35139 0.86111
0.77948 0.77211 0.84928 1.20561 1.21883 1.21892 0.90395 0.91994
0.88008 0.81343 0.83649 0.76598 0.92302 0.92611 0.91693 0.91436
0.90334 0.92042 0.92028 0.92105 0.92168 0.96599 0.96579 0.78362
0.93625
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.77 9.88 36.01 0.36 -0.42 16
2 C 0.10 0.99 7.17 -81.88 -0.59 0.40 16
3 N -0.55 -3.76 5.90 -9.10 -0.05 -3.82 16
4 H 0.42 1.44 8.96 -40.82 -0.37 1.07 16
5 C -0.02 -0.13 11.89 -16.83 -0.20 -0.33 16
6 C -0.17 -1.52 10.56 -37.50 -0.40 -1.92 16
7 C -0.24 -2.65 6.29 -103.36 -0.65 -3.30 16
8 C 0.59 7.62 7.77 -12.59 -0.10 7.52 16
9 O -0.56 -8.54 14.48 5.25 0.08 -8.47 16
10 N -0.72 -7.81 4.53 -54.93 -0.25 -8.06 16
11 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16
12 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16
13 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16
14 C -0.13 -1.35 4.75 -26.73 -0.13 -1.47 16
15 C -0.11 -1.50 5.10 -26.73 -0.14 -1.64 16
16 C -0.13 -2.07 5.33 -26.73 -0.14 -2.21 16
17 C 0.15 3.23 6.26 -4.04 -0.03 3.21 16
18 N -0.74 -19.58 5.60 -59.91 -0.34 -19.92 16
19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16
20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16
21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16
22 N -0.94 -29.05 13.06 55.49 0.72 -28.33 16
23 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16
24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
29 H 0.10 1.03 6.47 -51.93 -0.34 0.70 16
30 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16
31 H 0.15 1.09 7.70 -52.49 -0.40 0.69 16
32 H 0.40 3.68 7.73 -40.82 -0.32 3.37 16
33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
39 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16
40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
44 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16
45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16
LS Contribution 372.75 15.07 5.62 5.62
Total: -1.00 -35.29 372.75 -8.89 -44.18
By element:
Atomic # 1 Polarization: 16.11 SS G_CDS: -7.57 Total: 8.54 kcal
Atomic # 6 Polarization: -5.60 SS G_CDS: -2.08 Total: -7.67 kcal
Atomic # 7 Polarization: -60.21 SS G_CDS: 0.09 Total: -60.12 kcal
Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.47 kcal
Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -35.29 -8.89 -44.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001170067610.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.897 kcal
(2) G-P(sol) polarization free energy of solvation -35.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds