Wall clock time and date at job start Tue Mar 31 2020 07:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34670 * 125.79767 * 2 1 4 4 H 0.97001 * 124.85111 * 0.02562 * 3 2 1 5 5 C 1.36440 * 110.29380 * 180.30320 * 3 2 1 6 6 C 1.34490 * 108.85939 * 359.72740 * 5 3 2 7 7 C 1.36765 * 125.80708 * 179.83385 * 2 1 3 8 8 C 1.47262 * 126.93831 * 359.97352 * 7 2 1 9 9 O 1.21631 * 119.99855 * 359.71598 * 8 7 2 10 10 N 1.34778 * 120.00020 * 179.71306 * 8 7 2 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8 13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8 14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47211 * 120.00274 * 23 21 19 26 26 H 1.48507 * 109.47345 * 240.00036 * 23 21 19 27 27 H 1.09002 * 109.47142 * 270.16859 * 1 2 3 28 28 H 1.08999 * 109.47418 * 30.16752 * 1 2 3 29 29 H 1.08997 * 109.46904 * 150.16981 * 1 2 3 30 30 H 1.08000 * 125.57475 * 179.74607 * 5 3 2 31 31 H 1.08002 * 126.83622 * 179.97438 * 6 5 3 32 32 H 0.97001 * 119.99750 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.46911 * 299.99864 * 13 11 10 34 34 H 1.08992 * 109.47188 * 59.99700 * 13 11 10 35 35 H 1.08997 * 109.46828 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.46866 * 304.99526 * 14 11 10 37 37 H 1.09001 * 109.46611 * 184.99643 * 14 11 10 38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 44 44 H 0.96999 * 120.00076 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9733 2.0075 0.0004 5 6 3.6095 0.7276 -0.0068 6 6 3.6882 -0.6150 -0.0052 7 6 2.3072 -1.1091 0.0032 8 6 1.8704 -2.5155 0.0078 9 8 0.6840 -2.7838 0.0144 10 7 2.7852 -3.5053 0.0048 11 6 2.3506 -4.9043 0.0088 12 1 1.4418 -5.0008 0.6029 13 6 2.0723 -5.3562 -1.4262 14 6 3.4508 -5.7783 0.6144 15 6 3.6424 -5.4096 2.0869 16 6 4.7422 -6.2841 2.6925 17 6 4.9343 -5.9150 4.1649 18 7 5.9869 -6.7527 4.7450 19 6 6.3359 -6.6007 6.0604 20 1 5.8348 -5.8635 6.6703 21 6 7.3336 -7.3940 6.6099 22 7 7.9446 -8.2920 5.8665 23 14 7.8092 -7.1872 8.4044 24 1 6.9786 -6.1193 9.0168 25 1 7.5833 -8.4648 9.1269 26 1 9.2435 -6.8134 8.4966 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3633 -0.8915 -0.5112 30 1 4.4497 1.4061 -0.0122 31 1 4.5890 -1.2108 -0.0097 32 1 3.7313 -3.2912 -0.0001 33 1 1.2884 -4.7335 -1.8576 34 1 2.9810 -5.2597 -2.0202 35 1 1.7494 -6.3972 -1.4231 36 1 4.3834 -5.6145 0.0744 37 1 3.1654 -6.8274 0.5366 38 1 2.7099 -5.5735 2.6268 39 1 3.9278 -4.3605 2.1646 40 1 4.4565 -7.3330 2.6148 41 1 5.6749 -6.1207 2.1527 42 1 5.2202 -4.8661 4.2423 43 1 4.0017 -6.0782 4.7050 44 1 6.4372 -7.4145 4.1971 45 1 8.6415 -8.8467 6.2506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170067610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:19 Heat of formation + Delta-G solvation = -10.282547 kcal Electronic energy + Delta-G solvation = -22745.869544 eV Core-core repulsion = 19377.248971 eV Total energy + Delta-G solvation = -3368.620573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47106 -39.37318 -36.76799 -35.15458 -33.19239 -31.99160 -31.73930 -30.79619 -29.98408 -27.36380 -26.61034 -24.25650 -23.21779 -21.88055 -21.09861 -20.64417 -20.39185 -19.64007 -17.95099 -16.96495 -16.29179 -16.09610 -15.32607 -14.94420 -14.67569 -14.41366 -14.11480 -13.82604 -13.66450 -13.40946 -13.28358 -13.10871 -12.95723 -12.83776 -12.78618 -12.76613 -12.19848 -11.81577 -11.67279 -11.35543 -11.17709 -10.92206 -10.78002 -10.62003 -10.33933 -10.21980 -9.92021 -9.81434 -9.61894 -9.17720 -8.95687 -8.81943 -8.41491 -6.85476 -5.71545 -2.99528 1.58289 2.18922 2.82539 3.38733 3.46497 3.51440 3.51888 3.54462 4.55892 4.59046 4.69114 4.74873 4.92405 4.97547 5.07053 5.10898 5.27579 5.37103 5.38348 5.52894 5.56141 5.60442 5.60740 5.69782 5.72611 5.80802 5.87127 5.94610 6.04157 6.07319 6.21825 6.35517 6.39363 6.45409 6.49363 6.55221 6.59059 6.68205 6.97057 7.00865 7.14798 7.61952 7.75555 8.35242 8.48089 9.58733 10.18647 10.53326 11.51786 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002620 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.713387 B =10682.716527 C =11729.998055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.104 3.896 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.018 4.018 6 C -0.167 4.167 7 C -0.236 4.236 8 C 0.592 3.408 9 O -0.555 6.555 10 N -0.718 5.718 11 C 0.142 3.858 12 H 0.088 0.912 13 C -0.162 4.162 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.400 0.600 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 18.092 -18.402 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.145 4.145 6 C -0.191 4.191 7 C -0.246 4.246 8 C 0.382 3.618 9 O -0.435 6.435 10 N -0.369 5.369 11 C 0.038 3.962 12 H 0.106 0.894 13 C -0.220 4.220 14 C -0.164 4.164 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.187 0.813 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.636 18.068 -18.216 29.055 hybrid contribution 1.077 0.427 0.870 1.449 sum -12.558 18.494 -17.346 28.295 Atomic orbital electron populations 1.20574 0.87030 1.04088 1.03537 1.20359 0.93725 0.85680 1.01654 1.41610 1.06314 1.08395 1.58677 0.74854 1.21735 0.85633 0.96537 1.10600 1.22071 0.95855 0.93734 1.07409 1.20159 0.93238 0.92164 1.19033 1.17324 0.85312 0.84070 0.75128 1.90717 1.16694 1.84481 1.51608 1.45864 1.09726 1.05749 1.75530 1.21001 0.98637 0.80006 0.96547 0.89416 1.22172 1.01831 1.01473 0.96567 1.21933 0.98128 0.99792 0.96589 1.21516 0.99382 1.00044 0.94256 1.21726 0.98031 0.99520 0.97041 1.20653 0.91907 0.94124 0.90845 1.42409 1.42127 1.43407 1.09981 1.19311 1.14701 1.15554 0.87171 0.91188 1.24749 0.99400 0.98971 0.98175 1.69673 1.28201 1.25431 1.35139 0.86111 0.77948 0.77211 0.84928 1.20561 1.21883 1.21892 0.90395 0.91994 0.88008 0.81343 0.83649 0.76598 0.92302 0.92611 0.91693 0.91436 0.90334 0.92042 0.92028 0.92105 0.92168 0.96599 0.96579 0.78362 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.88 36.01 0.36 -0.42 16 2 C 0.10 0.99 7.17 -81.88 -0.59 0.40 16 3 N -0.55 -3.76 5.90 -9.10 -0.05 -3.82 16 4 H 0.42 1.44 8.96 -40.82 -0.37 1.07 16 5 C -0.02 -0.13 11.89 -16.83 -0.20 -0.33 16 6 C -0.17 -1.52 10.56 -37.50 -0.40 -1.92 16 7 C -0.24 -2.65 6.29 -103.36 -0.65 -3.30 16 8 C 0.59 7.62 7.77 -12.59 -0.10 7.52 16 9 O -0.56 -8.54 14.48 5.25 0.08 -8.47 16 10 N -0.72 -7.81 4.53 -54.93 -0.25 -8.06 16 11 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16 12 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 13 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 14 C -0.13 -1.35 4.75 -26.73 -0.13 -1.47 16 15 C -0.11 -1.50 5.10 -26.73 -0.14 -1.64 16 16 C -0.13 -2.07 5.33 -26.73 -0.14 -2.21 16 17 C 0.15 3.23 6.26 -4.04 -0.03 3.21 16 18 N -0.74 -19.58 5.60 -59.91 -0.34 -19.92 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 22 N -0.94 -29.05 13.06 55.49 0.72 -28.33 16 23 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 1.03 6.47 -51.93 -0.34 0.70 16 30 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.15 1.09 7.70 -52.49 -0.40 0.69 16 32 H 0.40 3.68 7.73 -40.82 -0.32 3.37 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -35.29 372.75 -8.89 -44.18 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.57 Total: 8.54 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.08 Total: -7.67 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.09 Total: -60.12 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.29 -8.89 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170067610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.897 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds