Wall clock time and date at job start Tue Mar 31 2020 07:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34670 * 125.79767 * 2 1 4 4 H 0.97001 * 124.85111 * 0.02562 * 3 2 1 5 5 C 1.36440 * 110.29380 * 180.30320 * 3 2 1 6 6 C 1.34490 * 108.85939 * 359.72740 * 5 3 2 7 7 C 1.36765 * 125.80708 * 179.83385 * 2 1 3 8 8 C 1.47262 * 126.93831 * 359.97352 * 7 2 1 9 9 O 1.21631 * 119.99855 * 359.71598 * 8 7 2 10 10 N 1.34778 * 120.00020 * 179.71306 * 8 7 2 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8 13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8 14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47211 * 120.00274 * 23 21 19 26 26 H 1.48507 * 109.47345 * 240.00036 * 23 21 19 27 27 H 1.09002 * 109.47142 * 270.16859 * 1 2 3 28 28 H 1.08999 * 109.47418 * 30.16752 * 1 2 3 29 29 H 1.08997 * 109.46904 * 150.16981 * 1 2 3 30 30 H 1.08000 * 125.57475 * 179.74607 * 5 3 2 31 31 H 1.08002 * 126.83622 * 179.97438 * 6 5 3 32 32 H 0.97001 * 119.99750 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.46911 * 299.99864 * 13 11 10 34 34 H 1.08992 * 109.47188 * 59.99700 * 13 11 10 35 35 H 1.08997 * 109.46828 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.46866 * 304.99526 * 14 11 10 37 37 H 1.09001 * 109.46611 * 184.99643 * 14 11 10 38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 44 44 H 0.96999 * 120.00076 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0923 0.0000 4 1 1.9733 2.0075 0.0004 5 6 3.6095 0.7276 -0.0068 6 6 3.6882 -0.6150 -0.0052 7 6 2.3072 -1.1091 0.0032 8 6 1.8704 -2.5155 0.0078 9 8 0.6840 -2.7838 0.0144 10 7 2.7852 -3.5053 0.0048 11 6 2.3506 -4.9043 0.0088 12 1 1.4418 -5.0008 0.6029 13 6 2.0723 -5.3562 -1.4262 14 6 3.4508 -5.7783 0.6144 15 6 3.6424 -5.4096 2.0869 16 6 4.7422 -6.2841 2.6925 17 6 4.9343 -5.9150 4.1649 18 7 5.9869 -6.7527 4.7450 19 6 6.3359 -6.6007 6.0604 20 1 5.8348 -5.8635 6.6703 21 6 7.3336 -7.3940 6.6099 22 7 7.9446 -8.2920 5.8665 23 14 7.8092 -7.1872 8.4044 24 1 6.9786 -6.1193 9.0168 25 1 7.5833 -8.4648 9.1269 26 1 9.2435 -6.8134 8.4966 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3633 -0.8915 -0.5112 30 1 4.4497 1.4061 -0.0122 31 1 4.5890 -1.2108 -0.0097 32 1 3.7313 -3.2912 -0.0001 33 1 1.2884 -4.7335 -1.8576 34 1 2.9810 -5.2597 -2.0202 35 1 1.7494 -6.3972 -1.4231 36 1 4.3834 -5.6145 0.0744 37 1 3.1654 -6.8274 0.5366 38 1 2.7099 -5.5735 2.6268 39 1 3.9278 -4.3605 2.1646 40 1 4.4565 -7.3330 2.6148 41 1 5.6749 -6.1207 2.1527 42 1 5.2202 -4.8661 4.2423 43 1 4.0017 -6.0782 4.7050 44 1 6.4372 -7.4145 4.1971 45 1 8.6415 -8.8467 6.2506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170067610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:19 Heat of formation + Delta-G solvation = -33.851544 kcal Electronic energy + Delta-G solvation = -22746.891572 eV Core-core repulsion = 19377.248971 eV Total energy + Delta-G solvation = -3369.642601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12348 -40.28298 -37.93381 -36.76175 -34.74537 -33.15185 -32.41513 -32.18030 -31.01212 -28.80066 -27.27251 -25.93967 -24.30695 -23.31259 -22.03133 -21.84436 -21.23066 -20.47573 -19.12237 -18.57824 -17.22255 -16.92404 -16.66322 -16.26665 -16.05852 -15.40529 -15.35302 -15.10800 -14.91682 -14.50189 -14.37740 -14.12059 -13.96242 -13.94881 -13.59400 -13.40919 -13.21265 -12.96825 -12.89200 -12.84612 -12.47282 -12.42646 -12.24684 -12.10705 -11.88171 -11.78623 -11.47477 -11.36709 -10.95047 -10.78266 -10.04646 -9.68351 -9.07960 -9.01771 -7.96796 -5.26154 0.79746 1.46535 1.47926 1.57552 1.58321 2.20341 2.55262 2.62390 2.64397 3.36528 3.62834 3.94553 4.04065 4.07697 4.11237 4.19121 4.31692 4.36555 4.38907 4.45651 4.62439 4.66904 4.69281 4.73189 4.81859 4.89203 4.95552 4.98868 5.01120 5.03821 5.09038 5.15424 5.27893 5.32019 5.36007 5.46316 5.47939 5.54076 5.71270 5.83542 6.01719 6.26382 6.65567 6.78381 7.31850 7.44586 8.08202 8.32279 9.27191 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002620 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.713387 B =10682.716527 C =11729.998055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.094 3.906 3 N -0.540 5.540 4 H 0.432 0.568 5 C -0.006 4.006 6 C -0.188 4.188 7 C -0.271 4.271 8 C 0.584 3.416 9 O -0.591 6.591 10 N -0.711 5.711 11 C 0.145 3.855 12 H 0.066 0.934 13 C -0.155 4.155 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.111 4.111 17 C 0.149 3.851 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.204 0.796 31 H 0.156 0.844 32 H 0.408 0.592 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.012 0.988 44 H 0.374 0.626 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 19.754 -18.670 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.025 4.025 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.134 4.134 6 C -0.212 4.212 7 C -0.281 4.281 8 C 0.375 3.625 9 O -0.474 6.474 10 N -0.362 5.362 11 C 0.040 3.960 12 H 0.084 0.916 13 C -0.214 4.214 14 C -0.153 4.153 15 C -0.142 4.142 16 C -0.149 4.149 17 C 0.022 3.978 18 N -0.392 5.392 19 C -0.381 4.381 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.217 1.217 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.221 0.779 31 H 0.174 0.826 32 H 0.244 0.756 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.170 19.776 -18.495 30.110 hybrid contribution 0.903 -0.026 0.933 1.299 sum -12.267 19.750 -17.562 29.137 Atomic orbital electron populations 1.20519 0.86537 1.04289 1.03514 1.20538 0.94354 0.86215 1.01407 1.41623 1.06044 1.08727 1.57301 0.72811 1.22284 0.86405 0.96450 1.08218 1.22305 0.95306 0.94890 1.08698 1.20294 0.94921 0.91707 1.21191 1.17708 0.85032 0.85169 0.74615 1.90687 1.18109 1.85134 1.53492 1.45827 1.09999 1.05519 1.74844 1.20937 0.97832 0.80143 0.97041 0.91565 1.22103 1.01853 1.01791 0.95606 1.21836 0.98703 1.00149 0.94643 1.21409 0.97682 0.99374 0.95753 1.21595 0.99348 0.99976 0.94016 1.20845 0.90082 0.93291 0.93550 1.42641 1.43179 1.43922 1.09428 1.19694 1.14612 1.15345 0.88437 0.90921 1.25622 0.99681 0.98970 1.02660 1.69823 1.28828 1.26413 1.37015 0.85033 0.77548 0.77306 0.79628 1.19143 1.21812 1.21651 0.90500 0.89095 0.90444 0.77947 0.82646 0.75567 0.93963 0.91384 0.90456 0.89926 0.89426 0.92743 0.91907 0.92302 0.91829 0.96529 0.96977 0.79384 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.88 71.24 0.70 -0.76 16 2 C 0.09 1.73 7.17 41.78 0.30 2.03 16 3 N -0.54 -6.16 5.90 -182.72 -1.08 -7.24 16 4 H 0.43 1.80 8.96 -92.71 -0.83 0.97 16 5 C -0.01 -0.07 11.89 83.12 0.99 0.92 16 6 C -0.19 -3.19 10.56 23.62 0.25 -2.94 16 7 C -0.27 -6.05 6.29 -19.04 -0.12 -6.17 16 8 C 0.58 15.42 7.77 86.62 0.67 16.09 16 9 O -0.59 -19.13 14.48 -4.13 -0.06 -19.19 16 10 N -0.71 -15.34 4.53 -445.93 -2.02 -17.36 16 11 C 0.14 3.08 2.57 44.99 0.12 3.20 16 12 H 0.07 1.72 7.58 -2.38 -0.02 1.70 16 13 C -0.16 -2.90 9.48 71.98 0.68 -2.22 16 14 C -0.12 -2.28 4.75 30.60 0.15 -2.14 16 15 C -0.10 -2.64 5.10 30.60 0.16 -2.49 16 16 C -0.11 -3.59 5.33 30.60 0.16 -3.42 16 17 C 0.15 6.27 6.26 86.38 0.54 6.82 16 18 N -0.75 -40.06 5.60 -343.45 -1.92 -41.99 16 19 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 20 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 22 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 23 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.66 6.47 -2.39 -0.02 1.64 16 30 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.16 2.12 7.70 -2.91 -0.02 2.10 16 32 H 0.41 7.20 7.73 -92.71 -0.72 6.49 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.37 20.97 7.67 -92.71 -0.71 20.25 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.62 372.75 1.87 -74.75 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -1.26 Total: 31.15 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.90 Total: -8.87 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -4.74 Total: -126.93 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.62 1.87 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170067610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.895 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds