Wall clock time and date at job start Tue Mar 31 2020 07:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39846 * 126.45971 * 2 1 4 4 C 1.35457 * 107.86170 * 180.30250 * 3 2 1 5 5 N 1.35530 * 108.87360 * 359.74215 * 4 3 2 6 6 H 0.96997 * 125.67387 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64529 * 359.97438 * 5 4 3 8 8 C 1.46675 * 126.23095 * 180.02562 * 7 5 4 9 9 O 1.21698 * 120.00061 * 180.02562 * 8 7 5 10 10 N 1.34778 * 120.00236 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8 13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8 14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47163 * 60.00145 * 23 21 19 25 25 H 1.48505 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47290 * 300.00140 * 23 21 19 27 27 H 1.08998 * 109.46901 * 270.13841 * 1 2 3 28 28 H 1.08995 * 109.46983 * 30.13387 * 1 2 3 29 29 H 1.08997 * 109.47238 * 150.13899 * 1 2 3 30 30 H 1.08002 * 126.06615 * 0.02562 * 3 2 1 31 31 H 1.07998 * 125.55829 * 179.70413 * 4 3 2 32 32 H 0.97001 * 119.99750 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.46828 * 179.97438 * 13 11 10 34 34 H 1.09002 * 109.46911 * 299.99864 * 13 11 10 35 35 H 1.08992 * 109.47188 * 59.99700 * 13 11 10 36 36 H 1.09000 * 109.46866 * 304.99526 * 14 11 10 37 37 H 1.09001 * 109.46611 * 184.99643 * 14 11 10 38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 44 44 H 0.96999 * 120.00076 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2244 -0.0088 7 6 2.3263 -1.1089 0.0032 8 6 1.8899 -2.5092 0.0080 9 8 0.7027 -2.7766 0.0150 10 7 2.8037 -3.4999 0.0045 11 6 2.3678 -4.8985 0.0088 12 1 1.4591 -4.9941 0.6032 13 6 2.0884 -5.3501 -1.4261 14 6 3.4674 -5.7736 0.6139 15 6 3.6599 -5.4051 2.0863 16 6 4.7591 -6.2807 2.6915 17 6 4.9521 -5.9117 4.1638 18 7 6.0042 -6.7505 4.7435 19 6 6.3538 -6.5987 6.0587 20 1 5.8537 -5.8611 6.6688 21 6 7.3510 -7.3931 6.6079 22 7 7.9607 -8.2917 5.8643 23 14 7.8274 -7.1867 8.4022 24 1 6.6453 -7.4496 9.2617 25 1 8.9093 -8.1460 8.7406 26 1 8.3069 -5.7999 8.6307 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8887 -0.5159 29 1 -0.3633 -0.8912 -0.5117 30 1 2.0137 2.1549 0.0004 31 1 4.4973 1.3252 -0.0131 32 1 3.7500 -3.2868 -0.0007 33 1 1.7645 -6.3908 -1.4229 34 1 1.3050 -4.7267 -1.8572 35 1 2.9970 -5.2545 -2.0205 36 1 4.3999 -5.6106 0.0736 37 1 3.1809 -6.8224 0.5363 38 1 2.7274 -5.5681 2.6266 39 1 3.9464 -4.3563 2.1640 40 1 4.4723 -7.3293 2.6139 41 1 5.6918 -6.1181 2.1513 42 1 5.2391 -4.8631 4.2411 43 1 4.0195 -6.0739 4.7043 44 1 6.4535 -7.4127 4.1954 45 1 8.6573 -8.8470 6.2480 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170484226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:38 Heat of formation + Delta-G solvation = -9.051901 kcal Electronic energy + Delta-G solvation = -22799.385652 eV Core-core repulsion = 19430.818444 eV Total energy + Delta-G solvation = -3368.567208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59510 -39.50715 -36.96704 -35.30262 -33.43244 -32.71723 -31.70429 -30.46153 -29.53343 -27.47675 -27.05195 -24.32286 -23.12784 -21.97881 -21.20843 -20.76612 -20.59115 -19.40365 -18.85257 -17.02243 -16.52616 -15.92219 -15.49604 -15.05175 -14.72808 -14.33248 -14.13761 -14.02778 -13.77782 -13.48850 -13.32079 -13.13265 -12.95852 -12.87897 -12.83174 -12.48531 -12.34012 -11.80312 -11.79312 -11.49491 -11.29502 -11.02038 -10.80735 -10.73714 -10.45838 -10.33921 -10.09191 -10.01811 -9.67669 -9.32466 -9.04207 -8.86454 -8.40518 -6.91677 -5.76386 -3.04915 1.23384 2.47893 2.80551 2.94250 3.19633 3.43974 3.47927 3.49337 4.44735 4.60476 4.69353 4.74631 4.86536 4.93445 4.95501 5.07186 5.22547 5.36850 5.42368 5.52810 5.53329 5.58368 5.63701 5.68979 5.70678 5.75349 5.86290 5.91984 5.92893 6.07107 6.13059 6.20786 6.27501 6.33346 6.36363 6.43984 6.47467 6.70003 6.87484 6.91376 7.07273 7.30595 7.69575 7.99936 8.43075 9.53677 10.12668 10.47354 11.46697 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002631 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.643337 B =10638.257247 C =11662.639231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.074 4.074 3 C -0.214 4.214 4 C 0.027 3.973 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.062 4.062 8 C 0.590 3.410 9 O -0.528 6.528 10 N -0.724 5.724 11 C 0.142 3.858 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.171 0.829 32 H 0.393 0.607 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 15.615 -18.331 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.238 4.238 4 C -0.109 4.109 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.174 4.174 8 C 0.378 3.622 9 O -0.405 6.405 10 N -0.375 5.375 11 C 0.038 3.962 12 H 0.110 0.890 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.160 0.840 31 H 0.188 0.812 32 H 0.226 0.774 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.035 0.965 44 H 0.216 0.784 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.612 15.300 -18.151 26.427 hybrid contribution 1.575 -0.195 0.875 1.812 sum -10.037 15.104 -17.276 25.047 Atomic orbital electron populations 1.20342 0.89321 1.02774 1.02291 1.19976 0.95912 0.90816 1.01601 1.20819 0.91854 0.98833 1.12308 1.22027 0.99619 0.82966 1.06291 1.41961 1.07187 1.07343 1.57175 0.74632 1.20253 0.83755 0.93613 1.19794 1.17040 0.85926 0.83008 0.76213 1.90807 1.15992 1.83259 1.50400 1.46010 1.09143 1.06476 1.75914 1.21069 0.98865 0.79354 0.96875 0.89048 1.22178 1.01904 1.01786 0.96258 1.21951 0.97986 0.99999 0.96574 1.21521 0.99611 0.99813 0.94261 1.21729 0.97898 0.99593 0.97118 1.20643 0.92015 0.94076 0.90771 1.42382 1.42175 1.43328 1.10002 1.19213 1.14971 1.15742 0.87183 0.91286 1.24750 0.99311 0.98856 0.98212 1.69650 1.28181 1.25231 1.35365 0.86251 0.77814 0.77166 0.84873 1.21229 1.21641 1.21277 0.91477 0.92094 0.90197 0.83989 0.81166 0.77356 0.91381 0.92152 0.92603 0.91462 0.90019 0.91850 0.92360 0.91966 0.92203 0.96733 0.96534 0.78354 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.82 36.00 0.35 -0.56 16 2 C -0.07 -0.81 6.21 -104.16 -0.65 -1.45 16 3 C -0.21 -1.87 10.76 -39.97 -0.43 -2.30 16 4 C 0.03 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.09 5.99 -9.39 -0.06 -4.15 16 6 H 0.42 2.02 8.19 -40.82 -0.33 1.68 16 7 C -0.06 -0.66 7.06 -81.98 -0.58 -1.24 16 8 C 0.59 6.99 7.75 -12.85 -0.10 6.90 16 9 O -0.53 -7.83 14.47 5.19 0.08 -7.75 16 10 N -0.72 -6.79 4.53 -55.11 -0.25 -7.04 16 11 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 12 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 13 C -0.16 -1.43 9.48 37.16 0.35 -1.07 16 14 C -0.13 -1.22 4.75 -26.73 -0.13 -1.34 16 15 C -0.11 -1.39 5.10 -26.73 -0.14 -1.53 16 16 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 17 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 18 N -0.73 -19.23 5.60 -59.91 -0.34 -19.56 16 19 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.94 -28.72 13.06 55.49 0.72 -28.00 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.93 6.49 -51.93 -0.34 0.59 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 32 H 0.39 2.80 7.73 -40.82 -0.32 2.49 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.70 7.75 -51.93 -0.40 0.29 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.62 372.37 -8.92 -43.54 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.56 Total: 7.67 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.10 Total: -8.02 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.08 Total: -58.75 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.62 -8.92 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170484226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.485 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds