Wall clock time and date at job start Tue Mar 31 2020 07:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39846 * 126.45971 * 2 1 4 4 C 1.35457 * 107.86170 * 180.30250 * 3 2 1 5 5 N 1.35530 * 108.87360 * 359.74215 * 4 3 2 6 6 H 0.96997 * 125.67387 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64529 * 359.97438 * 5 4 3 8 8 C 1.46675 * 126.23095 * 180.02562 * 7 5 4 9 9 O 1.21698 * 120.00061 * 180.02562 * 8 7 5 10 10 N 1.34778 * 120.00236 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47120 * 324.99235 * 11 10 8 13 13 C 1.52999 * 109.47548 * 84.99863 * 11 10 8 14 14 C 1.53006 * 109.46857 * 205.00038 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99738 * 14 11 10 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46691 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99597 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00321 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99825 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00119 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47163 * 60.00145 * 23 21 19 25 25 H 1.48505 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47290 * 300.00140 * 23 21 19 27 27 H 1.08998 * 109.46901 * 270.13841 * 1 2 3 28 28 H 1.08995 * 109.46983 * 30.13387 * 1 2 3 29 29 H 1.08997 * 109.47238 * 150.13899 * 1 2 3 30 30 H 1.08002 * 126.06615 * 0.02562 * 3 2 1 31 31 H 1.07998 * 125.55829 * 179.70413 * 4 3 2 32 32 H 0.97001 * 119.99750 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.46828 * 179.97438 * 13 11 10 34 34 H 1.09002 * 109.46911 * 299.99864 * 13 11 10 35 35 H 1.08992 * 109.47188 * 59.99700 * 13 11 10 36 36 H 1.09000 * 109.46866 * 304.99526 * 14 11 10 37 37 H 1.09001 * 109.46611 * 184.99643 * 14 11 10 38 38 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 39 39 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 44 44 H 0.96999 * 120.00076 * 0.02562 * 18 17 16 45 45 H 0.97000 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0053 6 1 4.4190 -1.2244 -0.0088 7 6 2.3263 -1.1089 0.0032 8 6 1.8899 -2.5092 0.0080 9 8 0.7027 -2.7766 0.0150 10 7 2.8037 -3.4999 0.0045 11 6 2.3678 -4.8985 0.0088 12 1 1.4591 -4.9941 0.6032 13 6 2.0884 -5.3501 -1.4261 14 6 3.4674 -5.7736 0.6139 15 6 3.6599 -5.4051 2.0863 16 6 4.7591 -6.2807 2.6915 17 6 4.9521 -5.9117 4.1638 18 7 6.0042 -6.7505 4.7435 19 6 6.3538 -6.5987 6.0587 20 1 5.8537 -5.8611 6.6688 21 6 7.3510 -7.3931 6.6079 22 7 7.9607 -8.2917 5.8643 23 14 7.8274 -7.1867 8.4022 24 1 6.6453 -7.4496 9.2617 25 1 8.9093 -8.1460 8.7406 26 1 8.3069 -5.7999 8.6307 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8887 -0.5159 29 1 -0.3633 -0.8912 -0.5117 30 1 2.0137 2.1549 0.0004 31 1 4.4973 1.3252 -0.0131 32 1 3.7500 -3.2868 -0.0007 33 1 1.7645 -6.3908 -1.4229 34 1 1.3050 -4.7267 -1.8572 35 1 2.9970 -5.2545 -2.0205 36 1 4.3999 -5.6106 0.0736 37 1 3.1809 -6.8224 0.5363 38 1 2.7274 -5.5681 2.6266 39 1 3.9464 -4.3563 2.1640 40 1 4.4723 -7.3293 2.6139 41 1 5.6918 -6.1181 2.1513 42 1 5.2391 -4.8631 4.2411 43 1 4.0195 -6.0739 4.7043 44 1 6.4535 -7.4127 4.1954 45 1 8.6573 -8.8470 6.2480 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170484226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:38 Heat of formation + Delta-G solvation = -31.998314 kcal Electronic energy + Delta-G solvation = -22800.380683 eV Core-core repulsion = 19430.818444 eV Total energy + Delta-G solvation = -3369.562239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27785 -40.34191 -38.03336 -36.85533 -34.86142 -33.60865 -32.94982 -31.89069 -30.24970 -28.84461 -27.81063 -25.96849 -24.21477 -23.27846 -22.08727 -21.96393 -21.40284 -20.16843 -19.54397 -19.13964 -17.38960 -16.74737 -16.61614 -16.38713 -16.15761 -15.43055 -15.34428 -15.06353 -14.86685 -14.71332 -14.44679 -14.20141 -14.01770 -13.88963 -13.59416 -13.26221 -13.17688 -13.02604 -12.90788 -12.85530 -12.53753 -12.47793 -12.30250 -12.21776 -11.90538 -11.85118 -11.52902 -11.43005 -10.99010 -10.95370 -10.18855 -9.69124 -9.10069 -9.04110 -7.98621 -5.28150 0.47838 1.45207 1.48606 1.54984 1.84044 2.10026 2.29023 2.36109 2.53703 3.34513 3.55920 3.91095 4.01021 4.02308 4.11940 4.26690 4.27297 4.32410 4.39060 4.40551 4.57311 4.61962 4.74009 4.84425 4.87877 4.89140 4.89576 4.95100 4.97939 5.02558 5.08361 5.17832 5.23675 5.29610 5.39545 5.43186 5.45657 5.49769 5.54591 5.78744 5.99471 6.24252 6.47758 6.63733 7.17290 7.29956 8.06195 8.29968 9.24813 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002631 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.643337 B =10638.257247 C =11662.639231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.098 4.098 3 C -0.232 4.232 4 C 0.046 3.954 5 N -0.530 5.530 6 H 0.429 0.571 7 C -0.089 4.089 8 C 0.586 3.414 9 O -0.568 6.568 10 N -0.713 5.713 11 C 0.145 3.855 12 H 0.069 0.931 13 C -0.157 4.157 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.112 4.112 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.253 4.253 20 H 0.072 0.928 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.976 3.024 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.276 1.276 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.158 0.842 31 H 0.210 0.790 32 H 0.406 0.594 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.017 0.983 43 H 0.011 0.989 44 H 0.374 0.626 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 16.889 -18.686 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.256 4.256 4 C -0.091 4.091 5 N -0.127 5.127 6 H 0.269 0.731 7 C -0.201 4.201 8 C 0.375 3.625 9 O -0.448 6.448 10 N -0.365 5.365 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.215 4.215 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.150 4.150 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.385 4.385 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.202 1.202 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.227 0.773 32 H 0.242 0.758 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.206 0.794 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.478 16.585 -18.517 26.977 hybrid contribution 1.209 -0.522 0.967 1.634 sum -9.269 16.063 -17.549 25.533 Atomic orbital electron populations 1.20285 0.89724 1.02559 1.01874 1.20292 0.96273 0.92018 1.02161 1.21110 0.92329 0.99108 1.13032 1.22674 1.00378 0.82817 1.03258 1.41967 1.06597 1.07879 1.56284 0.73078 1.20121 0.85210 0.92955 1.21830 1.17287 0.85639 0.83899 0.75697 1.90780 1.17647 1.83937 1.52458 1.45909 1.09555 1.06017 1.74982 1.20994 0.98083 0.79528 0.97294 0.91245 1.22113 1.01983 1.02001 0.95390 1.21851 0.98672 1.00262 0.94579 1.21421 0.97769 0.99315 0.95786 1.21597 0.99362 1.00022 0.93982 1.20847 0.90080 0.93278 0.93595 1.42616 1.43254 1.43874 1.09405 1.19619 1.14830 1.15501 0.88521 0.90961 1.25612 0.99633 0.98887 1.02619 1.69804 1.28798 1.26223 1.37154 0.85183 0.77405 0.77321 0.79688 1.20438 1.21783 1.20209 0.92018 0.90341 0.92287 0.82425 0.77293 0.75849 0.90306 0.93900 0.91198 0.89668 0.89283 0.92717 0.91875 0.92318 0.91709 0.96535 0.97076 0.79375 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.82 71.23 0.70 -1.14 16 2 C -0.10 -2.11 6.21 -19.56 -0.12 -2.23 16 3 C -0.23 -3.65 10.76 22.02 0.24 -3.41 16 4 C 0.05 0.52 11.89 83.48 0.99 1.51 16 5 N -0.53 -6.91 5.99 -183.62 -1.10 -8.01 16 6 H 0.43 3.03 8.19 -92.71 -0.76 2.27 16 7 C -0.09 -1.85 7.06 40.35 0.28 -1.57 16 8 C 0.59 14.02 7.75 86.45 0.67 14.69 16 9 O -0.57 -17.70 14.47 -4.34 -0.06 -17.76 16 10 N -0.71 -12.71 4.53 -446.48 -2.02 -14.73 16 11 C 0.15 2.68 2.57 44.99 0.12 2.80 16 12 H 0.07 1.63 7.58 -2.38 -0.02 1.61 16 13 C -0.16 -2.56 9.48 71.98 0.68 -1.87 16 14 C -0.12 -1.97 4.75 30.60 0.15 -1.83 16 15 C -0.10 -2.40 5.10 30.60 0.16 -2.25 16 16 C -0.11 -3.38 5.33 30.60 0.16 -3.22 16 17 C 0.15 6.04 6.26 86.38 0.54 6.58 16 18 N -0.75 -39.19 5.60 -343.45 -1.92 -41.11 16 19 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 23 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.48 6.49 -2.39 -0.02 1.46 16 30 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 32 H 0.41 5.00 7.73 -92.71 -0.72 4.28 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.53 372.37 1.88 -73.65 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -1.19 Total: 28.56 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.87 Total: -9.55 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.76 Total: -123.37 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.06 Total: -17.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.53 1.88 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170484226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.651 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds