Wall clock time and date at job start Tue Mar 31 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46774 * 2 1 4 4 C 1.35994 * 116.99843 * 180.02562 * 3 2 1 5 5 C 1.38570 * 120.07453 * 0.27775 * 4 3 2 6 6 C 1.38244 * 119.99707 * 180.25666 * 5 4 3 7 7 C 1.50697 * 119.92146 * 179.76789 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.71945 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00036 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47157 * 90.00226 * 18 16 14 20 20 H 1.48508 * 109.47051 * 210.00094 * 18 16 14 21 21 H 1.48499 * 109.47294 * 329.99827 * 18 16 14 22 22 C 1.38253 * 120.14621 * 359.48989 * 6 5 4 23 23 C 1.38240 * 120.14906 * 0.23370 * 22 6 5 24 24 C 1.38569 * 119.99661 * 0.02562 * 23 22 6 25 25 O 1.35995 * 120.06890 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47611 * 60.00250 * 1 2 3 27 27 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47231 * 299.99089 * 1 2 3 29 29 H 1.09009 * 109.46894 * 240.00690 * 2 1 3 30 30 H 1.08992 * 109.47434 * 120.00263 * 2 1 3 31 31 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 32 32 H 1.09004 * 109.46763 * 149.72387 * 7 6 5 33 33 H 1.08995 * 109.47483 * 29.72043 * 7 6 5 34 34 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 35 35 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 36 36 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 38 38 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 39 39 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 40 40 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 41 41 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 42 42 H 0.96998 * 120.00467 * 180.02562 * 17 16 14 43 43 H 1.08001 * 119.92140 * 180.25687 * 22 6 5 44 44 H 1.07998 * 120.00176 * 180.02562 * 23 22 6 45 45 H 0.96700 * 113.99629 * 89.99770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 -0.0069 6 6 5.5703 0.6107 -0.0021 7 6 6.4883 -0.5844 -0.0037 8 7 6.7877 -0.9736 1.3808 9 6 7.6828 -2.1379 1.4185 10 1 8.3846 -2.0837 0.5861 11 6 6.8563 -3.4205 1.3060 12 6 8.4565 -2.1439 2.7384 13 6 9.3774 -0.9233 2.7953 14 6 10.1399 -0.9296 4.0952 15 1 9.9831 -1.7243 4.8094 16 6 11.0378 0.0794 4.3726 17 7 11.7029 0.0742 5.5071 18 14 11.3095 1.4536 3.1369 19 1 10.3597 2.5615 3.4119 20 1 12.7024 1.9555 3.2530 21 1 11.0826 0.9365 1.7635 22 6 6.1003 1.8876 -0.0016 23 6 5.2623 2.9871 -0.0010 24 6 3.8879 2.8107 -0.0004 25 8 3.0622 3.8913 -0.0004 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7886 -0.5708 -0.0110 32 1 7.4150 -0.3299 -0.5181 33 1 6.0035 -1.4143 -0.5176 34 1 7.1791 -0.2002 1.8973 35 1 6.3051 -3.4163 0.3656 36 1 7.5204 -4.2843 1.3335 37 1 6.1545 -3.4747 2.1382 38 1 7.7543 -2.1085 3.5713 39 1 9.0539 -3.0531 2.8053 40 1 10.0796 -0.9588 1.9624 41 1 8.7800 -0.0141 2.7285 42 1 12.3342 0.7842 5.7025 43 1 7.1713 2.0264 -0.0020 44 1 5.6789 3.9836 -0.0010 45 1 2.8231 4.2036 -0.8838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:09 Heat of formation + Delta-G solvation = -74.405889 kcal Electronic energy + Delta-G solvation = -23325.426019 eV Core-core repulsion = 19921.732098 eV Total energy + Delta-G solvation = -3403.693921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56247 -38.23538 -37.66445 -36.43508 -33.36989 -32.27609 -31.85353 -30.28679 -29.77983 -28.62591 -25.64083 -24.70359 -23.96823 -21.91564 -21.46082 -21.07393 -19.67329 -18.73088 -17.55634 -16.87874 -16.45352 -16.38182 -15.58221 -15.40503 -15.05977 -14.52639 -14.23735 -14.03601 -13.91987 -13.36114 -13.20472 -12.89640 -12.84377 -12.76330 -12.51144 -12.21030 -12.01899 -11.80659 -11.77942 -11.58948 -11.43507 -11.15481 -10.96555 -10.87159 -10.64458 -10.51240 -9.98298 -9.79158 -9.47961 -9.19924 -8.86927 -8.55703 -8.27907 -8.08688 -6.05436 -4.03367 1.07846 1.28573 2.96392 3.28435 3.35770 3.37189 3.47473 4.07005 4.42993 4.49602 4.61501 4.65108 4.79858 4.82614 4.95523 5.02611 5.22675 5.27013 5.28022 5.33643 5.49189 5.49684 5.52066 5.56362 5.65419 5.73623 5.77489 5.80179 6.06064 6.07007 6.19025 6.20254 6.35741 6.39145 6.50148 6.58503 6.70439 6.82816 7.08781 7.23657 7.25030 7.47149 7.61966 7.69026 7.78380 8.53121 9.00117 9.56920 11.08182 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003684 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.694461 B = 7599.102998 C = 8761.390919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.309 6.309 4 C 0.103 3.897 5 C -0.173 4.173 6 C -0.043 4.043 7 C 0.095 3.905 8 N -0.682 5.682 9 C 0.079 3.921 10 H 0.039 0.961 11 C -0.136 4.136 12 C -0.106 4.106 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.268 1.268 22 C -0.135 4.135 23 C -0.105 4.105 24 C 0.067 3.933 25 O -0.487 6.487 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.352 0.648 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.012 0.988 41 H 0.009 0.991 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.135 0.865 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.316 0.957 -16.854 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.057 3.943 5 C -0.192 4.192 6 C -0.044 4.044 7 C -0.034 4.034 8 N -0.316 5.316 9 C -0.030 4.030 10 H 0.057 0.943 11 C -0.194 4.194 12 C -0.144 4.144 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.154 4.154 23 C -0.123 4.123 24 C 0.022 3.978 25 O -0.295 6.295 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.173 0.827 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.861 0.750 -16.053 25.549 hybrid contribution 1.171 1.066 -1.243 2.014 sum -18.690 1.816 -17.297 25.531 Atomic orbital electron populations 1.21761 0.92752 1.02805 1.03445 1.22815 0.95847 0.82109 1.01607 1.86121 1.18424 1.29083 1.88663 1.19374 0.82819 0.93581 0.98491 1.21006 0.93351 0.97776 1.07116 1.19683 0.93327 0.94601 0.96782 1.20929 0.96478 0.94306 0.91657 1.60654 1.49614 1.10079 1.11278 1.21684 0.92206 0.90239 0.98884 0.94289 1.21780 0.99905 0.96515 1.01187 1.21661 0.97770 1.00349 0.94617 1.19609 0.94548 0.93274 0.97773 1.21122 1.22051 1.10381 1.02111 0.90989 1.25046 0.95474 0.97860 0.95129 1.69911 1.27076 1.33792 1.23429 0.86793 0.77481 0.82698 0.82395 1.20163 1.21392 1.19229 1.20944 1.00134 0.91501 1.02789 1.21211 0.91420 0.99889 0.99788 1.17731 0.88774 0.83875 1.07444 1.84912 1.66730 1.44958 1.32932 0.91697 0.90370 0.91450 0.92145 0.91698 0.84975 0.94207 0.90470 0.82672 0.93801 0.92784 0.92205 0.91822 0.91993 0.96976 0.97318 0.92738 0.85413 0.84728 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.75 9.92 -34.22 -0.34 -4.09 16 4 C 0.10 1.33 6.70 -39.12 -0.26 1.07 16 5 C -0.17 -2.13 8.69 -39.46 -0.34 -2.48 16 6 C -0.04 -0.56 5.39 -104.62 -0.56 -1.12 16 7 C 0.10 1.24 5.61 -4.98 -0.03 1.21 16 8 N -0.68 -10.56 6.30 -107.99 -0.68 -11.24 16 9 C 0.08 1.25 2.65 -67.71 -0.18 1.08 16 10 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 11 C -0.14 -1.82 9.41 37.16 0.35 -1.47 16 12 C -0.11 -2.07 4.74 -26.73 -0.13 -2.19 16 13 C -0.01 -0.34 3.87 -27.88 -0.11 -0.45 16 14 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.13 -1.72 9.69 -39.57 -0.38 -2.10 16 23 C -0.10 -1.27 9.98 -39.46 -0.39 -1.67 16 24 C 0.07 0.86 6.72 -39.12 -0.26 0.60 16 25 O -0.49 -5.73 13.29 -34.23 -0.45 -6.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.46 7.65 -51.92 -0.40 0.06 16 30 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 31 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 32 H 0.04 0.51 8.00 -51.93 -0.42 0.10 16 33 H 0.08 0.90 7.38 -51.93 -0.38 0.52 16 34 H 0.35 6.08 6.46 -39.29 -0.25 5.83 16 35 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 41 H 0.01 0.20 5.85 -51.93 -0.30 -0.10 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.38 2.61 9.06 45.56 0.41 3.03 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -32.82 366.26 -8.62 -41.45 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.63 Total: 5.60 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.15 Total: -20.81 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.09 Total: -38.50 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.79 Total: -10.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.82 -8.62 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.960 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds