Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46774 * 2 1 4 4 C 1.35994 * 116.99843 * 180.02562 * 3 2 1 5 5 C 1.38570 * 120.07453 * 0.27775 * 4 3 2 6 6 C 1.38244 * 119.99707 * 180.25666 * 5 4 3 7 7 C 1.50697 * 119.92146 * 179.76789 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.71945 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00036 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47157 * 90.00226 * 18 16 14 20 20 H 1.48508 * 109.47051 * 210.00094 * 18 16 14 21 21 H 1.48499 * 109.47294 * 329.99827 * 18 16 14 22 22 C 1.38253 * 120.14621 * 359.48989 * 6 5 4 23 23 C 1.38240 * 120.14906 * 0.23370 * 22 6 5 24 24 C 1.38569 * 119.99661 * 0.02562 * 23 22 6 25 25 O 1.35995 * 120.06890 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47611 * 60.00250 * 1 2 3 27 27 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47231 * 299.99089 * 1 2 3 29 29 H 1.09009 * 109.46894 * 240.00690 * 2 1 3 30 30 H 1.08992 * 109.47434 * 120.00263 * 2 1 3 31 31 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 32 32 H 1.09004 * 109.46763 * 149.72387 * 7 6 5 33 33 H 1.08995 * 109.47483 * 29.72043 * 7 6 5 34 34 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 35 35 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 36 36 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 38 38 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 39 39 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 40 40 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 41 41 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 42 42 H 0.96998 * 120.00467 * 180.02562 * 17 16 14 43 43 H 1.08001 * 119.92140 * 180.25687 * 22 6 5 44 44 H 1.07998 * 120.00176 * 180.02562 * 23 22 6 45 45 H 0.96700 * 113.99629 * 89.99770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 -0.0069 6 6 5.5703 0.6107 -0.0021 7 6 6.4883 -0.5844 -0.0037 8 7 6.7877 -0.9736 1.3808 9 6 7.6828 -2.1379 1.4185 10 1 8.3846 -2.0837 0.5861 11 6 6.8563 -3.4205 1.3060 12 6 8.4565 -2.1439 2.7384 13 6 9.3774 -0.9233 2.7953 14 6 10.1399 -0.9296 4.0952 15 1 9.9831 -1.7243 4.8094 16 6 11.0378 0.0794 4.3726 17 7 11.7029 0.0742 5.5071 18 14 11.3095 1.4536 3.1369 19 1 10.3597 2.5615 3.4119 20 1 12.7024 1.9555 3.2530 21 1 11.0826 0.9365 1.7635 22 6 6.1003 1.8876 -0.0016 23 6 5.2623 2.9871 -0.0010 24 6 3.8879 2.8107 -0.0004 25 8 3.0622 3.8913 -0.0004 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7886 -0.5708 -0.0110 32 1 7.4150 -0.3299 -0.5181 33 1 6.0035 -1.4143 -0.5176 34 1 7.1791 -0.2002 1.8973 35 1 6.3051 -3.4163 0.3656 36 1 7.5204 -4.2843 1.3335 37 1 6.1545 -3.4747 2.1382 38 1 7.7543 -2.1085 3.5713 39 1 9.0539 -3.0531 2.8053 40 1 10.0796 -0.9588 1.9624 41 1 8.7800 -0.0141 2.7285 42 1 12.3342 0.7842 5.7025 43 1 7.1713 2.0264 -0.0020 44 1 5.6789 3.9836 -0.0010 45 1 2.8231 4.2036 -0.8838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = -96.625638 kcal Electronic energy + Delta-G solvation = -23326.389540 eV Core-core repulsion = 19921.732098 eV Total energy + Delta-G solvation = -3404.657441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44239 -39.18901 -38.70485 -37.51444 -35.22764 -33.62929 -32.69037 -31.68581 -30.88749 -29.63832 -27.24668 -25.83171 -24.82047 -22.92928 -22.69360 -22.29463 -21.11716 -19.61640 -18.98026 -18.37494 -17.46720 -17.17138 -16.64764 -16.55369 -16.35577 -16.10243 -15.39115 -15.05461 -14.83826 -14.75878 -14.51965 -14.20637 -13.99803 -13.70371 -13.41552 -13.37283 -13.24519 -13.03396 -12.89818 -12.80400 -12.61353 -12.42516 -12.12164 -11.95004 -11.78618 -11.64849 -11.54477 -11.48295 -11.36727 -11.10958 -10.76981 -9.79133 -9.37100 -9.07350 -8.30210 -6.34258 0.15784 0.36431 1.34099 1.35919 1.46931 2.19091 2.34677 2.55683 3.04985 3.22122 3.41533 3.71745 3.88836 4.03298 4.04713 4.11469 4.15041 4.28992 4.32913 4.37406 4.44907 4.54524 4.57207 4.64535 4.73940 4.87927 4.89041 4.90783 4.93612 5.01551 5.04441 5.12029 5.13462 5.23808 5.28199 5.43365 5.51860 5.55219 5.57254 5.66432 5.70891 6.19423 6.28277 6.29917 6.40854 6.74270 6.87293 7.30171 8.86905 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003684 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.694461 B = 7599.102998 C = 8761.390919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.324 6.324 4 C 0.091 3.909 5 C -0.173 4.173 6 C -0.053 4.053 7 C 0.099 3.901 8 N -0.687 5.687 9 C 0.087 3.913 10 H 0.045 0.955 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.008 4.008 14 C -0.532 4.532 15 H 0.029 0.971 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.244 1.244 22 C -0.144 4.144 23 C -0.109 4.109 24 C 0.057 3.943 25 O -0.500 6.500 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.339 0.661 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.018 0.982 42 H 0.266 0.734 43 H 0.133 0.867 44 H 0.150 0.850 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.477 1.257 -19.438 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.238 6.238 4 C 0.045 3.955 5 C -0.193 4.193 6 C -0.054 4.054 7 C -0.030 4.030 8 N -0.321 5.321 9 C -0.022 4.022 10 H 0.063 0.937 11 C -0.188 4.188 12 C -0.137 4.137 13 C -0.046 4.046 14 C -0.570 4.570 15 H 0.047 0.953 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.168 1.168 22 C -0.163 4.163 23 C -0.127 4.127 24 C 0.012 3.988 25 O -0.311 6.311 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.151 0.849 44 H 0.167 0.833 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -21.053 1.029 -18.668 28.157 hybrid contribution 1.469 0.928 -0.370 1.777 sum -19.584 1.958 -19.039 27.383 Atomic orbital electron populations 1.21789 0.91308 1.04155 1.03156 1.23075 0.97035 0.80895 1.02138 1.86111 1.18082 1.31023 1.88623 1.19544 0.83332 0.93861 0.98735 1.21140 0.93158 0.98319 1.06651 1.19736 0.93563 0.94648 0.97431 1.20968 0.96812 0.94989 0.90203 1.60706 1.49065 1.09455 1.12848 1.21580 0.92493 0.91763 0.96388 0.93742 1.21722 0.99709 0.95262 1.02087 1.21535 0.97153 0.98370 0.96664 1.19528 0.94755 0.95515 0.94796 1.21510 1.22739 1.09162 1.03556 0.95253 1.26067 0.95115 1.00984 0.97315 1.70076 1.28224 1.35182 1.25910 0.85640 0.77519 0.78967 0.80423 1.19054 1.21144 1.16771 1.21098 1.00529 0.91741 1.02951 1.21388 0.91266 1.00564 0.99514 1.17939 0.89211 0.84253 1.07405 1.84845 1.66642 1.44729 1.34900 0.91440 0.88189 0.92262 0.90739 0.91951 0.83685 0.93832 0.88778 0.84085 0.91637 0.92005 0.92812 0.93221 0.92455 0.96540 0.96349 0.92549 0.84941 0.83278 0.74050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.04 0.69 5.46 71.98 0.39 1.08 16 3 O -0.32 -7.49 9.92 -79.61 -0.79 -8.28 16 4 C 0.09 2.23 6.70 22.57 0.15 2.38 16 5 C -0.17 -3.96 8.69 22.35 0.19 -3.76 16 6 C -0.05 -1.27 5.39 -19.86 -0.11 -1.37 16 7 C 0.10 2.29 5.61 85.56 0.48 2.77 16 8 N -0.69 -19.84 6.30 -495.56 -3.12 -22.96 16 9 C 0.09 2.57 2.65 44.91 0.12 2.69 16 10 H 0.04 1.28 7.80 -2.38 -0.02 1.27 16 11 C -0.13 -3.13 9.41 71.98 0.68 -2.46 16 12 C -0.10 -3.81 4.74 30.60 0.15 -3.67 16 13 C -0.01 -0.39 3.87 29.85 0.12 -0.27 16 14 C -0.53 -30.98 9.66 25.60 0.25 -30.74 16 15 H 0.03 1.89 7.99 -2.92 -0.02 1.87 16 16 C 0.00 0.10 5.47 84.66 0.46 0.56 16 17 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 18 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 22 C -0.14 -3.43 9.69 22.27 0.22 -3.22 16 23 C -0.11 -2.49 9.98 22.35 0.22 -2.27 16 24 C 0.06 1.40 6.72 22.57 0.15 1.55 16 25 O -0.50 -11.16 13.29 -79.63 -1.06 -12.22 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.97 7.65 -2.38 -0.02 0.95 16 30 H 0.06 1.02 7.68 -2.39 -0.02 1.00 16 31 H 0.15 2.80 6.30 -2.91 -0.02 2.79 16 32 H 0.04 0.99 8.00 -2.39 -0.02 0.98 16 33 H 0.09 1.86 7.38 -2.39 -0.02 1.84 16 34 H 0.34 11.18 6.46 -89.69 -0.58 10.60 16 35 H 0.06 1.31 7.45 -2.38 -0.02 1.29 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 40 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 41 H 0.02 0.82 5.85 -2.39 -0.01 0.80 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.40 4.96 9.06 -74.06 -0.67 4.29 16 Total: -1.00 -71.53 366.26 1.10 -70.42 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.32 Total: 24.95 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.21 Total: -37.71 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.82 Total: -83.35 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.85 Total: -20.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -71.53 1.10 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.201 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds