Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07290 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99817 * 179.70494 * 5 4 3 7 7 C 1.50704 * 119.92837 * 180.30239 * 6 5 4 8 8 N 1.46897 * 109.46838 * 270.25420 * 7 6 5 9 9 C 1.46897 * 110.99897 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47244 * 325.00149 * 9 8 7 11 11 C 1.53002 * 109.47360 * 84.99731 * 9 8 7 12 12 C 1.52996 * 109.47370 * 204.99902 * 9 8 7 13 13 C 1.52999 * 109.47117 * 64.99982 * 12 9 8 14 14 C 1.50696 * 109.47350 * 180.02562 * 13 12 9 15 15 H 1.07996 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00353 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99550 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00366 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47164 * 90.00253 * 18 16 14 20 20 H 1.48502 * 109.47215 * 210.00099 * 18 16 14 21 21 H 1.48504 * 109.47113 * 330.00296 * 18 16 14 22 22 C 1.38252 * 120.14640 * 0.55556 * 6 5 4 23 23 C 1.38243 * 120.14586 * 359.44600 * 22 6 5 24 24 C 1.38573 * 119.99981 * 0.27715 * 23 22 6 25 25 O 1.35988 * 120.07412 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 27 27 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 29 29 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 30 30 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 31 31 H 1.07994 * 120.00507 * 359.97438 * 5 4 3 32 32 H 1.08996 * 109.46795 * 30.25496 * 7 6 5 33 33 H 1.09002 * 109.46824 * 150.25302 * 7 6 5 34 34 H 1.00899 * 111.00018 * 303.95064 * 8 7 6 35 35 H 1.09000 * 109.46787 * 59.99719 * 11 9 8 36 36 H 1.09000 * 109.47075 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46949 * 300.00482 * 11 9 8 38 38 H 1.09000 * 109.47591 * 185.00117 * 12 9 8 39 39 H 1.09003 * 109.47328 * 304.99912 * 12 9 8 40 40 H 1.08999 * 109.47036 * 299.99942 * 13 12 9 41 41 H 1.08995 * 109.47245 * 60.00094 * 13 12 9 42 42 H 0.97003 * 119.99502 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.93071 * 179.72702 * 22 6 5 44 44 H 1.07997 * 120.00101 * 180.29797 * 23 22 6 45 45 H 0.96697 * 113.99986 * 89.99974 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.4883 -0.5845 -0.0163 8 7 6.7890 -0.9802 1.3660 9 6 7.6841 -2.1445 1.3974 10 1 7.4505 -2.8050 0.5623 11 6 9.1359 -1.6749 1.2855 12 6 7.4924 -2.8998 2.7141 13 6 6.0763 -3.4763 2.7699 14 6 5.8873 -4.2198 4.0670 15 1 6.6964 -4.2759 4.7801 16 6 4.6814 -4.8284 4.3434 17 7 3.6962 -4.7605 3.4748 18 14 4.4474 -5.7505 5.9510 19 1 3.9311 -4.8186 6.9856 20 1 3.4756 -6.8555 5.7509 21 1 5.7493 -6.3105 6.3945 22 6 6.1003 1.8875 -0.0024 23 6 5.2624 2.9870 -0.0013 24 6 3.8879 2.8107 -0.0003 25 8 3.0623 3.8913 0.0002 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7885 -0.5708 -0.0016 32 1 6.0029 -1.4119 -0.5338 33 1 7.4145 -0.3276 -0.5305 34 1 7.1808 -0.2092 1.8857 35 1 9.3695 -1.0144 2.1205 36 1 9.8000 -2.5389 1.3084 37 1 9.2724 -1.1368 0.3475 38 1 8.2177 -3.7111 2.7765 39 1 7.6395 -2.2159 3.5500 40 1 5.3510 -2.6651 2.7075 41 1 5.9292 -4.1602 1.9340 42 1 2.8480 -5.1890 3.6691 43 1 7.1714 2.0263 -0.0032 44 1 5.6790 3.9834 -0.0015 45 1 2.8229 4.2038 -0.8830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -76.453227 kcal Electronic energy + Delta-G solvation = -23427.112597 eV Core-core repulsion = 20023.329897 eV Total energy + Delta-G solvation = -3403.782700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40567 -38.06086 -37.54029 -36.28643 -33.31063 -32.09881 -31.64185 -30.10379 -29.35805 -28.31628 -25.28670 -24.58950 -23.82807 -21.73038 -21.44216 -21.19721 -19.80269 -18.60148 -17.36187 -16.35410 -16.14567 -16.10771 -15.48315 -15.18033 -14.91313 -14.37756 -14.20844 -13.91873 -13.73509 -13.27062 -13.00936 -12.79746 -12.60153 -12.46060 -12.37725 -12.18005 -11.86759 -11.67342 -11.47311 -11.36082 -11.18603 -11.03121 -10.82115 -10.67219 -10.51628 -10.44121 -10.17875 -9.63272 -9.21044 -8.90630 -8.74063 -8.23545 -8.10121 -7.85176 -5.88963 -3.89404 1.19543 1.40465 3.18411 3.37375 3.43291 3.46534 3.59140 4.17743 4.54284 4.61084 4.79209 4.90294 4.96562 5.06779 5.14850 5.28983 5.30960 5.34738 5.47045 5.50050 5.54283 5.55988 5.67260 5.73971 5.79626 5.82153 5.89836 6.01566 6.08445 6.22178 6.26073 6.27008 6.39673 6.61501 6.66827 6.72242 6.89492 7.25718 7.30624 7.47456 7.73176 7.78934 7.84870 8.08005 8.23286 8.58065 9.19391 9.73153 11.22233 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.004264 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.834085 B = 6564.264550 C = 8471.441452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.310 6.310 4 C 0.108 3.892 5 C -0.168 4.168 6 C -0.042 4.042 7 C 0.097 3.903 8 N -0.665 5.665 9 C 0.083 3.917 10 H 0.072 0.928 11 C -0.181 4.181 12 C -0.098 4.098 13 C 0.030 3.970 14 C -0.517 4.517 15 H 0.050 0.950 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.140 4.140 23 C -0.109 4.109 24 C 0.064 3.936 25 O -0.487 6.487 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.337 0.663 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.006 0.994 42 H 0.257 0.743 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 14.122 -12.439 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.224 6.224 4 C 0.061 3.939 5 C -0.187 4.187 6 C -0.043 4.043 7 C -0.031 4.031 8 N -0.295 5.295 9 C -0.026 4.026 10 H 0.090 0.910 11 C -0.240 4.240 12 C -0.136 4.136 13 C -0.007 4.007 14 C -0.556 4.556 15 H 0.069 0.931 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.159 4.159 23 C -0.128 4.128 24 C 0.019 3.981 25 O -0.296 6.296 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.025 0.975 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.684 13.746 -11.781 18.117 hybrid contribution 0.674 -0.329 0.188 0.773 sum 1.358 13.417 -11.593 17.784 Atomic orbital electron populations 1.21749 0.92746 1.03004 1.03085 1.22882 0.95880 0.81602 1.02240 1.86098 1.18241 1.29619 1.88424 1.19421 0.83112 0.93508 0.97823 1.21162 0.93470 0.98298 1.05765 1.19682 0.93439 0.94442 0.96708 1.20917 0.95988 0.94679 0.91554 1.60564 1.49240 1.08738 1.11003 1.21766 0.88125 0.91941 1.00760 0.90963 1.22542 0.99220 1.01563 1.00650 1.21627 1.01144 0.97342 0.93510 1.18991 0.90456 0.95593 0.95705 1.21357 0.97867 1.32632 1.03717 0.93127 1.24982 0.96206 0.96650 0.96529 1.69977 1.03569 1.44950 1.35076 0.86691 0.77831 0.79602 0.84423 1.20784 1.21364 1.20028 1.20805 0.99573 0.91492 1.04031 1.21124 0.91458 0.99584 1.00586 1.17727 0.88778 0.83844 1.07774 1.84908 1.66829 1.44969 1.32870 0.91954 0.90143 0.91534 0.92024 0.90973 0.84439 0.90140 0.94747 0.84513 0.92743 0.92209 0.93731 0.93487 0.93464 0.94957 0.97538 0.93322 0.85850 0.85053 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.05 0.62 5.46 37.16 0.20 0.83 16 3 O -0.31 -4.55 9.92 -34.21 -0.34 -4.89 16 4 C 0.11 1.58 6.70 -39.12 -0.26 1.32 16 5 C -0.17 -2.47 8.69 -39.46 -0.34 -2.81 16 6 C -0.04 -0.57 5.39 -104.61 -0.56 -1.14 16 7 C 0.10 1.32 5.60 -4.98 -0.03 1.30 16 8 N -0.67 -10.65 5.69 -107.99 -0.61 -11.26 16 9 C 0.08 1.37 2.59 -67.72 -0.18 1.20 16 10 H 0.07 1.22 7.80 -51.92 -0.41 0.82 16 11 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 12 C -0.10 -2.03 4.83 -26.73 -0.13 -2.15 16 13 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.14 -1.66 9.69 -39.57 -0.38 -2.04 16 23 C -0.11 -1.28 9.98 -39.46 -0.39 -1.68 16 24 C 0.06 0.87 6.72 -39.12 -0.26 0.60 16 25 O -0.49 -6.04 13.29 -34.21 -0.45 -6.50 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.07 1.03 7.66 -51.93 -0.40 0.63 16 31 H 0.14 2.07 6.30 -52.49 -0.33 1.74 16 32 H 0.08 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.03 0.41 7.38 -51.93 -0.38 0.02 16 34 H 0.34 5.04 8.46 -39.29 -0.33 4.70 16 35 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.38 2.83 9.06 45.56 0.41 3.25 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -33.13 372.40 -9.05 -42.18 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.81 Total: 5.17 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.16 Total: -20.87 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.12 Total: -37.79 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.79 Total: -11.38 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.13 -9.05 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.273 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds