Wall clock time and date at job start Tue Mar 31 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07290 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99817 * 179.70494 * 5 4 3 7 7 C 1.50704 * 119.92837 * 180.30239 * 6 5 4 8 8 N 1.46897 * 109.46838 * 270.25420 * 7 6 5 9 9 C 1.46897 * 110.99897 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47244 * 325.00149 * 9 8 7 11 11 C 1.53002 * 109.47360 * 84.99731 * 9 8 7 12 12 C 1.52996 * 109.47370 * 204.99902 * 9 8 7 13 13 C 1.52999 * 109.47117 * 64.99982 * 12 9 8 14 14 C 1.50696 * 109.47350 * 180.02562 * 13 12 9 15 15 H 1.07996 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00353 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99550 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00366 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47164 * 90.00253 * 18 16 14 20 20 H 1.48502 * 109.47215 * 210.00099 * 18 16 14 21 21 H 1.48504 * 109.47113 * 330.00296 * 18 16 14 22 22 C 1.38252 * 120.14640 * 0.55556 * 6 5 4 23 23 C 1.38243 * 120.14586 * 359.44600 * 22 6 5 24 24 C 1.38573 * 119.99981 * 0.27715 * 23 22 6 25 25 O 1.35988 * 120.07412 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 27 27 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 29 29 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 30 30 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 31 31 H 1.07994 * 120.00507 * 359.97438 * 5 4 3 32 32 H 1.08996 * 109.46795 * 30.25496 * 7 6 5 33 33 H 1.09002 * 109.46824 * 150.25302 * 7 6 5 34 34 H 1.00899 * 111.00018 * 303.95064 * 8 7 6 35 35 H 1.09000 * 109.46787 * 59.99719 * 11 9 8 36 36 H 1.09000 * 109.47075 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46949 * 300.00482 * 11 9 8 38 38 H 1.09000 * 109.47591 * 185.00117 * 12 9 8 39 39 H 1.09003 * 109.47328 * 304.99912 * 12 9 8 40 40 H 1.08999 * 109.47036 * 299.99942 * 13 12 9 41 41 H 1.08995 * 109.47245 * 60.00094 * 13 12 9 42 42 H 0.97003 * 119.99502 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.93071 * 179.72702 * 22 6 5 44 44 H 1.07997 * 120.00101 * 180.29797 * 23 22 6 45 45 H 0.96697 * 113.99986 * 89.99974 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.4883 -0.5845 -0.0163 8 7 6.7890 -0.9802 1.3660 9 6 7.6841 -2.1445 1.3974 10 1 7.4505 -2.8050 0.5623 11 6 9.1359 -1.6749 1.2855 12 6 7.4924 -2.8998 2.7141 13 6 6.0763 -3.4763 2.7699 14 6 5.8873 -4.2198 4.0670 15 1 6.6964 -4.2759 4.7801 16 6 4.6814 -4.8284 4.3434 17 7 3.6962 -4.7605 3.4748 18 14 4.4474 -5.7505 5.9510 19 1 3.9311 -4.8186 6.9856 20 1 3.4756 -6.8555 5.7509 21 1 5.7493 -6.3105 6.3945 22 6 6.1003 1.8875 -0.0024 23 6 5.2624 2.9870 -0.0013 24 6 3.8879 2.8107 -0.0003 25 8 3.0623 3.8913 0.0002 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7885 -0.5708 -0.0016 32 1 6.0029 -1.4119 -0.5338 33 1 7.4145 -0.3276 -0.5305 34 1 7.1808 -0.2092 1.8857 35 1 9.3695 -1.0144 2.1205 36 1 9.8000 -2.5389 1.3084 37 1 9.2724 -1.1368 0.3475 38 1 8.2177 -3.7111 2.7765 39 1 7.6395 -2.2159 3.5500 40 1 5.3510 -2.6651 2.7075 41 1 5.9292 -4.1602 1.9340 42 1 2.8480 -5.1890 3.6691 43 1 7.1714 2.0263 -0.0032 44 1 5.6790 3.9834 -0.0015 45 1 2.8229 4.2038 -0.8830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:10 Heat of formation + Delta-G solvation = -98.440067 kcal Electronic energy + Delta-G solvation = -23428.066018 eV Core-core repulsion = 20023.329897 eV Total energy + Delta-G solvation = -3404.736121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43180 -39.16275 -38.65739 -37.44423 -35.28428 -33.51142 -32.70498 -31.47742 -30.69378 -29.46012 -27.02015 -25.87607 -24.84280 -23.19145 -22.69899 -22.33882 -21.34628 -19.60124 -18.45707 -18.30450 -17.40384 -17.19918 -16.63975 -16.48433 -16.34423 -15.98798 -15.32447 -15.00231 -14.78394 -14.55974 -14.34095 -14.11181 -14.02088 -13.71995 -13.47190 -13.40363 -13.13539 -12.97120 -12.85419 -12.78467 -12.60267 -12.40580 -12.32650 -12.11385 -11.77747 -11.66092 -11.52489 -11.46973 -11.20999 -10.95675 -10.48401 -9.77021 -9.20451 -9.00577 -8.14096 -6.23979 0.18044 0.39044 1.38938 1.40571 1.51092 2.17099 2.43171 2.58435 3.18372 3.23564 3.46787 3.74847 3.91960 3.96864 4.06356 4.10756 4.12428 4.31397 4.34271 4.38638 4.47545 4.54774 4.58547 4.67209 4.80542 4.85311 4.88679 4.92762 5.00656 5.06280 5.12343 5.13035 5.22758 5.29522 5.31413 5.47995 5.59085 5.60557 5.75701 5.89232 6.03067 6.25273 6.27099 6.35112 6.63330 6.89060 6.95757 7.43948 8.97153 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.004264 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.834085 B = 6564.264550 C = 8471.441452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.322 6.322 4 C 0.083 3.917 5 C -0.185 4.185 6 C -0.053 4.053 7 C 0.105 3.895 8 N -0.689 5.689 9 C 0.091 3.909 10 H 0.062 0.938 11 C -0.168 4.168 12 C -0.089 4.089 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.130 4.130 23 C -0.103 4.103 24 C 0.059 3.941 25 O -0.499 6.499 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.344 0.656 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.001 0.999 41 H -0.023 1.023 42 H 0.260 0.740 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 15.370 -12.336 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.236 6.236 4 C 0.037 3.963 5 C -0.205 4.205 6 C -0.054 4.054 7 C -0.024 4.024 8 N -0.320 5.320 9 C -0.019 4.019 10 H 0.080 0.920 11 C -0.227 4.227 12 C -0.127 4.127 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.148 4.148 23 C -0.121 4.121 24 C 0.013 3.987 25 O -0.310 6.310 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.020 0.980 41 H -0.005 1.005 42 H 0.069 0.931 43 H 0.172 0.828 44 H 0.180 0.820 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.379 15.007 -11.696 19.175 hybrid contribution 0.108 -0.676 0.124 0.696 sum 2.488 14.331 -11.572 18.587 Atomic orbital electron populations 1.21759 0.90806 1.03956 1.03532 1.22950 0.97406 0.81087 1.01327 1.86068 1.18588 1.30251 1.88726 1.19702 0.83090 0.94298 0.99195 1.21142 0.94504 0.97658 1.07179 1.19764 0.92754 0.95431 0.97463 1.20845 0.97025 0.94236 0.90258 1.60408 1.49755 1.08999 1.12873 1.21534 0.90842 0.91832 0.97662 0.91968 1.22386 0.96040 1.02061 1.02214 1.21462 0.97299 0.97714 0.96193 1.18812 0.93403 0.93845 0.93731 1.21824 0.98298 1.33180 1.04811 0.92739 1.25923 0.95855 0.97554 1.00391 1.70119 1.04109 1.45778 1.37224 0.85551 0.78250 0.78240 0.79620 1.20072 1.20707 1.18749 1.21112 1.01129 0.90409 1.02172 1.21458 0.90540 1.01019 0.99109 1.17977 0.89751 0.83529 1.07405 1.84840 1.66857 1.44395 1.34919 0.90511 0.88933 0.91993 0.91303 0.93612 0.86350 0.91824 0.91811 0.83724 0.91982 0.91718 0.91414 0.93124 0.93614 0.98015 1.00451 0.93095 0.82804 0.82040 0.74030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 10.28 71.98 0.74 -2.34 16 2 C 0.05 1.30 5.46 71.98 0.39 1.69 16 3 O -0.32 -9.88 9.92 -79.56 -0.79 -10.67 16 4 C 0.08 2.51 6.70 22.57 0.15 2.66 16 5 C -0.19 -5.73 8.69 22.35 0.19 -5.53 16 6 C -0.05 -1.43 5.39 -19.86 -0.11 -1.54 16 7 C 0.10 2.78 5.60 85.56 0.48 3.26 16 8 N -0.69 -21.87 5.69 -495.58 -2.82 -24.69 16 9 C 0.09 2.93 2.59 44.92 0.12 3.05 16 10 H 0.06 2.12 7.80 -2.38 -0.02 2.10 16 11 C -0.17 -3.94 9.16 71.98 0.66 -3.28 16 12 C -0.09 -3.68 4.83 30.59 0.15 -3.53 16 13 C 0.04 2.14 4.86 29.85 0.15 2.29 16 14 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 15 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 16 C 0.00 0.00 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 18 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 C -0.13 -2.74 9.69 22.27 0.22 -2.53 16 23 C -0.10 -2.17 9.98 22.35 0.22 -1.94 16 24 C 0.06 1.54 6.72 22.57 0.15 1.69 16 25 O -0.50 -11.74 13.29 -79.54 -1.06 -12.80 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 30 H 0.05 1.46 7.66 -2.39 -0.02 1.44 16 31 H 0.12 3.98 6.30 -2.91 -0.02 3.96 16 32 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 33 H 0.06 1.32 7.38 -2.39 -0.02 1.31 16 34 H 0.34 9.84 8.46 -89.69 -0.76 9.08 16 35 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.00 0.08 7.75 -2.39 -0.02 0.07 16 41 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.40 5.39 9.06 -74.06 -0.67 4.72 16 Total: -1.00 -73.46 372.40 1.40 -72.06 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.45 Total: 23.94 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.21 Total: -37.47 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -2.54 Total: -82.79 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.85 Total: -23.47 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.46 1.40 -72.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.380 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds