Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.52998 * 109.47437 * 120.00232 * 2 1 3 5 5 C 1.52997 * 109.47325 * 185.00137 * 4 2 1 6 6 C 1.50703 * 109.47030 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00183 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99780 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00067 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99827 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47242 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47368 * 120.00152 * 10 8 6 13 13 H 1.48509 * 109.47099 * 240.00164 * 10 8 6 14 14 N 1.46903 * 109.47003 * 240.00393 * 2 1 3 15 15 C 1.46898 * 111.00274 * 84.15102 * 14 2 1 16 16 H 1.08994 * 109.47438 * 325.98073 * 15 14 2 17 17 C 1.53003 * 109.46657 * 85.98344 * 15 14 2 18 18 C 1.53005 * 109.46718 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47116 * 299.99337 * 18 17 15 20 20 H 1.08994 * 109.47143 * 300.00534 * 19 18 17 21 21 C 1.52992 * 109.47129 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47219 * 60.00096 * 21 19 18 23 23 F 1.39902 * 109.47360 * 180.02562 * 21 19 18 24 24 F 1.39905 * 109.47386 * 300.00360 * 21 19 18 25 25 C 1.53004 * 109.46611 * 60.00175 * 19 18 17 26 26 C 1.52992 * 109.47379 * 299.99853 * 25 19 18 27 27 H 1.09001 * 109.47206 * 184.81381 * 1 2 3 28 28 H 1.08993 * 109.47176 * 304.81485 * 1 2 3 29 29 H 1.09004 * 109.47385 * 64.81833 * 1 2 3 30 30 H 1.09003 * 109.46776 * 304.99747 * 4 2 1 31 31 H 1.09003 * 109.46923 * 64.99729 * 4 2 1 32 32 H 1.09003 * 109.46875 * 299.99550 * 5 4 2 33 33 H 1.09000 * 109.47129 * 59.99498 * 5 4 2 34 34 H 0.96996 * 119.99601 * 180.02562 * 9 8 6 35 35 H 1.00904 * 110.99695 * 320.19656 * 14 2 1 36 36 H 1.09006 * 109.47071 * 299.99738 * 17 15 14 37 37 H 1.09003 * 109.47545 * 60.00019 * 17 15 14 38 38 H 1.08991 * 109.47311 * 60.00066 * 18 17 15 39 39 H 1.09005 * 109.46938 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47201 * 60.00016 * 25 19 18 41 41 H 1.09003 * 109.46589 * 179.97438 * 25 19 18 42 42 H 1.08994 * 109.47396 * 300.00266 * 26 25 19 43 43 H 1.08999 * 109.47498 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 1 3.3688 -1.8047 3.2129 8 6 5.4186 -1.3614 2.8149 9 7 6.2691 -0.7759 2.0003 10 14 6.0413 -2.2421 4.3400 11 1 4.8912 -2.8125 5.0865 12 1 6.9628 -3.3352 3.9389 13 1 6.7648 -1.2781 5.2076 14 7 2.0196 -0.6924 -1.1995 15 6 2.0633 0.2176 -2.3518 16 1 1.2406 0.9293 -2.2842 17 6 3.3933 0.9741 -2.3539 18 6 3.4386 1.9225 -3.5537 19 6 3.3090 1.1153 -4.8470 20 1 4.1318 0.4036 -4.9151 21 6 3.3550 2.0635 -6.0468 22 9 4.5712 2.7549 -6.0485 23 9 3.2360 1.3255 -7.2294 24 9 2.2992 2.9774 -5.9597 25 6 1.9792 0.3587 -4.8448 26 6 1.9338 -0.5896 -3.6451 27 1 -0.3634 -1.0240 0.0862 28 1 -0.3633 0.5867 0.8437 29 1 -0.3634 0.4373 -0.9300 30 1 1.6054 -0.2617 2.1369 31 1 1.7516 -1.7716 1.2055 32 1 3.9994 -1.0728 0.4259 33 1 3.8532 0.4370 1.3572 34 1 7.2197 -0.8024 2.1910 35 1 1.4578 -1.5057 -1.4022 36 1 3.4854 1.5496 -1.4327 37 1 4.2161 0.2624 -2.4216 38 1 2.6159 2.6342 -3.4856 39 1 4.3862 2.4611 -3.5555 40 1 1.1563 1.0704 -4.7767 41 1 1.8867 -0.2160 -5.7664 42 1 2.7566 -1.3012 -3.7132 43 1 0.9862 -1.1282 -3.6433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = -195.732500 kcal Electronic energy + Delta-G solvation = -24561.840417 eV Core-core repulsion = 20611.028639 eV Total energy + Delta-G solvation = -3950.811778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.24693 -47.73046 -47.70630 -39.16371 -36.49848 -33.31516 -32.01690 -30.94091 -29.60254 -28.17289 -25.24010 -24.70162 -23.02746 -21.78053 -21.08646 -20.05467 -19.62399 -18.40737 -18.36395 -17.67025 -16.11340 -15.81917 -15.12046 -14.76549 -14.66561 -14.42659 -14.35171 -14.16487 -13.91833 -13.87858 -13.86998 -13.63500 -13.32189 -13.03355 -12.60425 -12.37903 -12.35266 -12.12677 -11.86032 -11.56845 -11.39892 -11.22307 -11.14794 -10.93295 -10.81764 -10.52811 -10.40150 -10.16813 -10.11490 -9.60989 -9.20713 -8.87816 -8.23271 -7.88428 -5.88580 -3.89288 2.62647 3.36137 3.43647 3.47586 3.62703 3.84312 3.90001 4.37293 4.54072 4.54368 4.57527 4.99984 5.01927 5.10573 5.22133 5.31843 5.35405 5.43433 5.47250 5.53167 5.56632 5.67163 5.73327 5.74504 5.88507 6.04677 6.07967 6.13407 6.26507 6.34264 6.40908 6.59775 6.70029 6.89824 7.32184 7.53359 7.82217 7.85845 8.08556 8.23627 8.58426 9.19927 9.73423 11.22463 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.003408 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.008595 B = 8214.206761 C = 9104.342024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.668 5.668 15 C 0.088 3.912 16 H 0.040 0.960 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.131 4.131 20 H 0.116 0.884 21 C 0.452 3.548 22 F -0.184 7.184 23 F -0.187 7.187 24 F -0.185 7.185 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.006 0.994 34 H 0.257 0.743 35 H 0.335 0.665 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 4.726 -16.754 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.298 5.298 15 C -0.022 4.022 16 H 0.058 0.942 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.151 4.151 20 H 0.135 0.865 21 C 0.398 3.602 22 F -0.165 7.165 23 F -0.168 7.168 24 F -0.166 7.166 25 C -0.151 4.151 26 C -0.155 4.155 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.998 4.866 -16.635 19.528 hybrid contribution -0.467 -0.176 0.398 0.638 sum -9.465 4.689 -16.237 19.370 Atomic orbital electron populations 1.22545 0.98766 1.01646 1.01027 1.21766 0.90754 0.98390 0.91634 0.91023 1.21626 1.00647 0.98305 0.93059 1.18989 0.88251 0.96412 0.97001 1.21399 0.91836 1.33882 1.08496 0.93128 1.24986 0.97150 0.95788 0.96466 1.69983 1.02081 1.44457 1.36923 0.86646 0.78820 0.79550 0.83605 1.19905 1.21142 1.21198 1.60524 1.58197 1.08434 1.02633 1.21512 0.96878 0.94128 0.89722 0.94198 1.21490 0.98144 0.97887 0.96649 1.21647 1.03290 0.98146 0.92442 1.22569 1.03130 0.97225 0.92128 0.86543 1.20771 0.73322 0.80940 0.85194 1.93180 1.45427 1.81177 1.96757 1.93164 1.95730 1.76825 1.51131 1.93157 1.57855 1.69246 1.96352 1.21553 0.94891 0.98854 0.99811 1.21673 1.02786 0.97864 0.93161 0.92785 0.92400 0.93776 0.93652 0.93543 0.94868 0.97548 0.93336 0.84623 0.90649 0.90334 0.91030 0.90455 0.90826 0.90682 0.90384 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.16 37.16 0.34 -2.00 16 2 C 0.08 1.34 2.40 -67.71 -0.16 1.18 16 3 H 0.07 1.21 7.19 -51.93 -0.37 0.84 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.11 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 N -0.67 -9.88 5.51 -99.74 -0.55 -10.43 16 15 C 0.09 1.07 2.28 -67.71 -0.15 0.92 16 16 H 0.04 0.48 7.04 -51.93 -0.37 0.12 16 17 C -0.10 -1.37 5.42 -26.73 -0.14 -1.52 16 18 C -0.12 -1.26 4.96 -26.73 -0.13 -1.39 16 19 C -0.13 -1.26 2.16 -90.62 -0.20 -1.45 16 20 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 21 C 0.45 4.69 2.69 37.15 0.10 4.79 16 22 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 23 F -0.19 -1.99 16.80 2.25 0.04 -1.96 16 24 F -0.18 -2.02 16.28 2.25 0.04 -1.98 16 25 C -0.11 -1.00 4.96 -26.73 -0.13 -1.13 16 26 C -0.12 -1.15 5.19 -26.73 -0.14 -1.29 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.51 7.33 -51.93 -0.38 0.13 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.34 4.50 8.10 -39.29 -0.32 4.18 16 36 H 0.07 1.15 7.49 -51.93 -0.39 0.76 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.74 7.80 -51.93 -0.41 0.33 16 39 H 0.08 0.83 7.80 -51.93 -0.41 0.43 16 40 H 0.07 0.64 7.80 -51.93 -0.41 0.24 16 41 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -30.04 348.42 -7.96 -38.01 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.19 Total: -0.42 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.30 Total: -16.95 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.19 Total: -36.79 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.04 -7.96 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.726 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds