Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.52998 * 109.47437 * 120.00232 * 2 1 3 5 5 C 1.52997 * 109.47325 * 185.00137 * 4 2 1 6 6 C 1.50703 * 109.47030 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00183 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99780 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00067 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99827 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47242 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47368 * 120.00152 * 10 8 6 13 13 H 1.48509 * 109.47099 * 240.00164 * 10 8 6 14 14 N 1.46903 * 109.47003 * 240.00393 * 2 1 3 15 15 C 1.46898 * 111.00274 * 84.15102 * 14 2 1 16 16 H 1.08994 * 109.47438 * 325.98073 * 15 14 2 17 17 C 1.53003 * 109.46657 * 85.98344 * 15 14 2 18 18 C 1.53005 * 109.46718 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47116 * 299.99337 * 18 17 15 20 20 H 1.08994 * 109.47143 * 300.00534 * 19 18 17 21 21 C 1.52992 * 109.47129 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47219 * 60.00096 * 21 19 18 23 23 F 1.39902 * 109.47360 * 180.02562 * 21 19 18 24 24 F 1.39905 * 109.47386 * 300.00360 * 21 19 18 25 25 C 1.53004 * 109.46611 * 60.00175 * 19 18 17 26 26 C 1.52992 * 109.47379 * 299.99853 * 25 19 18 27 27 H 1.09001 * 109.47206 * 184.81381 * 1 2 3 28 28 H 1.08993 * 109.47176 * 304.81485 * 1 2 3 29 29 H 1.09004 * 109.47385 * 64.81833 * 1 2 3 30 30 H 1.09003 * 109.46776 * 304.99747 * 4 2 1 31 31 H 1.09003 * 109.46923 * 64.99729 * 4 2 1 32 32 H 1.09003 * 109.46875 * 299.99550 * 5 4 2 33 33 H 1.09000 * 109.47129 * 59.99498 * 5 4 2 34 34 H 0.96996 * 119.99601 * 180.02562 * 9 8 6 35 35 H 1.00904 * 110.99695 * 320.19656 * 14 2 1 36 36 H 1.09006 * 109.47071 * 299.99738 * 17 15 14 37 37 H 1.09003 * 109.47545 * 60.00019 * 17 15 14 38 38 H 1.08991 * 109.47311 * 60.00066 * 18 17 15 39 39 H 1.09005 * 109.46938 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47201 * 60.00016 * 25 19 18 41 41 H 1.09003 * 109.46589 * 179.97438 * 25 19 18 42 42 H 1.08994 * 109.47396 * 300.00266 * 26 25 19 43 43 H 1.08999 * 109.47498 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 1 3.3688 -1.8047 3.2129 8 6 5.4186 -1.3614 2.8149 9 7 6.2691 -0.7759 2.0003 10 14 6.0413 -2.2421 4.3400 11 1 4.8912 -2.8125 5.0865 12 1 6.9628 -3.3352 3.9389 13 1 6.7648 -1.2781 5.2076 14 7 2.0196 -0.6924 -1.1995 15 6 2.0633 0.2176 -2.3518 16 1 1.2406 0.9293 -2.2842 17 6 3.3933 0.9741 -2.3539 18 6 3.4386 1.9225 -3.5537 19 6 3.3090 1.1153 -4.8470 20 1 4.1318 0.4036 -4.9151 21 6 3.3550 2.0635 -6.0468 22 9 4.5712 2.7549 -6.0485 23 9 3.2360 1.3255 -7.2294 24 9 2.2992 2.9774 -5.9597 25 6 1.9792 0.3587 -4.8448 26 6 1.9338 -0.5896 -3.6451 27 1 -0.3634 -1.0240 0.0862 28 1 -0.3633 0.5867 0.8437 29 1 -0.3634 0.4373 -0.9300 30 1 1.6054 -0.2617 2.1369 31 1 1.7516 -1.7716 1.2055 32 1 3.9994 -1.0728 0.4259 33 1 3.8532 0.4370 1.3572 34 1 7.2197 -0.8024 2.1910 35 1 1.4578 -1.5057 -1.4022 36 1 3.4854 1.5496 -1.4327 37 1 4.2161 0.2624 -2.4216 38 1 2.6159 2.6342 -3.4856 39 1 4.3862 2.4611 -3.5555 40 1 1.1563 1.0704 -4.7767 41 1 1.8867 -0.2160 -5.7664 42 1 2.7566 -1.3012 -3.7132 43 1 0.9862 -1.1282 -3.6433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = -212.173703 kcal Electronic energy + Delta-G solvation = -24562.553361 eV Core-core repulsion = 20611.028639 eV Total energy + Delta-G solvation = -3951.524722 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.09720 -48.58562 -48.55964 -40.15416 -37.72749 -35.23909 -33.44787 -31.83486 -31.25652 -29.27263 -26.98368 -25.79565 -23.95833 -23.22387 -22.35512 -21.18228 -20.87932 -19.27209 -19.21944 -18.50928 -18.33348 -16.93522 -16.48450 -16.12828 -15.74690 -15.58677 -15.35146 -15.05321 -14.88723 -14.73662 -14.73007 -14.65003 -14.58271 -14.39363 -14.06857 -13.84004 -13.31000 -13.23259 -13.13014 -13.04648 -12.85717 -12.57642 -12.41490 -12.27934 -12.10831 -11.93001 -11.65322 -11.51631 -11.39312 -11.18377 -11.06314 -10.88486 -10.46458 -9.05864 -8.11991 -6.21824 1.40683 1.40867 1.53843 1.79018 2.44909 2.78944 3.01160 3.07764 3.20439 3.31298 3.70674 3.72444 4.08737 4.15311 4.17580 4.22375 4.33884 4.40122 4.42421 4.48097 4.52313 4.73951 4.77935 4.81133 4.95838 5.00919 5.04518 5.08614 5.15389 5.17866 5.21442 5.31580 5.36644 5.44811 5.53879 5.62434 5.93711 6.07048 6.37058 6.38796 6.75087 6.98590 7.46205 8.99207 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.003408 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.008595 B = 8214.206761 C = 9104.342024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.688 5.688 15 C 0.091 3.909 16 H 0.050 0.950 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.127 4.127 20 H 0.120 0.880 21 C 0.455 3.545 22 F -0.192 7.192 23 F -0.186 7.186 24 F -0.186 7.186 25 C -0.107 4.107 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.007 0.993 33 H -0.025 1.025 34 H 0.260 0.740 35 H 0.345 0.655 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 4.041 -17.214 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.075 0.925 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.320 5.320 15 C -0.019 4.019 16 H 0.068 0.932 17 C -0.139 4.139 18 C -0.148 4.148 19 C -0.147 4.147 20 H 0.138 0.862 21 C 0.402 3.598 22 F -0.173 7.173 23 F -0.168 7.168 24 F -0.168 7.168 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.069 0.931 35 H 0.165 0.835 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.593 4.178 -17.101 20.545 hybrid contribution 0.076 0.060 0.538 0.546 sum -10.517 4.237 -16.563 20.072 Atomic orbital electron populations 1.22393 0.95586 1.02517 1.02273 1.21501 0.93092 0.96830 0.90353 0.92515 1.21458 0.96597 0.99034 0.95585 1.18798 0.92118 0.93663 0.94991 1.21861 0.92438 1.34205 1.09499 0.92850 1.25909 0.97435 0.96519 0.99841 1.70122 1.02483 1.45674 1.38929 0.85508 0.78397 0.78340 0.79440 1.18746 1.20460 1.20562 1.60380 1.58923 1.09434 1.03227 1.21523 0.96132 0.94151 0.90045 0.93187 1.21403 0.98333 0.97629 0.96530 1.21532 1.03487 0.97747 0.92005 1.22539 1.04164 0.96982 0.90977 0.86162 1.20778 0.72967 0.80808 0.85293 1.93168 1.45965 1.81387 1.96795 1.93165 1.95702 1.76770 1.51138 1.93155 1.57876 1.69375 1.96363 1.21547 0.94305 0.98777 0.99906 1.21604 1.03493 0.97608 0.91977 0.91913 0.92097 0.91742 0.93676 0.93414 0.97472 1.00706 0.93111 0.83543 0.93668 0.92756 0.90183 0.90882 0.90056 0.89078 0.91205 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.16 71.98 0.66 -3.33 16 2 C 0.09 2.92 2.40 44.91 0.11 3.03 16 3 H 0.06 1.96 7.19 -2.39 -0.02 1.95 16 4 C -0.09 -3.62 4.83 30.59 0.15 -3.47 16 5 C 0.04 2.22 4.86 29.85 0.15 2.36 16 6 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 7 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 8 C 0.00 0.01 5.46 84.65 0.46 0.48 16 9 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 N -0.69 -20.19 5.51 -469.46 -2.59 -22.78 16 15 C 0.09 2.16 2.28 44.92 0.10 2.26 16 16 H 0.05 1.11 7.04 -2.39 -0.02 1.09 16 17 C -0.10 -2.77 5.42 30.60 0.17 -2.61 16 18 C -0.11 -2.33 4.96 30.60 0.15 -2.18 16 19 C -0.13 -2.28 2.16 -10.79 -0.02 -2.31 16 20 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 21 C 0.46 8.79 2.69 71.98 0.19 8.98 16 22 F -0.19 -4.22 16.80 44.97 0.76 -3.46 16 23 F -0.19 -3.63 16.80 44.97 0.76 -2.87 16 24 F -0.19 -3.73 16.28 44.97 0.73 -3.00 16 25 C -0.11 -1.63 4.96 30.59 0.15 -1.48 16 26 C -0.11 -1.93 5.19 30.59 0.16 -1.77 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.29 7.33 -2.38 -0.02 1.27 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 33 H -0.03 -1.50 8.14 -2.39 -0.02 -1.52 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.34 8.80 8.10 -89.69 -0.73 8.07 16 36 H 0.04 1.49 7.49 -2.38 -0.02 1.47 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.58 7.80 -2.39 -0.02 1.56 16 39 H 0.07 1.60 7.80 -2.38 -0.02 1.59 16 40 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16 41 H 0.09 1.16 7.80 -2.39 -0.02 1.14 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.24 8.12 -2.39 -0.02 1.23 16 Total: -1.00 -65.87 348.42 4.89 -60.98 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.26 Total: 12.90 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 2.66 Total: -31.43 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -2.30 Total: -80.38 kcal Atomic # 9 Polarization: -11.58 SS G_CDS: 2.24 Total: -9.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.87 4.89 -60.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.190 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds