Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99875 * 2 1 4 4 H 1.48495 * 109.47094 * 85.09366 * 3 2 1 5 5 H 1.48506 * 109.46871 * 205.09468 * 3 2 1 6 6 H 1.48501 * 109.46836 * 325.09197 * 3 2 1 7 7 C 1.37875 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00298 * 172.41530 * 7 2 1 9 9 C 1.50700 * 119.99997 * 352.41775 * 7 2 1 10 10 C 1.53006 * 109.47151 * 296.29308 * 9 7 2 11 11 C 1.53008 * 109.46657 * 299.99965 * 10 9 7 12 12 C 1.53005 * 109.46921 * 299.99900 * 11 10 9 13 13 N 1.46901 * 109.46670 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99817 * 85.00510 * 13 12 11 15 15 C 1.52996 * 109.47083 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47410 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47252 * 179.97438 * 16 15 14 18 18 H 1.09001 * 110.54601 * 305.69805 * 17 16 15 19 19 C 1.51443 * 110.60791 * 68.55591 * 17 16 15 20 20 N 1.27563 * 107.16760 * 118.51389 * 19 17 16 21 21 N 1.39149 * 113.16963 * 359.97438 * 20 19 17 22 22 C 1.35320 * 111.15980 * 0.09293 * 21 20 19 23 23 O 1.21295 * 127.67870 * 179.91039 * 22 21 20 24 24 C 1.53000 * 109.47079 * 60.00445 * 12 11 10 25 25 C 1.52996 * 109.47406 * 176.29305 * 9 7 2 26 26 H 0.96999 * 119.99591 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47427 * 56.28574 * 9 7 2 28 28 H 1.08998 * 109.47191 * 59.99434 * 10 9 7 29 29 H 1.08995 * 109.47257 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.46868 * 180.02562 * 11 10 9 31 31 H 1.08995 * 109.47144 * 60.00106 * 11 10 9 32 32 H 1.08995 * 109.46857 * 299.99993 * 12 11 10 33 33 H 1.00901 * 111.00386 * 321.04692 * 13 12 11 34 34 H 1.09007 * 109.46914 * 299.99062 * 14 13 12 35 35 H 1.08996 * 109.47396 * 59.99589 * 14 13 12 36 36 H 1.09007 * 109.47174 * 299.99720 * 15 14 13 37 37 H 1.09005 * 109.47294 * 59.99347 * 15 14 13 38 38 H 1.08997 * 109.47466 * 299.99803 * 16 15 14 39 39 H 1.09005 * 109.47102 * 59.99625 * 16 15 14 40 40 H 1.07993 * 126.41260 * 298.47649 * 19 17 16 41 41 H 0.96998 * 124.44775 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.46897 * 180.02562 * 24 12 11 43 43 H 1.08995 * 109.47328 * 59.99585 * 24 12 11 44 44 H 1.08996 * 109.47403 * 180.02562 * 25 9 7 45 45 H 1.09008 * 109.46839 * 299.99877 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3930 2.1063 1.3949 5 1 3.5948 1.4125 -0.5938 6 1 1.5023 2.6205 -0.8012 7 6 2.0046 -1.1940 0.0005 8 1 3.0775 -1.1982 -0.1229 9 6 1.2610 -2.4934 0.1733 10 6 0.6061 -2.5263 1.5558 11 6 1.6853 -2.4089 2.6341 12 6 2.6641 -3.5778 2.5054 13 7 3.6998 -3.4654 3.5411 14 6 3.2485 -4.0646 4.8041 15 6 4.3515 -3.9291 5.8557 16 6 3.8813 -4.5527 7.1713 17 6 4.9846 -4.4177 8.2227 18 1 5.9194 -4.8388 7.8526 19 6 5.1719 -2.9672 8.6156 20 7 4.9128 -2.8781 9.8615 21 7 4.5551 -4.0945 10.4347 22 6 4.5715 -5.0900 9.5182 23 8 4.3128 -6.2622 9.6921 24 6 3.3189 -3.5448 1.1230 25 6 2.2398 -3.6622 0.0447 26 1 -0.4849 0.8401 0.0004 27 1 0.4921 -2.5770 -0.5949 28 1 -0.0911 -1.6936 1.6474 29 1 0.0687 -3.4662 1.6809 30 1 1.2189 -2.4328 3.6189 31 1 2.2231 -1.4691 2.5091 32 1 2.1262 -4.5175 2.6304 33 1 3.9746 -2.5037 3.6749 34 1 2.3514 -3.5509 5.1498 35 1 3.0251 -5.1197 4.6463 36 1 5.2485 -4.4430 5.5098 37 1 4.5754 -2.8741 6.0136 38 1 2.9846 -4.0385 7.5171 39 1 3.6571 -5.6077 7.0137 40 1 5.4698 -2.1597 7.9633 41 1 4.3256 -4.2142 11.3695 42 1 4.0159 -4.3778 1.0311 43 1 3.8567 -2.6051 0.9980 44 1 1.7019 -4.6020 0.1692 45 1 2.7063 -3.6388 -0.9402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = -11.601343 kcal Electronic energy + Delta-G solvation = -23328.751590 eV Core-core repulsion = 19960.073830 eV Total energy + Delta-G solvation = -3368.677760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66686 -38.34678 -37.83773 -36.09528 -34.00273 -32.15310 -31.36015 -29.73989 -29.53082 -27.41178 -24.91278 -23.90896 -22.45035 -21.53712 -21.17027 -21.11832 -20.51927 -18.72392 -18.21172 -16.52189 -16.04557 -15.74082 -15.35134 -15.12404 -14.91647 -14.61862 -14.42483 -14.37806 -13.57000 -13.26006 -13.14281 -12.76722 -12.66931 -12.47688 -12.31124 -11.76124 -11.56901 -11.45544 -11.31504 -11.04511 -10.95659 -10.83228 -10.78216 -10.54426 -10.35141 -10.15005 -10.08028 -9.70817 -9.53223 -9.16534 -8.96882 -8.68045 -8.28760 -7.86730 -5.98397 -3.98694 1.15900 2.18153 2.28843 3.28893 3.37514 3.39972 3.43144 3.77972 4.26735 4.40303 4.45326 4.64599 4.84022 5.03066 5.22989 5.26319 5.34362 5.41932 5.53974 5.58139 5.59752 5.75352 5.81831 6.00127 6.09091 6.11118 6.20520 6.33499 6.42631 6.47406 6.52608 6.72060 6.76613 6.89801 7.08246 7.10520 7.16963 7.28345 7.46395 7.49506 7.56300 7.74681 7.79196 7.95109 8.08113 8.50766 9.04551 9.63510 11.10605 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002847 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.425174 B = 9833.844939 C =10526.080731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.289 1.289 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.099 4.099 11 C -0.128 4.128 12 C 0.094 3.906 13 N -0.689 5.689 14 C 0.058 3.942 15 C -0.116 4.116 16 C -0.090 4.090 17 C -0.148 4.148 18 H 0.139 0.861 19 C 0.086 3.914 20 N -0.237 5.237 21 N -0.580 5.580 22 C 0.502 3.498 23 O -0.496 6.496 24 C -0.092 4.092 25 C -0.108 4.108 26 H 0.258 0.742 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.339 0.661 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.214 0.786 41 H 0.433 0.567 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -6.414 15.932 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.138 4.138 11 C -0.167 4.167 12 C -0.015 4.015 13 N -0.318 5.318 14 C -0.072 4.072 15 C -0.153 4.153 16 C -0.129 4.129 17 C -0.172 4.172 18 H 0.157 0.843 19 C -0.128 4.128 20 N -0.042 5.042 21 N -0.329 5.329 22 C 0.287 3.713 23 O -0.367 6.367 24 C -0.130 4.130 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.278 0.722 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.498 -6.989 16.646 20.400 hybrid contribution -0.355 1.157 0.298 1.247 sum 9.143 -5.832 16.944 20.117 Atomic orbital electron populations 1.69953 1.05891 1.26205 1.50993 1.24954 0.94691 0.98815 0.95518 0.86752 0.80158 0.84292 0.77867 1.20899 1.19892 1.21472 1.21157 0.93507 0.90625 1.48560 0.92559 1.18699 0.93657 0.92299 0.93022 1.21386 0.96992 0.98876 0.96529 1.22040 0.98276 0.99102 0.97255 1.21572 0.90546 0.97875 0.91535 1.60699 1.40833 1.23562 1.06713 1.21911 0.95593 0.99989 0.89700 1.21598 0.99709 1.01203 0.92836 1.21287 0.95508 1.03200 0.92922 1.21967 1.03995 0.94967 0.96267 0.84313 1.27152 0.95677 0.97482 0.92480 1.74753 1.11296 1.05886 1.12264 1.47750 1.67243 1.04770 1.13094 1.21475 0.76386 0.86003 0.87389 1.90822 1.48172 1.14491 1.83241 1.21346 0.97521 1.01193 0.92922 1.21562 0.97426 0.98389 0.97207 0.93235 0.95382 0.90730 0.96547 0.95353 0.90939 0.92107 0.84373 0.95347 0.91383 0.90490 0.91535 0.91236 0.89951 0.77014 0.72183 0.93951 0.91282 0.94982 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.95 55.43 0.66 -24.41 16 2 C 0.06 1.63 5.22 -17.82 -0.09 1.54 16 3 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.50 -12.95 6.63 -34.44 -0.23 -13.18 16 8 H 0.06 1.45 6.59 -52.49 -0.35 1.11 16 9 C 0.04 1.00 2.47 -91.77 -0.23 0.77 16 10 C -0.10 -2.23 5.28 -26.72 -0.14 -2.37 16 11 C -0.13 -2.47 4.95 -26.72 -0.13 -2.60 16 12 C 0.09 1.58 2.47 -67.71 -0.17 1.42 16 13 N -0.69 -9.52 6.25 -106.72 -0.67 -10.19 16 14 C 0.06 0.65 5.48 -3.83 -0.02 0.63 16 15 C -0.12 -0.91 5.33 -26.73 -0.14 -1.05 16 16 C -0.09 -0.68 4.74 -26.73 -0.13 -0.81 16 17 C -0.15 -1.03 3.04 -92.08 -0.28 -1.31 16 18 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.09 0.50 11.15 -13.69 -0.15 0.35 16 20 N -0.24 -1.89 12.21 32.60 0.40 -1.49 16 21 N -0.58 -4.85 7.14 31.58 0.23 -4.63 16 22 C 0.50 4.97 8.28 -10.26 -0.08 4.89 16 23 O -0.50 -6.68 18.03 5.54 0.10 -6.58 16 24 C -0.09 -1.68 5.30 -26.73 -0.14 -1.82 16 25 C -0.11 -2.18 5.42 -26.73 -0.14 -2.33 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.07 1.90 6.68 -51.93 -0.35 1.55 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 31 H 0.07 1.54 7.20 -51.93 -0.37 1.17 16 32 H 0.06 1.04 7.80 -51.93 -0.40 0.63 16 33 H 0.34 4.57 8.47 -39.29 -0.33 4.24 16 34 H 0.03 0.34 7.44 -51.92 -0.39 -0.04 16 35 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.44 7.33 -51.93 -0.38 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.21 0.53 7.73 -52.49 -0.41 0.13 16 41 H 0.43 2.85 8.96 -183.31 -1.64 1.20 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.37 6.55 -51.93 -0.34 1.03 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -30.57 354.05 -9.76 -40.32 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.70 Total: 1.89 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.08 Total: -15.87 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.62 Total: -40.72 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.10 Total: -6.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.57 -9.76 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.722 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds