Wall clock time and date at job start Tue Mar 31 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99875 * 2 1 4 4 H 1.48495 * 109.47094 * 85.09366 * 3 2 1 5 5 H 1.48506 * 109.46871 * 205.09468 * 3 2 1 6 6 H 1.48501 * 109.46836 * 325.09197 * 3 2 1 7 7 C 1.37875 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00298 * 172.41530 * 7 2 1 9 9 C 1.50700 * 119.99997 * 352.41775 * 7 2 1 10 10 C 1.53006 * 109.47151 * 296.29308 * 9 7 2 11 11 C 1.53008 * 109.46657 * 299.99965 * 10 9 7 12 12 C 1.53005 * 109.46921 * 299.99900 * 11 10 9 13 13 N 1.46901 * 109.46670 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99817 * 85.00510 * 13 12 11 15 15 C 1.52996 * 109.47083 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47410 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47252 * 179.97438 * 16 15 14 18 18 H 1.09001 * 110.54601 * 305.69805 * 17 16 15 19 19 C 1.51443 * 110.60791 * 68.55591 * 17 16 15 20 20 N 1.27563 * 107.16760 * 118.51389 * 19 17 16 21 21 N 1.39149 * 113.16963 * 359.97438 * 20 19 17 22 22 C 1.35320 * 111.15980 * 0.09293 * 21 20 19 23 23 O 1.21295 * 127.67870 * 179.91039 * 22 21 20 24 24 C 1.53000 * 109.47079 * 60.00445 * 12 11 10 25 25 C 1.52996 * 109.47406 * 176.29305 * 9 7 2 26 26 H 0.96999 * 119.99591 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47427 * 56.28574 * 9 7 2 28 28 H 1.08998 * 109.47191 * 59.99434 * 10 9 7 29 29 H 1.08995 * 109.47257 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.46868 * 180.02562 * 11 10 9 31 31 H 1.08995 * 109.47144 * 60.00106 * 11 10 9 32 32 H 1.08995 * 109.46857 * 299.99993 * 12 11 10 33 33 H 1.00901 * 111.00386 * 321.04692 * 13 12 11 34 34 H 1.09007 * 109.46914 * 299.99062 * 14 13 12 35 35 H 1.08996 * 109.47396 * 59.99589 * 14 13 12 36 36 H 1.09007 * 109.47174 * 299.99720 * 15 14 13 37 37 H 1.09005 * 109.47294 * 59.99347 * 15 14 13 38 38 H 1.08997 * 109.47466 * 299.99803 * 16 15 14 39 39 H 1.09005 * 109.47102 * 59.99625 * 16 15 14 40 40 H 1.07993 * 126.41260 * 298.47649 * 19 17 16 41 41 H 0.96998 * 124.44775 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.46897 * 180.02562 * 24 12 11 43 43 H 1.08995 * 109.47328 * 59.99585 * 24 12 11 44 44 H 1.08996 * 109.47403 * 180.02562 * 25 9 7 45 45 H 1.09008 * 109.46839 * 299.99877 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3930 2.1063 1.3949 5 1 3.5948 1.4125 -0.5938 6 1 1.5023 2.6205 -0.8012 7 6 2.0046 -1.1940 0.0005 8 1 3.0775 -1.1982 -0.1229 9 6 1.2610 -2.4934 0.1733 10 6 0.6061 -2.5263 1.5558 11 6 1.6853 -2.4089 2.6341 12 6 2.6641 -3.5778 2.5054 13 7 3.6998 -3.4654 3.5411 14 6 3.2485 -4.0646 4.8041 15 6 4.3515 -3.9291 5.8557 16 6 3.8813 -4.5527 7.1713 17 6 4.9846 -4.4177 8.2227 18 1 5.9194 -4.8388 7.8526 19 6 5.1719 -2.9672 8.6156 20 7 4.9128 -2.8781 9.8615 21 7 4.5551 -4.0945 10.4347 22 6 4.5715 -5.0900 9.5182 23 8 4.3128 -6.2622 9.6921 24 6 3.3189 -3.5448 1.1230 25 6 2.2398 -3.6622 0.0447 26 1 -0.4849 0.8401 0.0004 27 1 0.4921 -2.5770 -0.5949 28 1 -0.0911 -1.6936 1.6474 29 1 0.0687 -3.4662 1.6809 30 1 1.2189 -2.4328 3.6189 31 1 2.2231 -1.4691 2.5091 32 1 2.1262 -4.5175 2.6304 33 1 3.9746 -2.5037 3.6749 34 1 2.3514 -3.5509 5.1498 35 1 3.0251 -5.1197 4.6463 36 1 5.2485 -4.4430 5.5098 37 1 4.5754 -2.8741 6.0136 38 1 2.9846 -4.0385 7.5171 39 1 3.6571 -5.6077 7.0137 40 1 5.4698 -2.1597 7.9633 41 1 4.3256 -4.2142 11.3695 42 1 4.0159 -4.3778 1.0311 43 1 3.8567 -2.6051 0.9980 44 1 1.7019 -4.6020 0.1692 45 1 2.7063 -3.6388 -0.9402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:04 Heat of formation + Delta-G solvation = -32.468024 kcal Electronic energy + Delta-G solvation = -23329.656437 eV Core-core repulsion = 19960.073830 eV Total energy + Delta-G solvation = -3369.582607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29365 -39.82776 -38.60988 -37.13394 -35.17618 -33.81227 -32.12606 -31.23338 -30.76411 -28.64886 -26.64404 -24.93390 -23.22036 -22.98534 -22.18794 -21.89897 -21.62588 -20.45490 -18.87931 -17.79253 -17.18503 -16.79354 -16.55374 -16.27720 -15.92555 -15.82156 -15.53725 -15.10921 -14.90532 -14.79650 -14.48077 -13.91156 -13.72752 -13.60007 -13.29650 -13.09218 -12.95863 -12.81857 -12.62838 -12.59708 -12.35152 -12.15244 -12.04591 -11.82042 -11.69272 -11.52840 -11.38334 -10.91658 -10.80711 -10.65704 -10.54412 -10.28707 -10.17785 -9.09833 -8.03608 -6.09490 0.59603 1.43040 1.45812 1.54681 1.54747 1.70655 2.49048 2.83643 3.25979 3.27813 3.35555 3.79816 3.99756 4.08665 4.21184 4.25882 4.42158 4.47107 4.57454 4.61670 4.69197 4.76046 4.79876 4.90154 4.91615 4.96025 5.00720 5.02968 5.08432 5.17700 5.30289 5.38315 5.41673 5.49383 5.59923 5.62215 5.65113 5.69485 5.76140 5.98645 6.17187 6.31086 6.49131 6.50024 6.67425 6.85096 7.01743 7.55918 9.05102 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002847 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.425174 B = 9833.844939 C =10526.080731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.293 1.293 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.095 4.095 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.682 5.682 14 C 0.055 3.945 15 C -0.104 4.104 16 C -0.081 4.081 17 C -0.142 4.142 18 H 0.161 0.839 19 C 0.110 3.890 20 N -0.265 5.265 21 N -0.580 5.580 22 C 0.491 3.509 23 O -0.543 6.543 24 C -0.084 4.084 25 C -0.104 4.104 26 H 0.256 0.744 27 H -0.014 1.014 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.343 0.657 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.251 0.749 41 H 0.437 0.563 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.840 -6.052 16.702 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.220 1.220 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.134 4.134 11 C -0.156 4.156 12 C -0.005 4.005 13 N -0.311 5.311 14 C -0.075 4.075 15 C -0.141 4.141 16 C -0.120 4.120 17 C -0.166 4.166 18 H 0.178 0.822 19 C -0.103 4.103 20 N -0.070 5.070 21 N -0.326 5.326 22 C 0.278 3.722 23 O -0.419 6.419 24 C -0.122 4.122 25 C -0.142 4.142 26 H 0.065 0.935 27 H 0.004 0.996 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.267 0.733 41 H 0.282 0.718 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.833 -6.602 17.435 22.081 hybrid contribution -1.113 1.037 0.010 1.521 sum 10.720 -5.565 17.445 21.219 Atomic orbital electron populations 1.70100 1.07382 1.26703 1.52419 1.25675 0.95339 1.02078 0.95558 0.85790 0.79078 0.80299 0.78032 1.20068 1.18986 1.21992 1.21416 0.93555 0.91481 1.47493 0.92451 1.18701 0.93452 0.93472 0.92623 1.21258 0.97387 0.97832 0.96939 1.21910 0.97656 0.99422 0.96566 1.21349 0.90531 0.96644 0.92002 1.60657 1.39236 1.24004 1.07237 1.22011 0.96680 0.99391 0.89383 1.21502 0.98540 1.02684 0.91421 1.21148 0.95443 1.02455 0.93000 1.21984 1.04501 0.95620 0.94502 0.82201 1.27827 0.93073 0.97443 0.91968 1.74827 1.13377 1.05338 1.13462 1.47844 1.66571 1.04851 1.13384 1.21968 0.75777 0.85617 0.88798 1.90789 1.50532 1.16367 1.84183 1.21255 0.96885 1.01191 0.92916 1.21479 0.97320 0.97261 0.98111 0.93533 0.99588 0.94382 0.95523 0.94014 0.92942 0.91688 0.83864 0.96072 0.91758 0.89596 0.89433 0.91923 0.91088 0.73286 0.71778 0.91851 0.92781 0.93537 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.44 11.95 21.45 0.26 -53.18 16 2 C 0.01 0.59 5.22 84.65 0.44 1.03 16 3 Si 0.94 42.35 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 7 C -0.50 -26.10 6.63 25.60 0.17 -25.93 16 8 H 0.06 2.93 6.59 -2.91 -0.02 2.91 16 9 C 0.04 1.75 2.47 -11.54 -0.03 1.72 16 10 C -0.10 -4.33 5.28 30.60 0.16 -4.17 16 11 C -0.12 -4.37 4.95 30.60 0.15 -4.22 16 12 C 0.10 3.28 2.47 44.92 0.11 3.39 16 13 N -0.68 -16.63 6.25 -491.56 -3.07 -19.70 16 14 C 0.05 1.07 5.48 86.30 0.47 1.54 16 15 C -0.10 -1.22 5.33 30.59 0.16 -1.06 16 16 C -0.08 -1.02 4.74 30.59 0.15 -0.87 16 17 C -0.14 -1.58 3.04 -11.74 -0.04 -1.62 16 18 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 19 C 0.11 0.88 11.15 88.96 0.99 1.87 16 20 N -0.27 -3.64 12.21 -50.09 -0.61 -4.25 16 21 N -0.58 -9.15 7.14 -172.08 -1.23 -10.38 16 22 C 0.49 9.33 8.28 87.88 0.73 10.06 16 23 O -0.54 -14.81 18.03 -3.08 -0.06 -14.87 16 24 C -0.08 -2.90 5.30 30.59 0.16 -2.74 16 25 C -0.10 -4.10 5.42 30.59 0.17 -3.93 16 26 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 27 H -0.01 -0.79 8.13 -2.38 -0.02 -0.81 16 28 H 0.04 1.99 6.68 -2.39 -0.02 1.97 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.44 7.45 -2.39 -0.02 1.42 16 31 H 0.05 2.18 7.20 -2.39 -0.02 2.16 16 32 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 33 H 0.34 8.08 8.47 -89.69 -0.76 7.32 16 34 H 0.02 0.45 7.44 -2.38 -0.02 0.43 16 35 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 36 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 0.71 7.33 -2.38 -0.02 0.69 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.25 -0.10 7.73 -2.91 -0.02 -0.12 16 41 H 0.44 5.66 8.96 -213.93 -1.92 3.74 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 2.03 6.55 -2.39 -0.02 2.01 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -68.12 354.05 -0.57 -68.69 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -1.68 Total: 14.24 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.80 Total: -24.93 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -4.66 Total: -87.50 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.06 Total: -14.87 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -68.12 -0.57 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.221 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds