Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47311 * 240.00182 * 3 2 1 5 5 H 1.48497 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47157 * 120.00297 * 3 2 1 7 7 C 1.37874 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46815 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47011 * 299.99810 * 11 10 9 13 13 N 1.46903 * 109.47210 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00195 * 154.99594 * 13 12 11 15 15 C 1.53001 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 H 1.09002 * 110.54642 * 54.29825 * 17 16 15 19 19 C 1.51441 * 110.61063 * 291.45077 * 17 16 15 20 20 N 1.27919 * 106.98152 * 241.54376 * 19 17 16 21 21 N 1.39142 * 113.21087 * 359.84943 * 20 19 17 22 22 C 1.34948 * 111.12581 * 0.10086 * 21 20 19 23 23 O 1.21299 * 127.50533 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.47176 * 60.00411 * 12 11 10 25 25 C 1.52998 * 109.47147 * 300.00488 * 9 7 2 26 26 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47038 * 60.00995 * 9 7 2 28 28 H 1.08994 * 109.47388 * 60.00297 * 10 9 7 29 29 H 1.09001 * 109.47091 * 300.00149 * 10 9 7 30 30 H 1.08998 * 109.46856 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.47079 * 59.99889 * 11 10 9 32 32 H 1.08994 * 109.47263 * 299.99965 * 12 11 10 33 33 H 1.00905 * 110.99443 * 31.04692 * 13 12 11 34 34 H 1.09001 * 109.46391 * 60.00431 * 14 13 12 35 35 H 1.09002 * 109.47472 * 300.00702 * 14 13 12 36 36 H 1.09001 * 109.46652 * 60.00605 * 15 14 13 37 37 H 1.08992 * 109.47514 * 300.00694 * 15 14 13 38 38 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 39 39 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 40 40 H 1.08008 * 126.41598 * 61.44100 * 19 17 16 41 41 H 0.97007 * 124.44013 * 180.12050 * 21 20 19 42 42 H 1.08998 * 109.46906 * 59.99557 * 24 12 11 43 43 H 1.09001 * 109.47091 * 179.97438 * 24 12 11 44 44 H 1.08994 * 109.47263 * 299.99778 * 25 9 7 45 45 H 1.08998 * 109.47068 * 60.00240 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 0.6002 -5.0685 1.2478 13 7 -0.1348 -6.3404 1.2469 14 6 -0.5020 -6.7372 2.6127 15 6 -1.2647 -8.0629 2.5710 16 6 -1.6477 -8.4758 3.9936 17 6 -2.4099 -9.8018 3.9520 18 1 -1.8324 -10.5585 3.4210 19 6 -3.7670 -9.6166 3.3059 20 7 -4.6443 -9.9212 4.1856 21 7 -4.0900 -10.3115 5.4007 22 6 -2.7418 -10.2711 5.3556 23 8 -1.9645 -10.5499 6.2441 24 6 -0.3941 -3.9055 1.2478 25 6 0.3718 -2.5804 1.2489 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 2.8719 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 2.1885 -5.8156 -0.0007 31 1 0.8539 -5.0445 -0.8913 32 1 1.2266 -5.0110 2.1379 33 1 0.3982 -7.0656 0.7906 34 1 -1.1344 -5.9684 3.0567 35 1 0.4008 -6.8557 3.2119 36 1 -0.6326 -8.8318 2.1269 37 1 -2.1675 -7.9440 1.9721 38 1 -0.7451 -8.5946 4.5930 39 1 -2.2800 -7.7068 4.4374 40 1 -3.9561 -9.2878 2.2946 41 1 -4.6051 -10.5781 6.1783 42 1 -1.0204 -3.9631 0.3575 43 1 -1.0213 -3.9638 2.1373 44 1 0.9986 -2.5228 2.1387 45 1 -0.3366 -1.7519 1.2493 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -12.595416 kcal Electronic energy + Delta-G solvation = -22939.042256 eV Core-core repulsion = 19570.321390 eV Total energy + Delta-G solvation = -3368.720866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69535 -38.29564 -37.83701 -36.10696 -34.09237 -32.34042 -31.36840 -29.76416 -29.67643 -27.70998 -24.90490 -23.65636 -22.52560 -21.77655 -21.18012 -20.95863 -20.30604 -18.65905 -18.22739 -16.56758 -16.29521 -15.88340 -15.60974 -15.27492 -14.82160 -14.69809 -14.54531 -14.11276 -13.86296 -13.39252 -13.02853 -12.88210 -12.71553 -12.53442 -12.16151 -12.04145 -11.68132 -11.50482 -11.23540 -11.07815 -10.98620 -10.88533 -10.65412 -10.45039 -10.31578 -10.16759 -10.12047 -9.80768 -9.54420 -9.30592 -8.88305 -8.64383 -8.25777 -8.15019 -5.93891 -4.00069 1.12891 2.16554 2.27772 3.33607 3.38434 3.40230 3.40965 3.75472 4.18869 4.36605 4.46624 4.53259 4.82969 4.99395 5.12932 5.19598 5.33788 5.36986 5.45785 5.48765 5.53471 5.61359 5.70242 5.91467 5.99919 6.02456 6.17875 6.18824 6.35975 6.43866 6.45967 6.62929 6.73440 6.77907 6.97121 7.06082 7.17373 7.27679 7.41169 7.47995 7.59283 7.61917 7.80085 8.07507 8.21592 8.51970 9.04023 9.64244 11.11541 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032514 B = 0.002304 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.953709 B =12147.826433 C =12406.880071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.091 3.909 13 N -0.688 5.688 14 C 0.058 3.942 15 C -0.115 4.115 16 C -0.090 4.090 17 C -0.148 4.148 18 H 0.138 0.862 19 C 0.087 3.913 20 N -0.238 5.238 21 N -0.578 5.578 22 C 0.501 3.499 23 O -0.498 6.498 24 C -0.100 4.100 25 C -0.110 4.110 26 H 0.259 0.741 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.333 0.667 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.215 0.785 41 H 0.434 0.566 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.029 0.971 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -20.159 5.526 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.018 4.018 13 N -0.318 5.318 14 C -0.072 4.072 15 C -0.153 4.153 16 C -0.130 4.130 17 C -0.172 4.172 18 H 0.155 0.845 19 C -0.127 4.127 20 N -0.043 5.043 21 N -0.326 5.326 22 C 0.286 3.714 23 O -0.369 6.369 24 C -0.139 4.139 25 C -0.149 4.149 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.150 0.850 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.231 0.769 41 H 0.279 0.721 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.002 -19.997 6.170 22.405 hybrid contribution 1.838 0.522 0.708 2.037 sum -6.165 -19.474 6.877 21.553 Atomic orbital electron populations 1.69868 1.05807 1.26342 1.50896 1.24962 0.94834 0.98926 0.95279 0.86725 0.79652 0.83465 0.78527 1.20364 1.21356 1.20410 1.21209 0.92799 0.90880 1.50303 0.92956 1.18645 0.92575 0.91325 0.94381 1.21603 0.98618 0.94233 1.00018 1.21712 0.97646 0.98328 0.97609 1.21617 0.93939 0.89017 0.97205 1.60596 1.48819 1.05526 1.16886 1.21953 0.98347 0.96320 0.90545 1.21594 1.01441 0.97226 0.95037 1.21288 1.00032 0.92501 0.99158 1.21957 0.98079 1.02432 0.94708 0.84456 1.27268 0.90183 0.95574 0.99660 1.74882 1.26108 1.11084 0.92211 1.47650 1.06437 1.65688 1.12809 1.21390 0.83045 0.76774 0.90150 1.90825 1.53693 1.48554 1.43848 1.21600 0.97148 0.94788 1.00323 1.21634 0.99578 0.95122 0.98520 0.93062 0.95635 0.93635 0.93375 0.94032 0.91769 0.94619 0.84967 0.90881 0.95590 0.91596 0.90401 0.90135 0.90950 0.76869 0.72121 0.92301 0.94402 0.95189 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.34 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.17 5.14 -26.72 -0.14 -2.31 16 11 C -0.11 -1.92 5.19 -26.73 -0.14 -2.06 16 12 C 0.09 1.48 2.49 -67.71 -0.17 1.31 16 13 N -0.69 -8.83 6.31 -106.72 -0.67 -9.50 16 14 C 0.06 0.62 5.48 -3.83 -0.02 0.60 16 15 C -0.12 -0.82 5.33 -26.73 -0.14 -0.97 16 16 C -0.09 -0.65 4.74 -26.73 -0.13 -0.77 16 17 C -0.15 -0.95 3.04 -92.08 -0.28 -1.23 16 18 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 19 C 0.09 0.47 11.17 -13.54 -0.15 0.31 16 20 N -0.24 -1.81 12.22 32.83 0.40 -1.40 16 21 N -0.58 -4.63 7.13 31.51 0.22 -4.41 16 22 C 0.50 4.79 8.26 -10.43 -0.09 4.71 16 23 O -0.50 -6.57 18.03 5.54 0.10 -6.47 16 24 C -0.10 -1.92 5.43 -26.70 -0.14 -2.06 16 25 C -0.11 -2.55 4.98 -26.70 -0.13 -2.69 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.61 7.80 -51.93 -0.41 0.20 16 33 H 0.33 3.74 8.35 -39.29 -0.33 3.41 16 34 H 0.07 0.88 7.43 -51.93 -0.39 0.49 16 35 H 0.03 0.29 8.06 -51.93 -0.42 -0.13 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.51 7.33 -51.93 -0.38 0.13 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.21 0.44 7.73 -52.48 -0.41 0.03 16 41 H 0.43 2.72 8.96 -183.31 -1.64 1.08 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.68 7.45 -51.93 -0.39 0.29 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -31.51 357.88 -9.92 -41.43 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.86 Total: 0.33 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.11 Total: -16.90 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.58 Total: -40.02 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.10 Total: -6.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.51 -9.92 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.838 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds