Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47311 * 240.00182 * 3 2 1 5 5 H 1.48497 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47157 * 120.00297 * 3 2 1 7 7 C 1.37874 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46815 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47011 * 299.99810 * 11 10 9 13 13 N 1.46903 * 109.47210 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00195 * 154.99594 * 13 12 11 15 15 C 1.53001 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 H 1.09002 * 110.54642 * 54.29825 * 17 16 15 19 19 C 1.51441 * 110.61063 * 291.45077 * 17 16 15 20 20 N 1.27919 * 106.98152 * 241.54376 * 19 17 16 21 21 N 1.39142 * 113.21087 * 359.84943 * 20 19 17 22 22 C 1.34948 * 111.12581 * 0.10086 * 21 20 19 23 23 O 1.21299 * 127.50533 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.47176 * 60.00411 * 12 11 10 25 25 C 1.52998 * 109.47147 * 300.00488 * 9 7 2 26 26 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47038 * 60.00995 * 9 7 2 28 28 H 1.08994 * 109.47388 * 60.00297 * 10 9 7 29 29 H 1.09001 * 109.47091 * 300.00149 * 10 9 7 30 30 H 1.08998 * 109.46856 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.47079 * 59.99889 * 11 10 9 32 32 H 1.08994 * 109.47263 * 299.99965 * 12 11 10 33 33 H 1.00905 * 110.99443 * 31.04692 * 13 12 11 34 34 H 1.09001 * 109.46391 * 60.00431 * 14 13 12 35 35 H 1.09002 * 109.47472 * 300.00702 * 14 13 12 36 36 H 1.09001 * 109.46652 * 60.00605 * 15 14 13 37 37 H 1.08992 * 109.47514 * 300.00694 * 15 14 13 38 38 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 39 39 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 40 40 H 1.08008 * 126.41598 * 61.44100 * 19 17 16 41 41 H 0.97007 * 124.44013 * 180.12050 * 21 20 19 42 42 H 1.08998 * 109.46906 * 59.99557 * 24 12 11 43 43 H 1.09001 * 109.47091 * 179.97438 * 24 12 11 44 44 H 1.08994 * 109.47263 * 299.99778 * 25 9 7 45 45 H 1.08998 * 109.47068 * 60.00240 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 0.6002 -5.0685 1.2478 13 7 -0.1348 -6.3404 1.2469 14 6 -0.5020 -6.7372 2.6127 15 6 -1.2647 -8.0629 2.5710 16 6 -1.6477 -8.4758 3.9936 17 6 -2.4099 -9.8018 3.9520 18 1 -1.8324 -10.5585 3.4210 19 6 -3.7670 -9.6166 3.3059 20 7 -4.6443 -9.9212 4.1856 21 7 -4.0900 -10.3115 5.4007 22 6 -2.7418 -10.2711 5.3556 23 8 -1.9645 -10.5499 6.2441 24 6 -0.3941 -3.9055 1.2478 25 6 0.3718 -2.5804 1.2489 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 2.8719 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 2.1885 -5.8156 -0.0007 31 1 0.8539 -5.0445 -0.8913 32 1 1.2266 -5.0110 2.1379 33 1 0.3982 -7.0656 0.7906 34 1 -1.1344 -5.9684 3.0567 35 1 0.4008 -6.8557 3.2119 36 1 -0.6326 -8.8318 2.1269 37 1 -2.1675 -7.9440 1.9721 38 1 -0.7451 -8.5946 4.5930 39 1 -2.2800 -7.7068 4.4374 40 1 -3.9561 -9.2878 2.2946 41 1 -4.6051 -10.5781 6.1783 42 1 -1.0204 -3.9631 0.3575 43 1 -1.0213 -3.9638 2.1373 44 1 0.9986 -2.5228 2.1387 45 1 -0.3366 -1.7519 1.2493 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -34.414373 kcal Electronic energy + Delta-G solvation = -22939.988397 eV Core-core repulsion = 19570.321390 eV Total energy + Delta-G solvation = -3369.667007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29442 -39.71233 -38.58451 -37.14138 -35.32512 -33.93527 -32.11503 -31.34723 -30.85688 -28.94503 -26.38300 -24.86013 -23.45064 -22.92497 -22.02688 -21.77609 -21.62122 -20.30492 -18.86805 -18.36990 -17.20381 -16.82914 -16.55675 -16.31897 -15.99348 -15.80923 -15.47511 -15.30287 -14.81872 -14.64863 -14.47987 -14.15735 -13.99681 -13.50221 -13.34252 -13.08407 -12.91965 -12.87982 -12.72697 -12.50538 -12.25745 -12.19137 -11.98169 -11.80169 -11.69086 -11.60734 -11.44211 -11.10330 -10.82903 -10.69926 -10.47049 -10.32533 -10.16426 -9.23700 -8.04612 -6.18639 0.59795 1.41991 1.42834 1.50458 1.55701 1.72326 2.45038 2.83414 3.20548 3.24749 3.31379 3.78603 3.95385 4.02581 4.12151 4.25655 4.39671 4.46938 4.53504 4.57835 4.66223 4.73145 4.75994 4.88060 4.91312 4.93429 4.98725 5.03769 5.08141 5.10762 5.22837 5.34472 5.35575 5.47470 5.48889 5.54875 5.62707 5.65217 5.75461 6.08264 6.20621 6.27016 6.45349 6.50625 6.70176 6.86106 6.94750 7.49101 8.98870 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032514 B = 0.002304 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.953709 B =12147.826433 C =12406.880071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.102 4.102 11 C -0.106 4.106 12 C 0.101 3.899 13 N -0.684 5.684 14 C 0.055 3.945 15 C -0.103 4.103 16 C -0.082 4.082 17 C -0.141 4.141 18 H 0.162 0.838 19 C 0.112 3.888 20 N -0.267 5.267 21 N -0.577 5.577 22 C 0.490 3.510 23 O -0.546 6.546 24 C -0.090 4.090 25 C -0.102 4.102 26 H 0.259 0.741 27 H -0.007 1.007 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.349 0.651 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.253 0.747 41 H 0.437 0.563 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.021 0.979 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -21.652 4.625 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.009 4.009 13 N -0.315 5.315 14 C -0.074 4.074 15 C -0.140 4.140 16 C -0.122 4.122 17 C -0.165 4.165 18 H 0.179 0.821 19 C -0.101 4.101 20 N -0.072 5.072 21 N -0.324 5.324 22 C 0.277 3.723 23 O -0.422 6.422 24 C -0.129 4.129 25 C -0.141 4.141 26 H 0.068 0.932 27 H 0.011 0.989 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.268 0.732 41 H 0.282 0.718 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.721 -21.507 5.250 23.446 hybrid contribution 1.715 1.020 0.955 2.212 sum -6.005 -20.487 6.205 22.232 Atomic orbital electron populations 1.70017 1.07088 1.26983 1.51491 1.25735 0.95671 1.02276 0.95047 0.85744 0.78487 0.79452 0.78761 1.19655 1.21019 1.19829 1.21637 0.92982 0.92565 1.50267 0.93213 1.18628 0.93093 0.92270 0.93361 1.21477 0.97872 0.94687 0.99937 1.21612 0.97973 0.97174 0.97661 1.21328 0.92992 0.89722 0.96816 1.60435 1.48211 1.04557 1.18327 1.22025 0.98479 0.97775 0.89161 1.21501 1.01936 0.95570 0.95014 1.21155 0.99444 0.92478 0.99102 1.21975 0.98980 1.02498 0.93043 0.82084 1.27952 0.88831 0.92939 1.00397 1.74956 1.26667 1.13271 0.92328 1.47749 1.06168 1.65038 1.13432 1.21914 0.83230 0.76231 0.90967 1.90791 1.54829 1.50956 1.45589 1.21423 0.97326 0.93979 1.00128 1.21423 0.98752 0.96433 0.97501 0.93166 0.98879 0.93732 0.93392 0.90548 0.92065 0.95009 0.83207 0.92484 0.95764 0.89604 0.88901 0.91281 0.91952 0.73150 0.71768 0.93447 0.93529 0.96038 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.88 8.56 25.60 0.22 -29.67 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.04 2.25 2.10 -11.54 -0.02 2.22 16 10 C -0.10 -4.06 5.14 30.60 0.16 -3.91 16 11 C -0.11 -3.31 5.19 30.60 0.16 -3.15 16 12 C 0.10 3.08 2.49 44.92 0.11 3.19 16 13 N -0.68 -15.35 6.31 -491.56 -3.10 -18.45 16 14 C 0.05 1.03 5.48 86.30 0.47 1.50 16 15 C -0.10 -1.07 5.33 30.59 0.16 -0.91 16 16 C -0.08 -0.98 4.74 30.59 0.15 -0.84 16 17 C -0.14 -1.45 3.04 -11.74 -0.04 -1.49 16 18 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 19 C 0.11 0.81 11.17 88.91 0.99 1.81 16 20 N -0.27 -3.54 12.22 -49.90 -0.61 -4.15 16 21 N -0.58 -8.88 7.13 -172.51 -1.23 -10.11 16 22 C 0.49 9.06 8.26 87.94 0.73 9.79 16 23 O -0.55 -14.69 18.03 -3.09 -0.06 -14.75 16 24 C -0.09 -3.42 5.43 30.61 0.17 -3.25 16 25 C -0.10 -4.88 4.98 30.61 0.15 -4.72 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 1.01 7.80 -2.39 -0.02 1.00 16 33 H 0.35 6.30 8.35 -89.69 -0.75 5.55 16 34 H 0.06 1.26 7.43 -2.39 -0.02 1.24 16 35 H 0.02 0.47 8.06 -2.39 -0.02 0.45 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.75 7.33 -2.39 -0.02 0.74 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.25 -0.26 7.73 -2.91 -0.02 -0.29 16 41 H 0.44 5.53 8.96 -213.92 -1.92 3.62 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.66 7.45 -2.39 -0.02 1.64 16 44 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 Total: -1.00 -71.20 357.88 -0.55 -71.75 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -1.68 Total: 11.34 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.86 Total: -28.35 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.70 Total: -86.01 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.06 Total: -14.75 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.20 -0.55 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.332 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds