Wall clock time and date at job start Tue Mar 31 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53003 * 109.46915 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47301 * 60.00084 * 11 10 9 13 13 N 1.46498 * 109.47059 * 180.02562 * 12 11 10 14 14 C 1.35046 * 126.40166 * 60.02226 * 13 12 11 15 15 N 1.30495 * 108.69989 * 179.97438 * 14 13 12 16 16 C 1.34124 * 109.25981 * 0.02562 * 15 14 13 17 17 C 1.34674 * 108.01928 * 359.73317 * 16 15 14 18 18 C 1.50703 * 126.59257 * 180.28533 * 17 16 15 19 19 C 1.52996 * 109.47095 * 85.16161 * 18 17 16 20 20 H 1.09003 * 109.47168 * 304.99592 * 19 18 17 21 21 N 1.46895 * 109.47563 * 65.00048 * 19 18 17 22 22 C 1.53005 * 109.46846 * 184.99993 * 19 18 17 23 23 O 1.42903 * 109.46907 * 174.99746 * 22 19 18 24 24 C 1.53005 * 109.46653 * 299.99854 * 12 11 10 25 25 C 1.52994 * 109.46916 * 60.00417 * 24 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09003 * 109.47532 * 300.00309 * 10 9 7 29 29 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 30 30 H 1.09000 * 109.46939 * 299.99421 * 11 10 9 31 31 H 1.09004 * 109.47038 * 180.02562 * 11 10 9 32 32 H 1.08994 * 109.46974 * 59.99825 * 12 11 10 33 33 H 1.08002 * 125.64435 * 359.96410 * 14 13 12 34 34 H 1.08003 * 125.99188 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46961 * 205.16079 * 18 17 16 36 36 H 1.09000 * 109.46926 * 325.16269 * 18 17 16 37 37 H 1.00906 * 111.00182 * 296.04935 * 21 19 18 38 38 H 1.00901 * 111.00074 * 59.99570 * 21 19 18 39 39 H 1.08996 * 109.47170 * 294.99771 * 22 19 18 40 40 H 1.08999 * 109.47036 * 55.00387 * 22 19 18 41 41 H 0.96703 * 114.00146 * 180.02562 * 23 22 19 42 42 H 1.08994 * 109.47407 * 299.99706 * 24 12 11 43 43 H 1.09001 * 109.46679 * 179.97438 * 24 12 11 44 44 H 1.09004 * 109.46806 * 179.97438 * 25 24 12 45 45 H 1.09000 * 109.47828 * 59.99866 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.3713 -2.5857 1.2434 11 6 -0.3933 -3.9110 1.2378 12 6 0.6012 -5.0736 1.2330 13 7 -0.1310 -6.3425 1.2270 14 6 -1.0015 -6.7610 0.2832 15 7 -1.4508 -7.9386 0.6211 16 6 -0.8894 -8.3101 1.7812 17 6 -0.0562 -7.3278 2.1742 18 6 0.7932 -7.3147 3.4190 19 6 2.1118 -8.0404 3.1444 20 1 1.9037 -9.0431 2.7708 21 7 2.8819 -7.2938 2.1407 22 6 2.9204 -8.1364 4.4397 23 8 4.0969 -8.9145 4.2102 24 6 1.4809 -4.9870 -0.0159 25 6 2.2455 -3.6618 -0.0101 26 1 -0.4850 0.8401 -0.0004 27 1 0.6244 -2.5529 -0.8956 28 1 0.9978 -2.5319 2.1338 29 1 -0.3370 -1.7572 1.2471 30 1 -1.0200 -3.9651 0.3476 31 1 -1.0204 -3.9725 2.1273 32 1 1.2277 -5.0194 2.1232 33 1 -1.2798 -6.2118 -0.6042 34 1 -1.0706 -9.2366 2.3060 35 1 0.9990 -6.2839 3.7076 36 1 0.2623 -7.8190 4.2265 37 1 2.3971 -7.2717 1.2559 38 1 3.0875 -6.3603 2.4636 39 1 3.2045 -7.1359 4.7658 40 1 2.3152 -8.6120 5.2115 41 1 4.6586 -9.0178 4.9905 42 1 0.8543 -5.0412 -0.9061 43 1 2.1897 -5.8150 -0.0191 44 1 2.8725 -3.6003 -0.8997 45 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:19 Heat of formation + Delta-G solvation = -15.747655 kcal Electronic energy + Delta-G solvation = -24618.916857 eV Core-core repulsion = 21250.059299 eV Total energy + Delta-G solvation = -3368.857558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13892 -37.95106 -37.80167 -35.33786 -33.86089 -32.03381 -30.82420 -30.12660 -28.68543 -28.26625 -25.65445 -24.90064 -22.33831 -21.95382 -21.47909 -20.73357 -19.47131 -18.75349 -17.52690 -16.97263 -16.47340 -16.36973 -15.29082 -15.06003 -14.78277 -14.56123 -14.12289 -13.74877 -13.52257 -13.44183 -13.37866 -13.12817 -13.00341 -12.75758 -12.35567 -12.06714 -11.91820 -11.64348 -11.25534 -11.01956 -10.94882 -10.75164 -10.67880 -10.48544 -10.20728 -10.19323 -9.80383 -9.68155 -9.41603 -9.05616 -8.89580 -8.82199 -8.42846 -8.15461 -6.09983 -4.16567 2.13731 2.92567 3.24794 3.28981 3.30393 3.32715 3.98447 4.34829 4.36574 4.60475 4.75064 4.85169 4.90650 5.00601 5.07755 5.12894 5.20486 5.21446 5.27375 5.34657 5.44625 5.57465 5.67105 5.75267 5.82321 5.97899 6.01095 6.07533 6.18370 6.35469 6.43900 6.54037 6.67481 6.86277 6.87810 6.97908 7.06386 7.25649 7.35556 7.38911 7.49849 7.60405 7.82595 7.97644 8.22741 8.31823 8.87137 9.49274 10.95832 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.004192 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.404667 B = 6677.830874 C = 7707.250052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.106 4.106 11 C -0.122 4.122 12 C 0.132 3.868 13 N -0.441 5.441 14 C 0.189 3.811 15 N -0.500 5.500 16 C -0.027 4.027 17 C -0.034 4.034 18 C -0.078 4.078 19 C 0.097 3.903 20 H 0.090 0.910 21 N -0.832 5.832 22 C 0.085 3.915 23 O -0.558 6.558 24 C -0.124 4.124 25 C -0.105 4.105 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.200 0.800 34 H 0.163 0.837 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.343 0.657 38 H 0.337 0.663 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.373 0.627 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -13.323 8.311 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.161 4.161 12 C 0.030 3.970 13 N -0.122 5.122 14 C -0.093 4.093 15 N -0.218 5.218 16 C -0.176 4.176 17 C -0.149 4.149 18 C -0.118 4.118 19 C -0.015 4.015 20 H 0.108 0.892 21 N -0.362 5.362 22 C 0.007 3.993 23 O -0.362 6.362 24 C -0.162 4.162 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.217 0.783 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.219 0.781 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.592 -14.107 7.339 15.981 hybrid contribution 0.252 2.197 1.057 2.451 sum 1.844 -11.910 8.396 14.688 Atomic orbital electron populations 1.69839 1.05884 1.26660 1.50539 1.24960 0.94845 0.99099 0.94967 0.86685 0.79645 0.83186 0.78655 1.20252 1.21301 1.20304 1.21142 0.92901 0.90539 1.50831 0.92686 1.18685 0.92554 0.91696 0.94156 1.21650 0.99755 0.93875 0.99175 1.22022 0.97261 0.95398 1.01380 1.21804 0.94033 0.80541 1.00622 1.45879 1.33103 1.15357 1.17868 1.24796 0.94116 0.93714 0.96668 1.70285 1.26063 1.11507 1.13964 1.21970 0.99786 1.00031 0.95840 1.20977 1.06020 0.92212 0.95712 1.20811 0.95492 1.02043 0.93482 1.21461 0.89083 0.98799 0.92194 0.89172 1.58871 1.50362 1.21173 1.05815 1.22149 0.86835 0.94494 0.95865 1.86598 1.36009 1.74249 1.39366 1.21999 0.98234 0.99838 0.96126 1.21619 0.98641 0.93037 1.00998 0.92875 0.95423 0.94512 0.88234 0.91809 0.93189 0.89282 0.78302 0.82014 0.90978 0.89217 0.84273 0.85024 0.93758 0.93338 0.78071 0.91478 0.92579 0.92407 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 11.33 55.43 0.63 -23.37 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.13 8.56 -34.44 -0.29 -13.43 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.05 1.05 2.10 -91.77 -0.19 0.86 16 10 C -0.11 -2.20 4.98 -26.73 -0.13 -2.33 16 11 C -0.12 -2.06 5.25 -26.73 -0.14 -2.20 16 12 C 0.13 1.89 2.56 -67.93 -0.17 1.72 16 13 N -0.44 -6.10 2.48 -106.92 -0.26 -6.37 16 14 C 0.19 2.79 11.55 -90.38 -1.04 1.75 16 15 N -0.50 -7.95 11.25 -14.66 -0.16 -8.11 16 16 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 17 C -0.03 -0.44 5.41 -81.60 -0.44 -0.88 16 18 C -0.08 -0.79 5.09 -27.88 -0.14 -0.93 16 19 C 0.10 1.03 3.07 -67.71 -0.21 0.82 16 20 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 21 N -0.83 -10.08 9.14 -4.67 -0.04 -10.13 16 22 C 0.09 0.76 6.64 37.16 0.25 1.01 16 23 O -0.56 -5.73 13.61 -35.23 -0.48 -6.21 16 24 C -0.12 -1.84 5.23 -26.73 -0.14 -1.98 16 25 C -0.10 -1.88 5.14 -26.74 -0.14 -2.02 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.40 6.08 -51.93 -0.32 2.08 16 30 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.24 6.40 -51.93 -0.33 0.91 16 33 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 34 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.07 0.75 7.01 -51.93 -0.36 0.39 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.34 4.48 6.19 -39.29 -0.24 4.24 16 38 H 0.34 3.95 8.69 -39.29 -0.34 3.61 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.37 2.07 9.12 45.56 0.42 2.49 16 42 H 0.07 1.02 7.94 -51.93 -0.41 0.60 16 43 H 0.06 0.77 6.45 -51.93 -0.33 0.44 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -29.06 352.62 -9.67 -38.73 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.53 Total: 11.50 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -3.11 Total: -16.67 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.16 Total: -47.98 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.48 Total: -6.21 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.06 -9.67 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.984 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds