Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 11 11 C 1.53003 * 109.46915 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47301 * 60.00084 * 11 10 9 13 13 N 1.46498 * 109.47059 * 180.02562 * 12 11 10 14 14 C 1.35046 * 126.40166 * 60.02226 * 13 12 11 15 15 N 1.30495 * 108.69989 * 179.97438 * 14 13 12 16 16 C 1.34124 * 109.25981 * 0.02562 * 15 14 13 17 17 C 1.34674 * 108.01928 * 359.73317 * 16 15 14 18 18 C 1.50703 * 126.59257 * 180.28533 * 17 16 15 19 19 C 1.52996 * 109.47095 * 85.16161 * 18 17 16 20 20 H 1.09003 * 109.47168 * 304.99592 * 19 18 17 21 21 N 1.46895 * 109.47563 * 65.00048 * 19 18 17 22 22 C 1.53005 * 109.46846 * 184.99993 * 19 18 17 23 23 O 1.42903 * 109.46907 * 174.99746 * 22 19 18 24 24 C 1.53005 * 109.46653 * 299.99854 * 12 11 10 25 25 C 1.52994 * 109.46916 * 60.00417 * 24 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09003 * 109.47532 * 300.00309 * 10 9 7 29 29 H 1.09001 * 109.47094 * 60.00208 * 10 9 7 30 30 H 1.09000 * 109.46939 * 299.99421 * 11 10 9 31 31 H 1.09004 * 109.47038 * 180.02562 * 11 10 9 32 32 H 1.08994 * 109.46974 * 59.99825 * 12 11 10 33 33 H 1.08002 * 125.64435 * 359.96410 * 14 13 12 34 34 H 1.08003 * 125.99188 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.46961 * 205.16079 * 18 17 16 36 36 H 1.09000 * 109.46926 * 325.16269 * 18 17 16 37 37 H 1.00906 * 111.00182 * 296.04935 * 21 19 18 38 38 H 1.00901 * 111.00074 * 59.99570 * 21 19 18 39 39 H 1.08996 * 109.47170 * 294.99771 * 22 19 18 40 40 H 1.08999 * 109.47036 * 55.00387 * 22 19 18 41 41 H 0.96703 * 114.00146 * 180.02562 * 23 22 19 42 42 H 1.08994 * 109.47407 * 299.99706 * 24 12 11 43 43 H 1.09001 * 109.46679 * 179.97438 * 24 12 11 44 44 H 1.09004 * 109.46806 * 179.97438 * 25 24 12 45 45 H 1.09000 * 109.47828 * 59.99866 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 0.3713 -2.5857 1.2434 11 6 -0.3933 -3.9110 1.2378 12 6 0.6012 -5.0736 1.2330 13 7 -0.1310 -6.3425 1.2270 14 6 -1.0015 -6.7610 0.2832 15 7 -1.4508 -7.9386 0.6211 16 6 -0.8894 -8.3101 1.7812 17 6 -0.0562 -7.3278 2.1742 18 6 0.7932 -7.3147 3.4190 19 6 2.1118 -8.0404 3.1444 20 1 1.9037 -9.0431 2.7708 21 7 2.8819 -7.2938 2.1407 22 6 2.9204 -8.1364 4.4397 23 8 4.0969 -8.9145 4.2102 24 6 1.4809 -4.9870 -0.0159 25 6 2.2455 -3.6618 -0.0101 26 1 -0.4850 0.8401 -0.0004 27 1 0.6244 -2.5529 -0.8956 28 1 0.9978 -2.5319 2.1338 29 1 -0.3370 -1.7572 1.2471 30 1 -1.0200 -3.9651 0.3476 31 1 -1.0204 -3.9725 2.1273 32 1 1.2277 -5.0194 2.1232 33 1 -1.2798 -6.2118 -0.6042 34 1 -1.0706 -9.2366 2.3060 35 1 0.9990 -6.2839 3.7076 36 1 0.2623 -7.8190 4.2265 37 1 2.3971 -7.2717 1.2559 38 1 3.0875 -6.3603 2.4636 39 1 3.2045 -7.1359 4.7658 40 1 2.3152 -8.6120 5.2115 41 1 4.6586 -9.0178 4.9905 42 1 0.8543 -5.0412 -0.9061 43 1 2.1897 -5.8150 -0.0191 44 1 2.8725 -3.6003 -0.8997 45 1 2.8721 -3.6076 0.8801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -34.641515 kcal Electronic energy + Delta-G solvation = -24619.736156 eV Core-core repulsion = 21250.059299 eV Total energy + Delta-G solvation = -3369.676857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.22967 -39.37960 -38.57173 -36.14925 -35.43411 -33.62095 -31.85552 -31.57795 -30.16546 -29.13137 -26.65818 -26.49186 -23.69637 -23.42450 -22.48850 -21.81390 -20.61711 -20.16073 -18.44326 -18.36750 -17.87126 -17.25314 -16.65365 -16.22737 -16.02491 -15.69753 -15.39203 -14.95760 -14.75777 -14.62995 -14.39992 -14.27990 -14.06976 -13.95852 -13.63460 -13.54741 -13.10329 -12.96560 -12.70810 -12.63409 -12.39509 -12.27826 -12.01327 -11.89127 -11.72083 -11.30701 -10.94825 -10.91235 -10.83312 -10.76136 -10.41373 -10.30260 -9.77382 -9.16485 -8.08229 -6.20989 1.07708 1.42531 1.43720 1.50354 1.80193 2.19443 2.44112 3.19625 3.27474 3.48505 3.56371 3.76135 3.81554 3.87441 3.98712 4.09080 4.19650 4.35324 4.41260 4.44303 4.46932 4.51576 4.62670 4.66467 4.71291 4.74949 4.78465 4.82182 4.84674 5.05249 5.06857 5.15215 5.28024 5.35969 5.48595 5.59493 5.65030 5.84439 6.00784 6.16514 6.19331 6.27802 6.40207 6.45916 6.91467 7.03071 7.14024 7.47703 8.95412 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.004192 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.404667 B = 6677.830874 C = 7707.250052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.096 4.096 11 C -0.112 4.112 12 C 0.148 3.852 13 N -0.440 5.440 14 C 0.175 3.825 15 N -0.525 5.525 16 C -0.044 4.044 17 C -0.026 4.026 18 C -0.071 4.071 19 C 0.100 3.900 20 H 0.077 0.923 21 N -0.841 5.841 22 C 0.085 3.915 23 O -0.584 6.584 24 C -0.113 4.113 25 C -0.096 4.096 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.209 0.791 34 H 0.182 0.818 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.335 0.665 38 H 0.339 0.661 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.392 0.608 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -14.411 9.841 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.134 4.134 11 C -0.150 4.150 12 C 0.046 3.954 13 N -0.121 5.121 14 C -0.107 4.107 15 N -0.244 5.244 16 C -0.192 4.192 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.013 4.013 20 H 0.095 0.905 21 N -0.371 5.371 22 C 0.007 3.993 23 O -0.392 6.392 24 C -0.151 4.151 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.225 0.775 34 H 0.199 0.801 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.241 0.759 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.576 -15.213 8.890 17.807 hybrid contribution -0.042 2.503 0.577 2.569 sum 2.534 -12.710 9.467 16.050 Atomic orbital electron populations 1.69984 1.07024 1.27018 1.51498 1.25654 0.95548 1.02068 0.95010 0.85804 0.78506 0.79722 0.78771 1.19975 1.21374 1.19608 1.21573 0.93103 0.92179 1.50211 0.92904 1.18653 0.93045 0.92324 0.93400 1.21371 0.98909 0.94815 0.98352 1.21814 0.97343 0.94494 1.01349 1.21499 0.93113 0.79933 1.00874 1.45766 1.33031 1.15200 1.18137 1.25039 0.94560 0.93840 0.97304 1.70268 1.26891 1.12096 1.15106 1.22379 1.00045 1.01137 0.95620 1.21408 1.05478 0.91293 0.95931 1.20864 0.95078 1.02521 0.92709 1.21456 0.89372 0.97799 0.92651 0.90491 1.58890 1.50831 1.21471 1.05931 1.22188 0.86723 0.95072 0.95298 1.86535 1.36848 1.74520 1.41270 1.21852 0.98312 0.98590 0.96349 1.21437 0.97819 0.92914 1.01197 0.93186 0.98591 0.94445 0.91906 0.92585 0.92523 0.87963 0.77494 0.80114 0.90658 0.86814 0.85126 0.84784 0.93112 0.90932 0.75893 0.91811 0.90685 0.92786 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 11.33 21.45 0.24 -50.31 16 2 C 0.02 0.84 5.31 84.66 0.45 1.29 16 3 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.53 -27.38 8.56 25.60 0.22 -27.16 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.04 1.98 2.10 -11.54 -0.02 1.96 16 10 C -0.10 -4.00 4.98 30.59 0.15 -3.85 16 11 C -0.11 -3.70 5.25 30.59 0.16 -3.54 16 12 C 0.15 4.00 2.56 44.99 0.12 4.12 16 13 N -0.44 -11.41 2.48 -492.18 -1.22 -12.63 16 14 C 0.17 4.98 11.55 180.26 2.08 7.06 16 15 N -0.53 -16.10 11.25 -200.31 -2.25 -18.36 16 16 C -0.04 -1.14 11.79 83.53 0.98 -0.15 16 17 C -0.03 -0.61 5.41 40.95 0.22 -0.39 16 18 C -0.07 -1.22 5.09 29.85 0.15 -1.07 16 19 C 0.10 1.84 3.07 44.92 0.14 1.97 16 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 21 N -0.84 -18.48 9.14 -168.68 -1.54 -20.02 16 22 C 0.09 1.26 6.64 71.98 0.48 1.73 16 23 O -0.58 -10.57 13.61 -148.98 -2.03 -12.59 16 24 C -0.11 -3.20 5.23 30.59 0.16 -3.04 16 25 C -0.10 -3.36 5.14 30.59 0.16 -3.20 16 26 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 3.12 6.08 -2.39 -0.01 3.10 16 30 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.10 2.56 6.40 -2.39 -0.02 2.55 16 33 H 0.21 5.29 8.06 -2.91 -0.02 5.27 16 34 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.07 1.29 7.01 -2.39 -0.02 1.28 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.33 8.04 6.19 -89.69 -0.55 7.49 16 38 H 0.34 7.07 8.69 -89.69 -0.78 6.29 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.39 3.40 9.12 -74.06 -0.68 2.72 16 42 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 43 H 0.07 1.90 6.45 -2.39 -0.02 1.88 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.91 352.62 -0.33 -63.24 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -1.00 Total: 31.02 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 5.45 Total: -24.27 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -4.77 Total: -101.31 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -2.03 Total: -12.59 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -62.91 -0.33 -63.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.602 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds