Wall clock time and date at job start Tue Mar 31 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 125.89401 * 2 1 4 4 C 1.40891 * 107.42047 * 180.29637 * 3 2 1 5 5 C 1.34852 * 107.41236 * 359.74083 * 4 3 2 6 6 C 1.50706 * 125.88534 * 179.97438 * 5 4 3 7 7 N 1.36338 * 108.22118 * 0.02562 * 5 4 3 8 8 C 1.46503 * 125.63161 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.46578 * 185.33689 * 8 7 5 10 10 C 1.53002 * 109.47470 * 65.33930 * 8 7 5 11 11 C 1.50692 * 109.47198 * 305.33597 * 8 7 5 12 12 O 1.21275 * 120.00475 * 0.02562 * 11 8 7 13 13 N 1.34775 * 119.99999 * 180.02562 * 11 8 7 14 14 C 1.46508 * 120.00213 * 179.72838 * 13 11 8 15 15 C 1.52996 * 109.47230 * 180.27237 * 14 13 11 16 16 C 1.53001 * 109.47238 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47115 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99488 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00422 * 359.97438 * 18 17 16 20 20 C 1.38820 * 119.99553 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47152 * 89.99787 * 22 20 18 24 24 H 1.48499 * 109.46827 * 209.99349 * 22 20 18 25 25 H 1.48501 * 109.47127 * 329.99731 * 22 20 18 26 26 H 1.09000 * 109.46515 * 265.06509 * 1 2 3 27 27 H 1.09001 * 109.47428 * 25.06110 * 1 2 3 28 28 H 1.09000 * 109.47365 * 145.06939 * 1 2 3 29 29 H 1.08003 * 126.28758 * 0.03763 * 3 2 1 30 30 H 1.07999 * 126.29142 * 179.73304 * 4 3 2 31 31 H 1.09005 * 109.47075 * 275.72936 * 6 5 4 32 32 H 1.08997 * 109.47436 * 35.73072 * 6 5 4 33 33 H 1.09001 * 109.46648 * 155.73225 * 6 5 4 34 34 H 1.08993 * 109.47391 * 184.85892 * 10 8 7 35 35 H 1.08996 * 109.47029 * 304.85981 * 10 8 7 36 36 H 1.09005 * 109.46944 * 64.85668 * 10 8 7 37 37 H 0.97005 * 120.00244 * 359.97438 * 13 11 8 38 38 H 1.09003 * 109.46382 * 300.26871 * 14 13 11 39 39 H 1.08993 * 109.47132 * 60.26503 * 14 13 11 40 40 H 1.09003 * 109.47139 * 299.99170 * 15 14 13 41 41 H 1.09002 * 109.47507 * 59.99762 * 15 14 13 42 42 H 1.09003 * 109.46489 * 299.99704 * 16 15 14 43 43 H 1.08993 * 109.47017 * 59.99331 * 16 15 14 44 44 H 0.96993 * 120.00340 * 359.97438 * 17 16 15 45 45 H 0.97000 * 119.99916 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6460 -0.0070 5 6 3.6089 -0.7023 -0.0051 6 6 4.8134 -1.6081 -0.0113 7 7 2.3063 -1.1045 0.0021 8 6 1.8421 -2.4941 0.0068 9 1 0.7560 -2.5146 -0.0833 10 6 2.2580 -3.1664 1.3168 11 6 2.4565 -3.2328 -1.1540 12 8 3.2084 -2.6557 -1.9106 13 7 2.1704 -4.5349 -1.3516 14 6 2.7630 -5.2517 -2.4836 15 6 2.2734 -6.7012 -2.4822 16 6 2.8918 -7.4495 -3.6648 17 7 2.4226 -8.8373 -3.6638 18 6 2.8464 -9.7040 -4.6356 19 1 3.5262 -9.3644 -5.4029 20 6 2.4014 -11.0189 -4.6350 21 7 1.5725 -11.4327 -3.7001 22 14 2.9789 -12.2011 -5.9610 23 1 4.2195 -12.8820 -5.5110 24 1 1.9230 -13.2137 -6.2154 25 1 3.2535 -11.4473 -7.2107 26 1 -0.3632 -0.0884 1.0239 27 1 -0.3634 0.9309 -0.4353 28 1 -0.3634 -0.8425 -0.5884 29 1 1.9671 2.1207 0.0006 30 1 4.5160 1.2691 -0.0128 31 1 5.1592 -1.7458 -1.0358 32 1 5.6088 -1.1591 0.5834 33 1 4.5431 -2.5747 0.4139 34 1 1.9891 -4.2221 1.2847 35 1 3.3356 -3.0697 1.4486 36 1 1.7455 -2.6860 2.1504 37 1 1.5692 -4.9967 -0.7463 38 1 2.4662 -4.7688 -3.4147 39 1 3.8492 -5.2349 -2.3958 40 1 2.5702 -7.1840 -1.5511 41 1 1.1871 -6.7180 -2.5701 42 1 2.5947 -6.9666 -4.5957 43 1 3.9781 -7.4327 -3.5774 44 1 1.8123 -9.1425 -2.9744 45 1 1.2618 -12.3516 -3.6994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176937740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:20 Heat of formation + Delta-G solvation = 15.286959 kcal Electronic energy + Delta-G solvation = -23207.593128 eV Core-core repulsion = 19840.081332 eV Total energy + Delta-G solvation = -3367.511796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79791 -39.63496 -36.17380 -34.68853 -34.34348 -32.74372 -32.01635 -29.97483 -29.40686 -29.01984 -25.81936 -24.46875 -24.17052 -22.65299 -21.35443 -20.94285 -20.38070 -18.90045 -17.37780 -16.91164 -16.68084 -16.00337 -15.65324 -15.22300 -14.89202 -14.52123 -14.17871 -13.86252 -13.61416 -13.41567 -13.33522 -13.31271 -13.06554 -12.89320 -12.73023 -12.59405 -12.31924 -12.19968 -11.99827 -11.78353 -11.73543 -11.27477 -11.03704 -10.97232 -10.83517 -10.68748 -10.16121 -10.01444 -9.75154 -9.21977 -8.92534 -8.68622 -7.80994 -6.98671 -5.81754 -3.10903 2.04630 2.30511 2.54436 2.99046 3.04867 3.41051 3.46311 3.47994 4.19388 4.36401 4.41151 4.54877 4.59709 4.90709 4.98165 5.02471 5.06938 5.07578 5.20716 5.22598 5.29757 5.48179 5.50928 5.52781 5.52846 5.62200 5.66170 5.73175 5.85516 5.96353 6.02494 6.10579 6.24177 6.24594 6.28526 6.33795 6.71457 6.75681 7.03520 7.15874 7.20027 7.33933 7.66099 7.93697 8.37179 9.48428 10.04762 10.39382 11.41233 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036367 B = 0.002342 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.738059 B =11954.989972 C =12188.480571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.003 3.997 3 C -0.191 4.191 4 C -0.210 4.210 5 C 0.052 3.948 6 C -0.084 4.084 7 N -0.426 5.426 8 C 0.112 3.888 9 H 0.121 0.879 10 C -0.166 4.166 11 C 0.498 3.502 12 O -0.515 6.515 13 N -0.722 5.722 14 C 0.124 3.876 15 C -0.137 4.137 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 22.425 13.025 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.215 4.215 4 C -0.234 4.234 5 C -0.059 4.059 6 C -0.141 4.141 7 N -0.105 5.105 8 C 0.005 3.995 9 H 0.139 0.861 10 C -0.223 4.223 11 C 0.282 3.718 12 O -0.390 6.390 13 N -0.375 5.375 14 C 0.000 4.000 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.754 22.429 12.300 25.592 hybrid contribution -0.298 -1.090 -0.271 1.162 sum -1.052 21.339 12.029 24.518 Atomic orbital electron populations 1.20278 0.88531 1.03118 1.02047 1.20229 0.93151 0.85663 1.11605 1.20582 0.92830 0.97078 1.11056 1.20570 0.97194 0.92839 1.12806 1.20189 0.84307 0.94338 1.07059 1.20474 0.93332 0.97004 1.03271 1.43533 1.05775 1.03592 1.57562 1.21223 1.01168 0.81442 0.95669 0.86109 1.22284 1.03977 1.01150 0.94914 1.20516 0.82426 0.82542 0.86329 1.90773 1.35174 1.66953 1.46050 1.46034 1.49762 1.10317 1.31339 1.21400 0.98339 0.91945 0.88295 1.21949 1.01503 0.92993 1.01125 1.20511 0.96245 0.86321 0.94078 1.42330 1.56415 1.05294 1.33763 1.19242 1.22287 0.90979 1.04694 0.91081 1.24760 0.99969 0.97373 0.98939 1.69656 1.36742 1.16804 1.35117 0.86161 0.77726 0.80933 0.81211 1.21647 1.21718 1.20693 0.91415 0.90200 0.92214 0.84999 0.85021 0.90037 0.91173 0.92424 0.89984 0.90452 0.90484 0.76455 0.91233 0.91163 0.91218 0.91250 0.96057 0.96039 0.78305 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.86 36.00 0.36 -0.26 16 2 C 0.00 0.03 6.89 -81.79 -0.56 -0.53 16 3 C -0.19 -2.20 10.76 -39.78 -0.43 -2.62 16 4 C -0.21 -2.57 10.77 -39.78 -0.43 -3.00 16 5 C 0.05 0.64 5.75 -81.79 -0.47 0.17 16 6 C -0.08 -0.92 8.52 36.01 0.31 -0.61 16 7 N -0.43 -4.83 2.45 -102.18 -0.25 -5.08 16 8 C 0.11 1.01 3.17 -69.08 -0.22 0.79 16 9 H 0.12 0.84 6.72 -51.93 -0.35 0.49 16 10 C -0.17 -1.11 9.20 37.16 0.34 -0.77 16 11 C 0.50 5.78 6.32 -10.99 -0.07 5.71 16 12 O -0.51 -7.99 13.38 5.56 0.07 -7.92 16 13 N -0.72 -7.35 5.42 -60.30 -0.33 -7.68 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.53 16 15 C -0.14 -1.97 5.44 -26.73 -0.15 -2.12 16 16 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 17 N -0.73 -18.35 5.60 -59.91 -0.34 -18.68 16 18 C -0.24 -6.74 9.99 -15.05 -0.15 -6.89 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.42 7.23 -51.93 -0.38 0.04 16 29 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.08 1.03 7.24 -51.93 -0.38 0.66 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.59 4.85 -51.93 -0.25 0.34 16 34 H 0.08 0.41 7.43 -51.93 -0.39 0.02 16 35 H 0.08 0.60 5.42 -51.93 -0.28 0.32 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.40 2.99 7.83 -40.82 -0.32 2.67 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 9.94 7.67 -40.82 -0.31 9.63 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -34.18 362.96 -8.55 -42.73 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.27 Total: 7.27 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.61 Total: -6.10 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.19 Total: -58.74 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.07 Total: -7.92 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.18 -8.55 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176937740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.016 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds