Wall clock time and date at job start Tue Mar 31 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 125.89401 * 2 1 4 4 C 1.40891 * 107.42047 * 180.29637 * 3 2 1 5 5 C 1.34852 * 107.41236 * 359.74083 * 4 3 2 6 6 C 1.50706 * 125.88534 * 179.97438 * 5 4 3 7 7 N 1.36338 * 108.22118 * 0.02562 * 5 4 3 8 8 C 1.46503 * 125.63161 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.46578 * 185.33689 * 8 7 5 10 10 C 1.53002 * 109.47470 * 65.33930 * 8 7 5 11 11 C 1.50692 * 109.47198 * 305.33597 * 8 7 5 12 12 O 1.21275 * 120.00475 * 0.02562 * 11 8 7 13 13 N 1.34775 * 119.99999 * 180.02562 * 11 8 7 14 14 C 1.46508 * 120.00213 * 179.72838 * 13 11 8 15 15 C 1.52996 * 109.47230 * 180.27237 * 14 13 11 16 16 C 1.53001 * 109.47238 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47115 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99488 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00422 * 359.97438 * 18 17 16 20 20 C 1.38820 * 119.99553 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47152 * 89.99787 * 22 20 18 24 24 H 1.48499 * 109.46827 * 209.99349 * 22 20 18 25 25 H 1.48501 * 109.47127 * 329.99731 * 22 20 18 26 26 H 1.09000 * 109.46515 * 265.06509 * 1 2 3 27 27 H 1.09001 * 109.47428 * 25.06110 * 1 2 3 28 28 H 1.09000 * 109.47365 * 145.06939 * 1 2 3 29 29 H 1.08003 * 126.28758 * 0.03763 * 3 2 1 30 30 H 1.07999 * 126.29142 * 179.73304 * 4 3 2 31 31 H 1.09005 * 109.47075 * 275.72936 * 6 5 4 32 32 H 1.08997 * 109.47436 * 35.73072 * 6 5 4 33 33 H 1.09001 * 109.46648 * 155.73225 * 6 5 4 34 34 H 1.08993 * 109.47391 * 184.85892 * 10 8 7 35 35 H 1.08996 * 109.47029 * 304.85981 * 10 8 7 36 36 H 1.09005 * 109.46944 * 64.85668 * 10 8 7 37 37 H 0.97005 * 120.00244 * 359.97438 * 13 11 8 38 38 H 1.09003 * 109.46382 * 300.26871 * 14 13 11 39 39 H 1.08993 * 109.47132 * 60.26503 * 14 13 11 40 40 H 1.09003 * 109.47139 * 299.99170 * 15 14 13 41 41 H 1.09002 * 109.47507 * 59.99762 * 15 14 13 42 42 H 1.09003 * 109.46489 * 299.99704 * 16 15 14 43 43 H 1.08993 * 109.47017 * 59.99331 * 16 15 14 44 44 H 0.96993 * 120.00340 * 359.97438 * 17 16 15 45 45 H 0.97000 * 119.99916 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6460 -0.0070 5 6 3.6089 -0.7023 -0.0051 6 6 4.8134 -1.6081 -0.0113 7 7 2.3063 -1.1045 0.0021 8 6 1.8421 -2.4941 0.0068 9 1 0.7560 -2.5146 -0.0833 10 6 2.2580 -3.1664 1.3168 11 6 2.4565 -3.2328 -1.1540 12 8 3.2084 -2.6557 -1.9106 13 7 2.1704 -4.5349 -1.3516 14 6 2.7630 -5.2517 -2.4836 15 6 2.2734 -6.7012 -2.4822 16 6 2.8918 -7.4495 -3.6648 17 7 2.4226 -8.8373 -3.6638 18 6 2.8464 -9.7040 -4.6356 19 1 3.5262 -9.3644 -5.4029 20 6 2.4014 -11.0189 -4.6350 21 7 1.5725 -11.4327 -3.7001 22 14 2.9789 -12.2011 -5.9610 23 1 4.2195 -12.8820 -5.5110 24 1 1.9230 -13.2137 -6.2154 25 1 3.2535 -11.4473 -7.2107 26 1 -0.3632 -0.0884 1.0239 27 1 -0.3634 0.9309 -0.4353 28 1 -0.3634 -0.8425 -0.5884 29 1 1.9671 2.1207 0.0006 30 1 4.5160 1.2691 -0.0128 31 1 5.1592 -1.7458 -1.0358 32 1 5.6088 -1.1591 0.5834 33 1 4.5431 -2.5747 0.4139 34 1 1.9891 -4.2221 1.2847 35 1 3.3356 -3.0697 1.4486 36 1 1.7455 -2.6860 2.1504 37 1 1.5692 -4.9967 -0.7463 38 1 2.4662 -4.7688 -3.4147 39 1 3.8492 -5.2349 -2.3958 40 1 2.5702 -7.1840 -1.5511 41 1 1.1871 -6.7180 -2.5701 42 1 2.5947 -6.9666 -4.5957 43 1 3.9781 -7.4327 -3.5774 44 1 1.8123 -9.1425 -2.9744 45 1 1.2618 -12.3516 -3.6994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176937740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:20 Heat of formation + Delta-G solvation = -6.967703 kcal Electronic energy + Delta-G solvation = -23208.558162 eV Core-core repulsion = 19840.081332 eV Total energy + Delta-G solvation = -3368.476830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.61066 -40.57102 -37.55920 -35.98823 -35.34510 -33.73498 -33.48358 -31.42103 -30.23852 -29.86488 -27.20451 -25.58640 -24.99180 -24.19558 -22.62419 -21.94713 -21.23832 -19.81794 -19.11790 -18.03784 -17.55609 -16.98655 -16.82413 -16.36144 -16.09575 -15.79411 -15.30734 -15.22769 -14.89719 -14.52468 -14.30396 -14.15946 -14.05050 -13.93203 -13.38400 -13.32153 -13.30972 -13.22642 -12.95051 -12.82794 -12.73403 -12.61549 -12.51565 -12.44240 -12.09824 -12.06780 -11.99476 -11.80829 -11.00350 -10.96036 -10.19031 -9.53090 -9.03372 -8.64727 -7.98242 -5.27215 1.20486 1.41914 1.47258 1.48482 1.57106 1.76644 2.11900 2.19387 2.55012 3.35811 3.44541 3.72088 3.73347 3.77431 3.89433 4.06367 4.17372 4.25927 4.28527 4.42000 4.43226 4.57556 4.58410 4.69986 4.70359 4.71025 4.77901 4.80808 4.84961 4.92146 4.98464 5.10417 5.20279 5.25384 5.29663 5.34711 5.40660 5.47672 5.51448 6.20078 6.24736 6.31879 6.37263 6.55543 7.08428 7.31469 8.05951 8.29772 9.25168 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.036367 B = 0.002342 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.738059 B =11954.989972 C =12188.480571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.001 4.001 3 C -0.214 4.214 4 C -0.230 4.230 5 C 0.029 3.971 6 C -0.077 4.077 7 N -0.432 5.432 8 C 0.113 3.887 9 H 0.148 0.852 10 C -0.161 4.161 11 C 0.498 3.502 12 O -0.558 6.558 13 N -0.708 5.708 14 C 0.136 3.864 15 C -0.118 4.118 16 C 0.152 3.848 17 N -0.746 5.746 18 C -0.250 4.250 19 H 0.074 0.926 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.271 1.271 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.376 0.624 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 22.630 13.756 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.239 4.239 4 C -0.254 4.254 5 C -0.082 4.082 6 C -0.134 4.134 7 N -0.110 5.110 8 C 0.007 3.993 9 H 0.165 0.835 10 C -0.219 4.219 11 C 0.283 3.717 12 O -0.436 6.436 13 N -0.362 5.362 14 C 0.012 3.988 15 C -0.156 4.156 16 C 0.025 3.975 17 N -0.390 5.390 18 C -0.382 4.382 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.196 1.196 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.659 22.651 13.048 26.193 hybrid contribution -0.003 -1.075 -0.506 1.188 sum -1.662 21.576 12.542 25.011 Atomic orbital electron populations 1.20389 0.86012 1.03956 1.03453 1.20834 0.94800 0.85372 1.10085 1.20882 0.92772 0.98201 1.12016 1.20858 0.98034 0.93316 1.13185 1.20421 0.85239 0.94670 1.07866 1.20408 0.93544 0.97366 1.02092 1.43744 1.05496 1.04576 1.57157 1.21445 1.02305 0.80211 0.95373 0.83478 1.22302 1.03322 1.02363 0.93864 1.21008 0.81682 0.82557 0.86470 1.90768 1.37160 1.67905 1.47770 1.45823 1.49557 1.10003 1.30779 1.21080 0.97974 0.90910 0.88870 1.21697 1.01439 0.93262 0.99174 1.20674 0.96398 0.84235 0.96232 1.42529 1.56332 1.07117 1.32974 1.19629 1.21716 0.91718 1.05094 0.90835 1.25572 1.00665 0.99119 1.01302 1.69795 1.38187 1.16922 1.36900 0.85142 0.77019 0.78633 0.78984 1.21280 1.21962 1.19595 0.89566 0.89309 0.91489 0.83731 0.84548 0.92314 0.89721 0.91885 0.87797 0.91666 0.89200 0.74492 0.92243 0.91858 0.90392 0.90595 0.96252 0.96079 0.79151 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.86 71.23 0.70 -0.29 16 2 C 0.00 -0.02 6.89 41.08 0.28 0.26 16 3 C -0.21 -4.83 10.76 22.14 0.24 -4.59 16 4 C -0.23 -5.67 10.77 22.14 0.24 -5.43 16 5 C 0.03 0.72 5.75 41.08 0.24 0.95 16 6 C -0.08 -1.71 8.52 71.24 0.61 -1.10 16 7 N -0.43 -9.26 2.45 -477.20 -1.17 -10.43 16 8 C 0.11 1.78 3.17 44.24 0.14 1.92 16 9 H 0.15 1.53 6.72 -2.38 -0.02 1.51 16 10 C -0.16 -1.73 9.20 71.98 0.66 -1.07 16 11 C 0.50 10.83 6.32 87.65 0.55 11.38 16 12 O -0.56 -17.27 13.38 -3.01 -0.04 -17.31 16 13 N -0.71 -12.94 5.42 -463.07 -2.51 -15.45 16 14 C 0.14 3.25 5.67 86.38 0.49 3.74 16 15 C -0.12 -3.18 5.44 30.59 0.17 -3.01 16 16 C 0.15 5.76 6.26 86.38 0.54 6.30 16 17 N -0.75 -37.09 5.60 -343.46 -1.92 -39.02 16 18 C -0.25 -13.89 9.99 84.03 0.84 -13.06 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 21 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 22 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.73 7.23 -2.39 -0.02 0.71 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.06 1.56 7.24 -2.38 -0.02 1.54 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.28 4.85 -2.39 -0.01 1.27 16 34 H 0.10 0.66 7.43 -2.39 -0.02 0.64 16 35 H 0.06 0.89 5.42 -2.39 -0.01 0.88 16 36 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.42 4.91 7.83 -92.70 -0.73 4.19 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.38 19.47 7.67 -92.71 -0.71 18.76 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -73.86 362.96 2.39 -71.47 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.44 Total: 28.66 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 6.17 Total: -7.75 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.32 Total: -122.78 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.04 Total: -17.31 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.86 2.39 -71.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176937740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.507 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds