Wall clock time and date at job start Tue Mar 31 2020 07:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48506 * 109.47067 * 270.00082 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.47282 * 149.99832 * 3 2 1 7 7 C 1.38807 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00240 * 0.02562 * 7 2 1 9 9 N 1.36946 * 120.00140 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00189 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47070 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47070 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47092 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99935 * 180.02562 * 16 15 14 18 18 O 1.21269 * 119.99905 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99578 * 179.97438 * 17 16 15 20 20 C 1.50704 * 109.46762 * 179.97438 * 19 17 16 21 21 C 1.34845 * 125.88833 * 85.00052 * 20 19 17 22 22 C 1.40883 * 107.41891 * 180.02562 * 21 20 19 23 23 C 1.34854 * 107.41814 * 0.02562 * 22 21 20 24 24 N 1.36343 * 108.21624 * 0.26031 * 23 22 21 25 25 H 0.96994 * 125.63652 * 179.73195 * 24 23 22 26 26 H 0.97003 * 120.00255 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99501 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46781 * 59.99891 * 10 9 7 29 29 H 1.08998 * 109.47115 * 300.00186 * 10 9 7 30 30 H 1.08998 * 109.47187 * 60.00035 * 11 10 9 31 31 H 1.09002 * 109.46808 * 299.99848 * 11 10 9 32 32 H 1.08998 * 109.47090 * 59.99972 * 12 11 10 33 33 H 1.08998 * 109.47171 * 300.00126 * 12 11 10 34 34 H 1.08998 * 109.47187 * 60.00031 * 13 12 11 35 35 H 1.09002 * 109.46808 * 299.99843 * 13 12 11 36 36 H 1.08998 * 109.47090 * 59.99972 * 14 13 12 37 37 H 1.08998 * 109.47171 * 300.00126 * 14 13 12 38 38 H 1.09005 * 109.46419 * 59.99783 * 15 14 13 39 39 H 1.09002 * 109.46995 * 299.99971 * 15 14 13 40 40 H 0.97004 * 119.99681 * 0.02562 * 16 15 14 41 41 H 1.09007 * 109.46806 * 60.00106 * 19 17 16 42 42 H 1.08998 * 109.47448 * 300.00182 * 19 17 16 43 43 H 1.08010 * 126.29114 * 0.04613 * 21 20 19 44 44 H 1.08008 * 126.29481 * 179.97438 * 22 21 20 45 45 H 1.08002 * 125.89007 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 6 6.3814 -3.5162 0.0038 13 6 7.8857 -3.2366 0.0042 14 6 8.6507 -4.5616 0.0041 15 6 10.1550 -4.2820 0.0038 16 7 10.8875 -5.5507 0.0043 17 6 12.2353 -5.5506 0.0048 18 8 12.8416 -4.5004 0.0042 19 6 12.9887 -6.8558 0.0059 20 6 14.4704 -6.5804 0.0055 21 6 15.2302 -6.3413 1.0935 22 6 16.5510 -6.1351 0.6486 23 6 16.5478 -6.2555 -0.6946 24 7 15.2724 -6.5227 -1.0956 25 1 14.9838 -6.6530 -2.0124 26 1 -0.4851 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 3.8492 -3.0430 -0.8876 29 1 3.8485 -3.0418 0.8924 30 1 5.8791 -1.6192 0.8932 31 1 5.8804 -1.6200 -0.8868 32 1 6.1187 -4.0878 -0.8864 33 1 6.1175 -4.0878 0.8936 34 1 8.1487 -2.6648 0.8941 35 1 8.1492 -2.6652 -0.8859 36 1 8.3876 -5.1330 -0.8861 37 1 8.3872 -5.1334 0.8938 38 1 10.4183 -3.7104 0.8938 39 1 10.4181 -3.7104 -0.8862 40 1 10.4025 -6.3908 0.0044 41 1 12.7256 -7.4279 -0.8839 42 1 12.7251 -7.4268 0.8961 43 1 14.8891 -6.3134 2.1180 44 1 17.4083 -5.9194 1.2690 45 1 17.4066 -6.1529 -1.3415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180326340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:56 Heat of formation + Delta-G solvation = -5.124479 kcal Electronic energy + Delta-G solvation = -21473.142081 eV Core-core repulsion = 18104.745179 eV Total energy + Delta-G solvation = -3368.396902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49509 -39.78827 -36.94074 -35.54467 -34.06009 -32.56648 -31.77059 -31.22374 -30.33004 -27.70798 -26.41242 -24.00226 -22.11224 -21.48565 -20.97934 -20.85731 -20.73761 -20.31623 -18.00299 -17.50799 -17.33960 -16.38053 -16.06780 -15.59137 -14.66078 -14.63074 -14.48514 -13.99999 -13.96471 -13.76757 -13.60847 -13.30427 -13.18404 -12.75726 -12.69598 -12.55426 -12.42427 -12.04613 -11.78659 -11.62690 -11.46905 -11.02295 -10.86962 -10.79575 -10.42731 -10.37779 -10.18144 -10.05837 -9.56890 -9.43699 -9.12990 -8.86938 -8.35434 -7.20231 -5.75051 -3.10132 1.85549 2.27588 2.63996 2.90651 3.07511 3.39141 3.42285 3.46622 4.23747 4.46375 4.56624 4.57772 4.61205 4.68475 4.87580 4.88396 4.94304 5.14446 5.21229 5.25385 5.30738 5.41365 5.48850 5.54400 5.57854 5.64155 5.79380 5.85989 5.92875 6.01355 6.01508 6.06087 6.12005 6.21219 6.24150 6.37765 6.67384 6.79309 6.81311 6.83498 7.08577 7.26298 7.86379 8.02055 8.44385 9.24075 9.96716 10.17046 11.43521 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.050803 B = 0.001586 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.014339 B =17654.445461 C =17979.336589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.117 3.883 16 N -0.733 5.733 17 C 0.508 3.492 18 O -0.526 6.526 19 C -0.071 4.071 20 C 0.028 3.972 21 C -0.179 4.179 22 C -0.201 4.201 23 C -0.012 4.012 24 N -0.553 5.553 25 H 0.411 0.589 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.401 0.599 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.543 -18.382 -1.416 37.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.168 4.168 15 C -0.006 4.006 16 N -0.385 5.385 17 C 0.293 3.707 18 O -0.401 6.401 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.204 4.204 22 C -0.226 4.226 23 C -0.143 4.143 24 N -0.148 5.148 25 H 0.247 0.753 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 32.702 -17.700 -1.554 37.217 hybrid contribution 0.130 0.830 -0.414 0.936 sum 32.831 -16.871 -1.968 36.965 Atomic orbital electron populations 1.69705 1.05105 1.25797 1.57764 1.24679 0.95263 0.97240 1.02102 0.86521 0.79214 0.84884 0.77772 1.21091 1.21699 1.20334 1.19095 0.80764 0.94752 1.42834 0.89269 1.42749 1.04066 1.02420 1.91179 1.20636 0.88915 0.89162 0.98386 1.21784 0.96259 0.96972 1.01863 1.21489 0.93492 0.97992 1.02158 1.21521 0.95276 0.96112 1.02578 1.21823 0.92912 0.99282 1.02812 1.21438 0.91148 0.85469 1.02531 1.46058 1.06277 1.10039 1.76171 1.20602 0.82211 0.91425 0.76465 1.90760 1.67987 1.33332 1.48015 1.20121 0.89520 0.95996 1.05563 1.19473 0.91447 1.10551 0.87001 1.20639 0.93570 1.08514 0.97676 1.20887 0.97634 1.09982 0.94050 1.21800 0.87017 1.09138 0.96315 1.41869 1.07917 1.56731 1.08287 0.75304 0.93091 0.80718 0.95718 0.95757 0.92128 0.92154 0.91915 0.91877 0.91639 0.91703 0.91268 0.91172 0.91372 0.91517 0.76538 0.88381 0.86666 0.84985 0.84777 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.55 27.74 -169.99 -4.71 17.83 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.76 -18.70 5.41 -59.91 -0.32 -19.03 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 12 C -0.11 -1.27 5.21 -26.73 -0.14 -1.41 16 13 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 14 C -0.13 -0.92 5.33 -26.73 -0.14 -1.06 16 15 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 16 N -0.73 -4.78 5.56 -60.29 -0.33 -5.12 16 17 C 0.51 4.38 7.82 -10.98 -0.09 4.30 16 18 O -0.53 -7.15 16.03 5.57 0.09 -7.06 16 19 C -0.07 -0.38 6.24 -29.03 -0.18 -0.56 16 20 C 0.03 0.23 5.66 -81.79 -0.46 -0.23 16 21 C -0.18 -1.69 10.76 -39.79 -0.43 -2.11 16 22 C -0.20 -1.76 10.86 -39.78 -0.43 -2.19 16 23 C -0.01 -0.08 11.94 -16.75 -0.20 -0.28 16 24 N -0.55 -3.86 6.08 -9.12 -0.06 -3.92 16 25 H 0.41 1.75 8.96 -40.82 -0.37 1.38 16 26 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 27 H 0.36 8.63 5.53 -40.82 -0.23 8.40 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 1.38 8.47 -40.82 -0.35 1.04 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 45 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -37.31 375.28 -9.28 -46.59 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.72 Total: 4.37 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.66 Total: -10.23 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.06 Total: -57.16 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.09 Total: -7.06 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.31 -9.28 -46.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180326340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.467 kcal (2) G-P(sol) polarization free energy of solvation -37.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds