Wall clock time and date at job start Tue Mar 31 2020 07:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48506 * 109.47067 * 270.00082 * 3 2 1 5 5 H 1.48504 * 109.47237 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.47282 * 149.99832 * 3 2 1 7 7 C 1.38807 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00240 * 0.02562 * 7 2 1 9 9 N 1.36946 * 120.00140 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00189 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47070 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47070 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47092 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99935 * 180.02562 * 16 15 14 18 18 O 1.21269 * 119.99905 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99578 * 179.97438 * 17 16 15 20 20 C 1.50704 * 109.46762 * 179.97438 * 19 17 16 21 21 C 1.34845 * 125.88833 * 85.00052 * 20 19 17 22 22 C 1.40883 * 107.41891 * 180.02562 * 21 20 19 23 23 C 1.34854 * 107.41814 * 0.02562 * 22 21 20 24 24 N 1.36343 * 108.21624 * 0.26031 * 23 22 21 25 25 H 0.96994 * 125.63652 * 179.73195 * 24 23 22 26 26 H 0.97003 * 120.00255 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99501 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46781 * 59.99891 * 10 9 7 29 29 H 1.08998 * 109.47115 * 300.00186 * 10 9 7 30 30 H 1.08998 * 109.47187 * 60.00035 * 11 10 9 31 31 H 1.09002 * 109.46808 * 299.99848 * 11 10 9 32 32 H 1.08998 * 109.47090 * 59.99972 * 12 11 10 33 33 H 1.08998 * 109.47171 * 300.00126 * 12 11 10 34 34 H 1.08998 * 109.47187 * 60.00031 * 13 12 11 35 35 H 1.09002 * 109.46808 * 299.99843 * 13 12 11 36 36 H 1.08998 * 109.47090 * 59.99972 * 14 13 12 37 37 H 1.08998 * 109.47171 * 300.00126 * 14 13 12 38 38 H 1.09005 * 109.46419 * 59.99783 * 15 14 13 39 39 H 1.09002 * 109.46995 * 299.99971 * 15 14 13 40 40 H 0.97004 * 119.99681 * 0.02562 * 16 15 14 41 41 H 1.09007 * 109.46806 * 60.00106 * 19 17 16 42 42 H 1.08998 * 109.47448 * 300.00182 * 19 17 16 43 43 H 1.08010 * 126.29114 * 0.04613 * 21 20 19 44 44 H 1.08008 * 126.29481 * 179.97438 * 22 21 20 45 45 H 1.08002 * 125.89007 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 6 6.3814 -3.5162 0.0038 13 6 7.8857 -3.2366 0.0042 14 6 8.6507 -4.5616 0.0041 15 6 10.1550 -4.2820 0.0038 16 7 10.8875 -5.5507 0.0043 17 6 12.2353 -5.5506 0.0048 18 8 12.8416 -4.5004 0.0042 19 6 12.9887 -6.8558 0.0059 20 6 14.4704 -6.5804 0.0055 21 6 15.2302 -6.3413 1.0935 22 6 16.5510 -6.1351 0.6486 23 6 16.5478 -6.2555 -0.6946 24 7 15.2724 -6.5227 -1.0956 25 1 14.9838 -6.6530 -2.0124 26 1 -0.4851 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 3.8492 -3.0430 -0.8876 29 1 3.8485 -3.0418 0.8924 30 1 5.8791 -1.6192 0.8932 31 1 5.8804 -1.6200 -0.8868 32 1 6.1187 -4.0878 -0.8864 33 1 6.1175 -4.0878 0.8936 34 1 8.1487 -2.6648 0.8941 35 1 8.1492 -2.6652 -0.8859 36 1 8.3876 -5.1330 -0.8861 37 1 8.3872 -5.1334 0.8938 38 1 10.4183 -3.7104 0.8938 39 1 10.4181 -3.7104 -0.8862 40 1 10.4025 -6.3908 0.0044 41 1 12.7256 -7.4279 -0.8839 42 1 12.7251 -7.4268 0.8961 43 1 14.8891 -6.3134 2.1180 44 1 17.4083 -5.9194 1.2690 45 1 17.4066 -6.1529 -1.3415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180326340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:56 Heat of formation + Delta-G solvation = -31.544987 kcal Electronic energy + Delta-G solvation = -21474.287760 eV Core-core repulsion = 18104.745179 eV Total energy + Delta-G solvation = -3369.542581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04433 -40.45428 -37.97497 -36.81577 -35.29931 -33.74458 -32.94919 -31.79408 -31.66446 -28.73959 -27.24662 -25.40341 -23.50871 -22.24612 -22.20325 -21.62592 -21.37667 -20.91523 -19.61802 -18.53641 -17.96157 -17.08767 -16.76549 -16.55064 -16.40748 -15.79213 -15.53033 -15.15216 -14.89200 -14.61716 -14.38702 -14.26752 -14.17157 -14.07212 -13.49677 -13.41647 -13.27652 -13.12345 -13.01516 -12.68000 -12.49151 -12.45862 -12.08369 -11.88735 -11.86039 -11.80524 -11.53609 -11.33999 -10.97998 -10.93795 -10.08465 -9.71996 -9.31526 -8.92362 -8.05120 -5.38928 1.29141 1.36762 1.40356 1.48043 1.65328 2.04289 2.36780 2.46935 2.57744 3.26222 3.57230 3.74802 3.90409 4.02137 4.07371 4.22496 4.25353 4.27036 4.32623 4.46480 4.56532 4.59290 4.61951 4.66917 4.78028 4.85546 4.86873 4.97446 5.00166 5.04969 5.15489 5.28108 5.34434 5.35450 5.42286 5.47720 5.52936 5.55700 5.73398 6.08770 6.19499 6.22844 6.58431 6.82295 7.06092 7.29820 7.83093 8.02196 9.16442 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.050803 B = 0.001586 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.014339 B =17654.445461 C =17979.336589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.242 4.242 8 H 0.055 0.945 9 N -0.763 5.763 10 C 0.150 3.850 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.120 3.880 16 N -0.718 5.718 17 C 0.506 3.494 18 O -0.583 6.583 19 C -0.064 4.064 20 C 0.020 3.980 21 C -0.213 4.213 22 C -0.231 4.231 23 C -0.012 4.012 24 N -0.550 5.550 25 H 0.424 0.576 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.419 0.581 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.139 0.861 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.340 -19.197 -2.056 39.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.004 4.004 16 N -0.371 5.371 17 C 0.293 3.707 18 O -0.462 6.462 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.238 4.238 22 C -0.255 4.255 23 C -0.144 4.144 24 N -0.146 5.146 25 H 0.262 0.738 26 H 0.068 0.932 27 H 0.199 0.801 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.256 0.744 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.157 0.843 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 34.512 -18.588 -2.206 39.261 hybrid contribution -0.471 0.982 -0.216 1.111 sum 34.041 -17.605 -2.422 38.400 Atomic orbital electron populations 1.69890 1.07167 1.26807 1.59549 1.25561 0.96201 1.01440 1.02410 0.85353 0.78611 0.79273 0.78211 1.20263 1.21982 1.17667 1.19099 0.82918 0.93571 1.41695 0.92681 1.42807 1.02553 1.04517 1.91023 1.20873 0.91652 0.87127 0.97966 1.21706 0.93015 0.99193 1.01994 1.21423 0.94242 0.95894 1.02809 1.21457 0.93980 0.97324 1.02443 1.21695 0.91527 0.98278 1.04041 1.21299 0.91983 0.85920 1.01156 1.45929 1.05830 1.10453 1.74912 1.21167 0.82606 0.91779 0.75165 1.90741 1.69149 1.35522 1.50826 1.20215 0.87251 0.94581 1.08351 1.19864 0.92790 1.09807 0.86935 1.20890 0.94488 1.10089 0.98318 1.21172 0.97886 1.11272 0.95200 1.22264 0.87970 1.07877 0.96287 1.41959 1.07752 1.56002 1.08837 0.73793 0.93247 0.80114 0.95891 0.96029 0.92087 0.91934 0.91235 0.91311 0.91934 0.91857 0.89924 0.89994 0.92983 0.92875 0.74391 0.85009 0.84230 0.85250 0.84273 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.96 46.18 27.74 68.60 1.90 48.08 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 7 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 N -0.76 -36.87 5.41 -343.44 -1.86 -38.73 16 10 C 0.15 5.70 6.26 86.38 0.54 6.24 16 11 C -0.12 -3.36 5.33 30.59 0.16 -3.20 16 12 C -0.11 -2.08 5.21 30.59 0.16 -1.92 16 13 C -0.11 -1.80 5.21 30.59 0.16 -1.64 16 14 C -0.12 -1.31 5.33 30.60 0.16 -1.14 16 15 C 0.12 1.73 5.67 86.38 0.49 2.22 16 16 N -0.72 -7.72 5.56 -463.06 -2.57 -10.29 16 17 C 0.51 7.97 7.82 87.66 0.69 8.66 16 18 O -0.58 -15.81 16.03 -3.00 -0.05 -15.86 16 19 C -0.06 -0.53 6.24 29.10 0.18 -0.35 16 20 C 0.02 0.30 5.66 41.08 0.23 0.53 16 21 C -0.21 -4.05 10.76 22.14 0.24 -3.81 16 22 C -0.23 -4.09 10.86 22.14 0.24 -3.84 16 23 C -0.01 -0.17 11.94 83.21 0.99 0.82 16 24 N -0.55 -6.91 6.08 -182.76 -1.11 -8.02 16 25 H 0.42 2.79 8.96 -92.71 -0.83 1.96 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.37 16.73 5.53 -92.71 -0.51 16.21 16 28 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.42 1.45 8.47 -92.71 -0.79 0.67 16 41 H 0.13 0.21 8.14 -2.38 -0.02 0.19 16 42 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -83.02 375.28 1.01 -82.01 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -1.20 Total: 20.79 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.59 Total: -14.25 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.24 Total: -120.77 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.05 Total: -15.86 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -83.02 1.01 -82.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180326340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.468 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds