Wall clock time and date at job start Tue Mar 31 2020 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 111.00375 * 2 1 4 4 C 1.53032 * 109.52666 * 174.16125 * 3 2 1 5 5 C 1.53119 * 109.27997 * 59.17883 * 4 3 2 6 6 C 1.52996 * 109.52293 * 182.43909 * 5 4 3 7 7 C 1.50703 * 109.52152 * 62.25084 * 5 4 3 8 8 O 1.21281 * 119.99530 * 246.76145 * 7 5 4 9 9 N 1.34770 * 119.99907 * 66.75910 * 7 5 4 10 10 C 1.46504 * 120.00262 * 5.06909 * 9 7 5 11 11 C 1.50702 * 109.47035 * 89.42221 * 10 9 7 12 12 H 1.07999 * 120.00292 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99682 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00436 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99967 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46917 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99635 * 15 13 11 18 18 H 1.48497 * 109.47327 * 239.99849 * 15 13 11 19 19 C 1.46497 * 119.99914 * 185.06385 * 9 7 5 20 20 C 1.52999 * 109.47025 * 84.38376 * 19 9 7 21 21 C 1.47203 * 109.47123 * 182.74627 * 20 19 9 22 22 N 7.69509 * 93.14122 * 311.81309 * 2 1 3 23 23 C 1.53119 * 109.15856 * 302.34750 * 5 4 3 24 24 C 1.46846 * 111.00009 * 235.78718 * 2 1 3 25 25 H 1.09007 * 109.47120 * 184.20921 * 1 2 3 26 26 H 1.09000 * 109.47180 * 304.21064 * 1 2 3 27 27 H 1.08993 * 109.47169 * 64.21424 * 1 2 3 28 28 H 1.08996 * 109.45828 * 294.18083 * 3 2 1 29 29 H 1.09002 * 109.45820 * 54.14027 * 3 2 1 30 30 H 1.09000 * 109.50232 * 299.23607 * 4 3 2 31 31 H 1.08997 * 109.53417 * 179.14162 * 4 3 2 32 32 H 1.09002 * 109.47107 * 193.27109 * 6 5 4 33 33 H 1.09000 * 109.47144 * 313.27695 * 6 5 4 34 34 H 1.09010 * 109.46946 * 73.27633 * 6 5 4 35 35 H 1.09000 * 109.47121 * 209.42594 * 10 9 7 36 36 H 1.08999 * 109.46895 * 329.42784 * 10 9 7 37 37 H 0.97001 * 120.00380 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47289 * 204.38231 * 19 9 7 39 39 H 1.09004 * 109.47299 * 324.38027 * 19 9 7 40 40 H 1.09004 * 109.47113 * 302.74317 * 20 19 9 41 41 H 1.09002 * 109.47197 * 62.74722 * 20 19 9 42 42 H 1.09002 * 109.49992 * 297.70897 * 23 5 4 43 43 H 1.08996 * 109.53231 * 177.61805 * 23 5 4 44 44 H 1.08997 * 109.46332 * 305.85832 * 24 2 1 45 45 H 1.09003 * 109.46389 * 65.83408 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 5.6361 0.4449 -0.8405 7 6 3.8007 1.2261 -2.3163 8 8 3.0605 0.6963 -3.1177 9 7 4.3386 2.4311 -2.5898 10 6 5.3183 3.0210 -1.6741 11 6 6.7042 2.5797 -2.0688 12 1 6.8415 1.9257 -2.9172 13 6 7.7967 3.0110 -1.3468 14 7 7.6295 3.8069 -0.3134 15 14 9.5146 2.4646 -1.8365 16 1 9.4321 1.5783 -3.0251 17 1 10.3383 3.6560 -2.1643 18 1 10.1391 1.7259 -0.7098 19 6 3.9438 3.1511 -3.8030 20 6 2.6573 3.9347 -3.5351 21 6 2.2246 4.6052 -4.7721 22 7 1.8906 5.1226 -5.7267 23 6 3.5181 -0.8715 -1.0208 24 6 1.9952 -0.7708 -1.1337 25 1 -0.3634 -1.0250 0.0754 26 1 -0.3633 0.5778 0.8498 27 1 -0.3633 0.4470 -0.9253 28 1 1.7324 1.8607 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.7813 0.8567 1.0906 31 1 3.9104 2.3509 0.1314 32 1 6.0872 0.0912 -1.7676 33 1 6.0340 1.4296 -0.5952 34 1 5.8679 -0.2518 -0.0348 35 1 5.2547 4.1079 -1.7249 36 1 5.1084 2.6919 -0.6564 37 1 8.3982 4.1107 0.1943 38 1 4.7368 3.8418 -4.0900 39 1 3.7737 2.4380 -4.6097 40 1 1.8777 3.2500 -3.2012 41 1 2.8408 4.6812 -2.7623 42 1 3.7814 -1.3836 -0.0953 43 1 3.9098 -1.4309 -1.8703 44 1 1.5634 -1.7715 -1.1242 45 1 1.7326 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181985015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:52 Heat of formation + Delta-G solvation = 6.686138 kcal Electronic energy + Delta-G solvation = -25573.913079 eV Core-core repulsion = 22206.028324 eV Total energy + Delta-G solvation = -3367.884755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56061 -37.75214 -36.60329 -35.52348 -34.36699 -32.87510 -31.16291 -30.39566 -28.45135 -27.35929 -24.64268 -24.39800 -23.36538 -22.73052 -21.50329 -20.26972 -18.05518 -17.45824 -16.63594 -15.93679 -15.77791 -15.11733 -14.84705 -14.70027 -14.62666 -14.24571 -14.14908 -13.81432 -13.28639 -13.08638 -12.78408 -12.51212 -12.36107 -12.25940 -12.16871 -12.08717 -11.80172 -11.62897 -11.54378 -11.27803 -11.17115 -11.05596 -10.90985 -10.79748 -10.69540 -10.47316 -10.17639 -9.94333 -9.73460 -9.32612 -8.86159 -8.61438 -8.00603 -7.87186 -6.28268 -4.30260 2.80974 2.90463 3.16964 3.26232 3.27768 3.34297 3.67843 4.18322 4.26018 4.35749 5.02466 5.06384 5.10131 5.14700 5.26379 5.31131 5.36197 5.52552 5.59613 5.65635 5.66455 5.79402 5.84254 5.90694 6.00923 6.04110 6.13978 6.20029 6.22420 6.30641 6.41925 6.47943 6.51644 6.68320 6.72811 6.83581 7.07648 7.29133 7.33954 7.38569 7.57993 7.66633 7.67099 7.93785 8.19461 8.68606 8.90364 9.31980 10.77755 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.006965 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.000244 B = 4018.923342 C = 5686.332131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.071 4.071 6 C -0.164 4.164 7 C 0.531 3.469 8 O -0.569 6.569 9 N -0.594 5.594 10 C 0.217 3.783 11 C -0.529 4.529 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.889 5.889 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.281 1.281 19 C 0.125 3.875 20 C -0.045 4.045 21 C 0.221 3.779 22 N -0.450 5.450 23 C -0.087 4.087 24 C 0.041 3.959 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.133 0.867 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -4.274 3.191 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.149 4.149 5 C -0.074 4.074 6 C -0.220 4.220 7 C 0.320 3.680 8 O -0.450 6.450 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.568 4.568 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.207 1.207 19 C 0.000 4.000 20 C -0.086 4.086 21 C -0.097 4.097 22 N -0.127 5.127 23 C -0.126 4.126 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.987 -3.884 1.924 9.978 hybrid contribution 0.948 -0.053 -0.552 1.099 sum -8.038 -3.937 1.372 9.055 Atomic orbital electron populations 1.22296 0.88173 1.01643 1.00019 1.61981 1.06822 1.13807 1.44249 1.22117 0.96006 0.89123 1.00011 1.21898 0.93422 1.01621 0.98007 1.20705 0.98880 0.95281 0.92540 1.22780 0.91048 1.07244 1.00964 1.20551 0.78771 0.80642 0.88060 1.90515 1.38969 1.65475 1.49993 1.48172 1.42416 1.18295 1.23465 1.20115 0.85958 0.94485 0.89680 1.21445 0.90719 1.30087 1.14517 0.91848 1.24859 0.99127 0.94910 0.94918 1.69899 1.31193 1.33289 1.18340 0.86534 0.84217 0.78638 0.78773 1.19659 1.20916 1.20721 1.21095 0.93944 0.95851 0.89131 1.19787 1.00394 0.99475 0.88968 1.29116 0.92975 0.93045 0.94580 1.81179 1.09555 1.10393 1.11586 1.21426 0.94190 0.95197 1.01743 1.22401 0.95505 0.97637 0.93096 0.91828 0.91839 0.96022 0.95150 0.91075 0.90428 0.89158 0.92862 0.84870 0.94265 0.94651 0.91845 0.92412 0.89226 0.90395 0.87683 0.87096 0.91318 0.91538 0.92050 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 60.06 0.58 0.89 16 2 N -0.54 -7.56 4.91 -242.97 -1.19 -8.75 16 3 C 0.06 0.77 5.26 -3.84 -0.02 0.75 16 4 C -0.11 -1.69 4.63 -26.65 -0.12 -1.82 16 5 C -0.07 -1.18 0.50 -155.54 -0.08 -1.26 16 6 C -0.16 -2.98 6.83 37.16 0.25 -2.73 16 7 C 0.53 9.55 5.09 -10.99 -0.06 9.50 16 8 O -0.57 -11.09 13.25 5.56 0.07 -11.02 16 9 N -0.59 -10.47 2.47 -175.06 -0.43 -10.90 16 10 C 0.22 4.30 4.39 -5.19 -0.02 4.28 16 11 C -0.53 -11.98 6.08 -34.44 -0.21 -12.19 16 12 H 0.06 1.51 7.66 -52.49 -0.40 1.11 16 13 C 0.07 1.54 5.09 -17.82 -0.09 1.45 16 14 N -0.89 -21.96 13.29 55.43 0.74 -21.22 16 15 Si 0.89 19.16 29.54 -169.99 -5.02 14.14 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.13 1.94 5.35 -4.04 -0.02 1.92 16 20 C -0.04 -0.57 5.99 -29.52 -0.18 -0.74 16 21 C 0.22 3.15 15.43 -20.76 -0.32 2.83 16 22 N -0.45 -7.45 18.54 42.16 0.78 -6.67 16 23 C -0.09 -1.35 4.51 -26.65 -0.12 -1.47 16 24 C 0.04 0.61 5.19 -3.84 -0.02 0.59 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.45 7.31 -51.93 -0.38 0.07 16 29 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.43 5.30 -51.93 -0.28 1.16 16 32 H 0.05 1.03 7.58 -51.93 -0.39 0.64 16 33 H 0.13 2.74 3.16 -51.93 -0.16 2.57 16 34 H 0.04 0.65 8.06 -51.92 -0.42 0.23 16 35 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.06 1.27 2.86 -51.93 -0.15 1.12 16 37 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 38 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 39 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 40 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 43 H 0.07 1.07 8.12 -51.93 -0.42 0.64 16 44 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 45 H 0.07 1.19 5.49 -51.93 -0.28 0.91 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -26.02 347.87 -7.29 -33.31 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.05 Total: 3.88 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.43 Total: 1.99 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.11 Total: -47.55 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.02 -7.29 -33.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181985015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.996 kcal (2) G-P(sol) polarization free energy of solvation -26.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds