Wall clock time and date at job start Tue Mar 31 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 111.00375 * 2 1 4 4 C 1.53032 * 109.52666 * 174.16125 * 3 2 1 5 5 C 1.53119 * 109.27997 * 59.17883 * 4 3 2 6 6 C 1.52996 * 109.52293 * 182.43909 * 5 4 3 7 7 C 1.50703 * 109.52152 * 62.25084 * 5 4 3 8 8 O 1.21281 * 119.99530 * 246.76145 * 7 5 4 9 9 N 1.34770 * 119.99907 * 66.75910 * 7 5 4 10 10 C 1.46504 * 120.00262 * 5.06909 * 9 7 5 11 11 C 1.50702 * 109.47035 * 89.42221 * 10 9 7 12 12 H 1.07999 * 120.00292 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99682 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00436 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99967 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46917 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99635 * 15 13 11 18 18 H 1.48497 * 109.47327 * 239.99849 * 15 13 11 19 19 C 1.46497 * 119.99914 * 185.06385 * 9 7 5 20 20 C 1.52999 * 109.47025 * 84.38376 * 19 9 7 21 21 C 1.47203 * 109.47123 * 182.74627 * 20 19 9 22 22 N 7.69509 * 93.14122 * 311.81309 * 2 1 3 23 23 C 1.53119 * 109.15856 * 302.34750 * 5 4 3 24 24 C 1.46846 * 111.00009 * 235.78718 * 2 1 3 25 25 H 1.09007 * 109.47120 * 184.20921 * 1 2 3 26 26 H 1.09000 * 109.47180 * 304.21064 * 1 2 3 27 27 H 1.08993 * 109.47169 * 64.21424 * 1 2 3 28 28 H 1.08996 * 109.45828 * 294.18083 * 3 2 1 29 29 H 1.09002 * 109.45820 * 54.14027 * 3 2 1 30 30 H 1.09000 * 109.50232 * 299.23607 * 4 3 2 31 31 H 1.08997 * 109.53417 * 179.14162 * 4 3 2 32 32 H 1.09002 * 109.47107 * 193.27109 * 6 5 4 33 33 H 1.09000 * 109.47144 * 313.27695 * 6 5 4 34 34 H 1.09010 * 109.46946 * 73.27633 * 6 5 4 35 35 H 1.09000 * 109.47121 * 209.42594 * 10 9 7 36 36 H 1.08999 * 109.46895 * 329.42784 * 10 9 7 37 37 H 0.97001 * 120.00380 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47289 * 204.38231 * 19 9 7 39 39 H 1.09004 * 109.47299 * 324.38027 * 19 9 7 40 40 H 1.09004 * 109.47113 * 302.74317 * 20 19 9 41 41 H 1.09002 * 109.47197 * 62.74722 * 20 19 9 42 42 H 1.09002 * 109.49992 * 297.70897 * 23 5 4 43 43 H 1.08996 * 109.53231 * 177.61805 * 23 5 4 44 44 H 1.08997 * 109.46332 * 305.85832 * 24 2 1 45 45 H 1.09003 * 109.46389 * 65.83408 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 5.6361 0.4449 -0.8405 7 6 3.8007 1.2261 -2.3163 8 8 3.0605 0.6963 -3.1177 9 7 4.3386 2.4311 -2.5898 10 6 5.3183 3.0210 -1.6741 11 6 6.7042 2.5797 -2.0688 12 1 6.8415 1.9257 -2.9172 13 6 7.7967 3.0110 -1.3468 14 7 7.6295 3.8069 -0.3134 15 14 9.5146 2.4646 -1.8365 16 1 9.4321 1.5783 -3.0251 17 1 10.3383 3.6560 -2.1643 18 1 10.1391 1.7259 -0.7098 19 6 3.9438 3.1511 -3.8030 20 6 2.6573 3.9347 -3.5351 21 6 2.2246 4.6052 -4.7721 22 7 1.8906 5.1226 -5.7267 23 6 3.5181 -0.8715 -1.0208 24 6 1.9952 -0.7708 -1.1337 25 1 -0.3634 -1.0250 0.0754 26 1 -0.3633 0.5778 0.8498 27 1 -0.3633 0.4470 -0.9253 28 1 1.7324 1.8607 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.7813 0.8567 1.0906 31 1 3.9104 2.3509 0.1314 32 1 6.0872 0.0912 -1.7676 33 1 6.0340 1.4296 -0.5952 34 1 5.8679 -0.2518 -0.0348 35 1 5.2547 4.1079 -1.7249 36 1 5.1084 2.6919 -0.6564 37 1 8.3982 4.1107 0.1943 38 1 4.7368 3.8418 -4.0900 39 1 3.7737 2.4380 -4.6097 40 1 1.8777 3.2500 -3.2012 41 1 2.8408 4.6812 -2.7623 42 1 3.7814 -1.3836 -0.0953 43 1 3.9098 -1.4309 -1.8703 44 1 1.5634 -1.7715 -1.1242 45 1 1.7326 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181985015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:51 Heat of formation + Delta-G solvation = -7.535884 kcal Electronic energy + Delta-G solvation = -25574.529792 eV Core-core repulsion = 22206.028324 eV Total energy + Delta-G solvation = -3368.501468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92333 -38.97949 -37.84635 -37.03990 -35.60909 -34.55683 -32.46307 -31.59669 -29.72756 -28.94600 -25.91107 -25.57111 -25.00148 -23.98057 -22.77840 -21.51464 -19.47513 -18.73004 -18.31813 -17.29371 -17.16107 -16.45501 -16.15060 -15.97006 -15.91089 -15.61431 -15.32022 -15.08241 -14.63896 -14.40959 -14.32703 -13.86594 -13.70238 -13.53589 -13.41218 -13.20944 -13.08278 -13.01751 -12.90679 -12.75327 -12.60223 -12.41740 -12.38018 -12.12082 -11.97133 -11.87040 -11.66294 -11.52239 -11.12579 -10.73676 -10.48675 -10.21915 -9.43117 -9.08432 -8.10506 -6.14731 1.43444 1.50822 1.56691 1.59751 1.74102 1.88163 2.32067 2.50355 3.10247 3.16891 3.21849 3.70885 3.88557 3.95219 4.09250 4.12688 4.30593 4.35569 4.46802 4.52957 4.60621 4.67800 4.73601 4.81492 4.83144 4.91241 4.96767 4.99849 5.02735 5.06817 5.07099 5.16246 5.23332 5.27973 5.36774 5.43876 5.52265 5.76755 5.93257 6.01238 6.19529 6.23182 6.26301 6.50649 6.65904 6.92490 7.40769 7.52353 8.94283 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.006965 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.000244 B = 4018.923342 C = 5686.332131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.059 3.941 4 C -0.106 4.106 5 C -0.071 4.071 6 C -0.156 4.156 7 C 0.529 3.471 8 O -0.583 6.583 9 N -0.594 5.594 10 C 0.229 3.771 11 C -0.523 4.523 12 H 0.047 0.953 13 C 0.033 3.967 14 N -0.911 5.911 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.280 1.280 19 C 0.122 3.878 20 C -0.029 4.029 21 C 0.244 3.756 22 N -0.488 5.488 23 C -0.085 4.085 24 C 0.047 3.953 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.017 0.983 28 H 0.020 0.980 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 -4.641 4.291 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.074 4.074 6 C -0.212 4.212 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.323 5.323 10 C 0.109 3.891 11 C -0.562 4.562 12 H 0.065 0.935 13 C -0.168 4.168 14 N -0.551 5.551 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.206 1.206 19 C -0.003 4.003 20 C -0.070 4.070 21 C -0.073 4.073 22 N -0.166 5.166 23 C -0.123 4.123 24 C -0.081 4.081 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.974 -4.251 3.014 11.253 hybrid contribution 1.254 0.010 -0.917 1.553 sum -8.720 -4.241 2.097 9.921 Atomic orbital electron populations 1.22374 0.86529 1.02742 1.00488 1.62009 1.08322 1.13512 1.43383 1.22097 0.95041 0.89452 1.00323 1.21828 0.94391 1.00773 0.97404 1.20727 0.97850 0.96267 0.92517 1.22596 0.92140 1.06142 1.00360 1.20805 0.78422 0.80522 0.88404 1.90518 1.39691 1.65719 1.50611 1.48110 1.41992 1.18479 1.23715 1.19875 0.85094 0.93913 0.90245 1.21544 0.92186 1.29019 1.13447 0.93477 1.25268 1.01134 0.95272 0.95125 1.69945 1.31631 1.34385 1.19132 0.85893 0.81931 0.77993 0.78191 1.20229 1.21159 1.20557 1.21150 0.95324 0.95736 0.88089 1.19697 0.98930 0.99659 0.88696 1.29236 0.91882 0.92038 0.94177 1.81206 1.10859 1.11871 1.12683 1.21406 0.94809 0.94273 1.01849 1.22279 0.94952 0.98310 0.92517 0.90687 0.90201 0.96479 0.96172 0.89042 0.89783 0.89960 0.94827 0.86982 0.92821 0.95287 0.91397 0.92477 0.89340 0.91403 0.86901 0.84791 0.90160 0.92600 0.90705 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.59 127.69 1.22 1.76 16 2 N -0.55 -13.82 4.91 -922.62 -4.53 -18.35 16 3 C 0.06 1.50 5.26 86.32 0.45 1.95 16 4 C -0.11 -3.03 4.63 30.64 0.14 -2.89 16 5 C -0.07 -2.27 0.50 -52.85 -0.03 -2.30 16 6 C -0.16 -5.58 6.83 71.98 0.49 -5.09 16 7 C 0.53 18.71 5.09 87.66 0.45 19.16 16 8 O -0.58 -22.49 13.25 -3.03 -0.04 -22.53 16 9 N -0.59 -20.61 2.47 -826.15 -2.04 -22.65 16 10 C 0.23 8.97 4.39 85.63 0.38 9.35 16 11 C -0.52 -23.69 6.08 25.60 0.16 -23.53 16 12 H 0.05 2.26 7.66 -2.91 -0.02 2.24 16 13 C 0.03 1.54 5.09 84.65 0.43 1.97 16 14 N -0.91 -44.69 13.29 21.45 0.28 -44.41 16 15 Si 0.93 39.19 29.54 68.60 2.03 41.21 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.12 3.70 5.35 86.38 0.46 4.16 16 20 C -0.03 -0.68 5.99 28.79 0.17 -0.51 16 21 C 0.24 6.66 15.43 89.44 1.38 8.04 16 22 N -0.49 -15.83 18.54 20.01 0.37 -15.45 16 23 C -0.09 -2.53 4.51 30.65 0.14 -2.39 16 24 C 0.05 1.31 5.19 86.33 0.45 1.76 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.02 0.56 7.31 -2.39 -0.02 0.54 16 29 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 2.49 5.30 -2.39 -0.01 2.47 16 32 H 0.03 1.30 7.58 -2.39 -0.02 1.28 16 33 H 0.11 4.57 3.16 -2.39 -0.01 4.56 16 34 H 0.05 1.72 8.06 -2.38 -0.02 1.71 16 35 H 0.03 1.19 8.07 -2.39 -0.02 1.17 16 36 H 0.07 2.68 2.86 -2.39 -0.01 2.67 16 37 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 38 H 0.09 2.69 8.03 -2.39 -0.02 2.67 16 39 H 0.07 2.20 7.53 -2.39 -0.02 2.18 16 40 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 43 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 44 H 0.07 1.87 8.12 -2.39 -0.02 1.86 16 45 H 0.05 1.56 5.49 -2.39 -0.01 1.55 16 Total: -1.00 -54.34 347.87 3.35 -50.99 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.98 Total: 19.74 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.30 Total: 11.45 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.91 Total: -100.86 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.21 kcal Total: -54.34 3.35 -50.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181985015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.450 kcal (2) G-P(sol) polarization free energy of solvation -54.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds