Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47188 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47184 * 301.86683 * 3 2 1 5 5 N 1.46499 * 109.47479 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00136 * 270.00443 * 5 4 3 7 7 C 1.50696 * 109.47559 * 269.99591 * 6 5 4 8 8 H 1.08002 * 119.99386 * 359.97438 * 7 6 5 9 9 C 1.37867 * 120.00392 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00408 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99894 * 11 9 7 14 14 H 1.48494 * 109.47528 * 240.00111 * 11 9 7 15 15 C 1.34774 * 119.99899 * 90.00188 * 5 4 3 16 16 O 1.21592 * 120.00301 * 180.02562 * 15 5 4 17 17 N 1.34777 * 119.99902 * 0.02562 * 15 5 4 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 5 19 19 C 1.52999 * 109.46684 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47645 * 294.99878 * 19 18 17 21 21 C 1.52989 * 109.47252 * 179.97438 * 20 19 18 22 22 C 1.53009 * 109.47149 * 60.00403 * 21 20 19 23 23 C 1.52993 * 109.46793 * 300.00111 * 22 21 20 24 24 C 1.52989 * 109.47704 * 59.99856 * 23 22 21 25 25 H 1.09004 * 109.47664 * 181.87017 * 3 2 1 26 26 H 1.09001 * 109.47389 * 61.86711 * 3 2 1 27 27 H 1.09005 * 109.46685 * 60.00185 * 4 3 2 28 28 H 1.08999 * 109.47707 * 300.00171 * 4 3 2 29 29 H 1.09003 * 109.47296 * 29.99923 * 6 5 4 30 30 H 1.09010 * 109.46989 * 149.99851 * 6 5 4 31 31 H 0.96998 * 120.00607 * 180.02562 * 10 9 7 32 32 H 0.96995 * 120.00018 * 0.27633 * 17 15 5 33 33 H 1.09000 * 109.47212 * 300.00355 * 18 17 15 34 34 H 1.09001 * 109.46577 * 60.00430 * 18 17 15 35 35 H 1.09001 * 109.47317 * 55.00694 * 19 18 17 36 36 H 1.08993 * 109.47092 * 300.00720 * 20 19 18 37 37 H 1.09006 * 109.46455 * 60.00000 * 20 19 18 38 38 H 1.08993 * 109.47691 * 300.00392 * 21 20 19 39 39 H 1.08997 * 109.47364 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46851 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46642 * 59.99760 * 22 21 20 42 42 H 1.09001 * 109.47239 * 299.99283 * 23 22 21 43 43 H 1.09007 * 109.46997 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47464 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47240 * 59.99427 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1183 -0.7607 1.2251 5 7 4.5833 -0.7606 1.2248 6 6 5.3158 -1.8381 0.5550 7 6 5.5673 -2.9575 1.5319 8 1 5.2170 -2.8745 2.5502 9 6 6.2446 -4.0877 1.1260 10 7 6.6717 -4.1887 -0.1138 11 14 6.5558 -5.4757 2.3369 12 1 5.9781 -5.1191 3.6576 13 1 5.9177 -6.7202 1.8378 14 1 8.0182 -5.6913 2.4777 15 6 5.2572 0.2308 1.8408 16 8 6.4731 0.2312 1.8402 17 7 4.5833 1.2218 2.4575 18 6 5.3159 2.2992 3.1275 19 6 4.3216 3.2861 3.7425 20 6 3.5260 3.9696 2.6285 21 6 2.5314 4.9560 3.2436 22 6 3.2918 6.0118 4.0486 23 6 4.0874 5.3284 5.1625 24 6 5.0820 4.3420 4.5476 25 1 2.9709 1.0279 0.0335 26 1 2.9715 -0.4837 -0.9062 27 1 2.7554 -1.7880 1.1915 28 1 2.7548 -0.2764 2.1314 29 1 4.7266 -2.2121 -0.2824 30 1 6.2681 -1.4560 0.1872 31 1 7.1479 -4.9839 -0.3995 32 1 3.6134 1.2194 2.4614 33 1 5.9428 1.8781 3.9136 34 1 5.9423 2.8184 2.4021 35 1 3.6380 2.7504 4.4011 36 1 4.2096 4.5053 1.9700 37 1 2.9839 3.2174 2.0553 38 1 1.8478 4.4199 3.9019 39 1 1.9649 5.4432 2.4500 40 1 2.5831 6.7148 4.4864 41 1 3.9753 6.5479 3.3903 42 1 3.4038 4.7923 5.8209 43 1 4.6288 6.0807 5.7364 44 1 5.6491 3.8555 5.3412 45 1 5.7656 4.8781 3.8892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186872462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = -49.393611 kcal Electronic energy + Delta-G solvation = -23812.103278 eV Core-core repulsion = 20441.786723 eV Total energy + Delta-G solvation = -3370.316556 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16101 -39.51514 -38.00052 -36.70683 -35.77712 -34.72048 -32.15549 -32.10494 -31.52294 -29.08126 -26.58793 -25.32849 -24.39907 -23.39701 -22.08390 -20.95158 -20.38165 -19.09056 -18.53153 -18.29110 -17.36549 -16.49151 -16.38257 -16.09455 -15.86401 -15.48541 -15.11200 -15.00871 -14.85493 -14.64244 -14.47734 -14.26288 -13.69498 -13.64813 -13.52984 -13.13552 -13.03282 -12.96099 -12.94021 -12.70690 -12.59529 -12.49106 -12.15829 -11.94971 -11.92981 -11.83789 -11.62357 -11.28309 -11.06336 -10.88455 -10.85740 -10.55809 -10.03839 -9.31043 -8.14125 -6.26339 1.40661 1.43256 1.53576 1.68515 1.83005 1.95156 2.38211 2.48035 2.93033 3.16730 3.39851 3.73249 3.85527 3.90273 4.02874 4.11021 4.29397 4.40095 4.42729 4.49488 4.60001 4.63934 4.70458 4.78626 4.80122 4.86325 4.91935 5.02724 5.07683 5.12012 5.23471 5.32837 5.33435 5.35241 5.36760 5.44880 5.50859 5.63455 5.65473 5.71678 5.88702 6.17963 6.23237 6.59685 6.83664 7.25525 7.40820 7.84739 8.92121 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003970 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.147017 B = 7050.918435 C = 8383.698017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.245 3.755 3 C -0.038 4.038 4 C 0.118 3.882 5 N -0.613 5.613 6 C 0.276 3.724 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.270 1.270 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.697 3.303 16 O -0.638 6.638 17 N -0.733 5.733 18 C 0.144 3.856 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.112 4.112 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 19.037 7.103 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.008 4.008 5 N -0.347 5.347 6 C 0.154 3.846 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.211 1.211 15 C 0.399 3.601 16 O -0.519 6.519 17 N -0.392 5.392 18 C 0.020 3.980 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.150 4.150 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.944 18.918 6.976 22.482 hybrid contribution 0.665 -1.137 0.288 1.348 sum -9.279 17.781 7.264 21.332 Atomic orbital electron populations 1.81253 1.14212 1.10662 1.10132 1.29091 0.94858 0.91503 0.91789 1.19826 0.80224 1.05396 1.02465 1.21395 0.79467 1.02580 0.97308 1.47245 1.06067 1.24451 1.56930 1.18705 0.91231 0.82967 0.91664 1.21811 1.36195 1.02175 0.97537 0.93092 1.25707 0.95274 1.00916 0.96918 1.70025 1.39267 1.29600 1.17704 0.85508 0.77678 0.79181 0.79259 1.19423 1.19803 1.21102 1.16135 0.84901 0.80189 0.78888 1.90868 1.14380 1.79517 1.67118 1.45116 1.09921 1.25164 1.59031 1.21237 0.94499 0.86740 0.95547 1.21330 0.96581 0.95176 0.97433 1.21599 0.98024 0.98486 0.97033 1.21525 0.97592 0.96862 0.99561 1.21551 0.99056 0.97717 0.97439 1.21498 0.97878 0.98160 0.97747 1.21499 0.97976 0.96324 0.99199 0.85174 0.86032 0.89452 0.88677 0.94465 0.97852 0.92602 0.75626 0.93683 0.92794 0.90055 0.92000 0.91629 0.91812 0.91637 0.91508 0.92132 0.91827 0.91359 0.91840 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.22 18.54 20.00 0.37 -12.85 16 2 C 0.24 5.31 15.43 89.44 1.38 6.69 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.12 2.98 5.13 86.38 0.44 3.42 16 5 N -0.61 -22.90 2.46 -844.18 -2.07 -24.97 16 6 C 0.28 13.60 5.16 85.63 0.44 14.04 16 7 C -0.54 -29.59 9.38 25.60 0.24 -29.35 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.60 5.46 84.65 0.46 1.07 16 10 N -0.93 -54.09 13.29 21.44 0.28 -53.80 16 11 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 C 0.70 27.03 8.28 179.06 1.48 28.51 16 16 O -0.64 -32.26 15.92 -4.01 -0.06 -32.32 16 17 N -0.73 -19.46 5.15 -478.52 -2.46 -21.92 16 18 C 0.14 3.47 5.07 86.38 0.44 3.91 16 19 C -0.09 -1.39 2.22 -10.79 -0.02 -1.42 16 20 C -0.11 -1.61 5.08 30.59 0.16 -1.46 16 21 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 22 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 23 C -0.12 -1.39 5.92 30.59 0.18 -1.20 16 24 C -0.11 -1.64 5.21 30.59 0.16 -1.48 16 25 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 2.40 8.07 -2.38 -0.02 2.38 16 28 H 0.10 1.88 6.36 -2.39 -0.02 1.86 16 29 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 30 H 0.00 0.19 7.42 -2.38 -0.02 0.18 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.41 7.97 5.39 -92.71 -0.50 7.47 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.88 7.19 -2.38 -0.02 0.86 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.15 369.03 4.44 -68.71 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.47 Total: 11.20 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 5.90 Total: 19.75 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -3.88 Total: -113.54 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.06 Total: -32.32 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -73.15 4.44 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186872462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.316 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds