Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47041 * 90.05170 * 3 2 1 5 5 N 1.46498 * 109.46902 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00088 * 269.99737 * 5 4 3 7 7 C 1.50702 * 109.47075 * 270.00032 * 6 5 4 8 8 H 1.08000 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00214 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99981 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00180 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46910 * 89.99539 * 11 9 7 13 13 H 1.48495 * 109.46806 * 209.99587 * 11 9 7 14 14 H 1.48493 * 109.46982 * 329.99697 * 11 9 7 15 15 C 1.34779 * 120.00042 * 89.99561 * 5 4 3 16 16 O 1.21589 * 120.00097 * 179.97438 * 15 5 4 17 17 N 1.34777 * 120.00046 * 0.02562 * 15 5 4 18 18 C 1.46503 * 119.99965 * 180.02562 * 17 15 5 19 19 C 1.54065 * 108.87405 * 277.96907 * 18 17 15 20 20 C 1.54066 * 112.81762 * 197.50625 * 19 18 17 21 21 C 1.50470 * 112.49875 * 318.28617 * 20 19 18 22 22 C 1.54246 * 108.51998 * 94.14981 * 21 20 19 23 23 C 1.45537 * 112.40731 * 280.01038 * 22 21 20 24 24 C 1.50473 * 108.87630 * 154.99590 * 18 17 15 25 25 H 1.08999 * 109.47521 * 330.04410 * 3 2 1 26 26 H 1.08998 * 109.46787 * 210.04521 * 3 2 1 27 27 H 1.08992 * 109.47557 * 59.99672 * 4 3 2 28 28 H 1.08998 * 109.46800 * 299.99343 * 4 3 2 29 29 H 1.08994 * 109.46938 * 29.99828 * 6 5 4 30 30 H 1.08997 * 109.47265 * 150.00146 * 6 5 4 31 31 H 0.96996 * 119.99936 * 180.02562 * 10 9 7 32 32 H 0.96996 * 120.00099 * 359.97438 * 17 15 5 33 33 H 1.08996 * 108.77304 * 36.48071 * 18 17 15 34 34 H 1.09005 * 108.81720 * 318.37164 * 19 18 17 35 35 H 1.09004 * 108.81387 * 76.75411 * 19 18 17 36 36 H 1.08997 * 108.87949 * 197.51000 * 20 19 18 37 37 H 1.09001 * 108.87760 * 79.06417 * 20 19 18 38 38 H 1.09003 * 109.63195 * 334.43897 * 21 20 19 39 39 H 1.09001 * 109.62960 * 213.85940 * 21 20 19 40 40 H 1.09001 * 108.89247 * 40.76541 * 22 21 20 41 41 H 1.09004 * 108.89281 * 159.35535 * 22 21 20 42 42 H 1.09000 * 108.89458 * 182.68905 * 23 22 21 43 43 H 1.08998 * 108.89747 * 301.18352 * 23 22 21 44 44 H 1.09006 * 109.62936 * 95.21532 * 24 18 17 45 45 H 1.08998 * 109.78811 * 334.73047 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0022 -1.4426 5 7 4.5829 0.0035 -1.4425 6 6 5.3144 1.2728 -1.4416 7 6 5.5652 1.7091 -2.8621 8 1 5.2152 1.1013 -3.6834 9 6 6.2424 2.8834 -3.1133 10 7 6.6691 3.6233 -2.1131 11 14 6.5527 3.4246 -4.8741 12 1 5.4220 4.2675 -5.3394 13 1 7.8126 4.2080 -4.9364 14 1 6.6699 2.2284 -5.7461 15 6 5.2579 -1.1632 -1.4433 16 8 6.4738 -1.1621 -1.4437 17 7 4.5850 -2.3310 -1.4446 18 6 5.3187 -3.5991 -1.4449 19 6 5.7443 -3.9283 -2.8885 20 6 6.1321 -5.4077 -3.0744 21 6 6.9529 -5.9361 -1.9294 22 6 6.0044 -6.6091 -0.9162 23 6 5.3389 -5.6441 -0.0536 24 6 4.4450 -4.6670 -0.8445 25 1 2.9718 -0.8895 0.5131 26 1 2.9708 0.8904 0.5145 27 1 2.7542 0.8923 -1.9556 28 1 2.7551 -0.8876 -1.9571 29 1 4.7246 2.0315 -0.9273 30 1 6.2669 1.1429 -0.9279 31 1 7.1452 4.4497 -2.2898 32 1 3.6151 -2.3318 -1.4446 33 1 6.2120 -3.4876 -0.8305 34 1 4.9187 -3.6941 -3.5606 35 1 6.5995 -3.3064 -3.1533 36 1 6.7057 -5.5088 -3.9957 37 1 5.2227 -6.0025 -3.1604 38 1 7.4804 -5.1133 -1.4466 39 1 7.6710 -6.6674 -2.3004 40 1 5.2491 -7.1748 -1.4617 41 1 6.5803 -7.2963 -0.2962 42 1 4.7229 -6.1812 0.6676 43 1 6.0944 -5.0731 0.4862 44 1 3.9270 -5.2054 -1.6382 45 1 3.7157 -4.2132 -0.1736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191262073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = -18.945881 kcal Electronic energy + Delta-G solvation = -24200.822581 eV Core-core repulsion = 20831.826338 eV Total energy + Delta-G solvation = -3368.996243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00342 -38.52436 -36.83775 -35.22975 -34.33359 -32.77402 -32.36164 -30.82352 -30.23884 -27.03712 -24.96049 -24.31031 -23.89818 -22.50839 -20.82812 -19.43145 -19.17125 -17.76850 -17.17040 -16.46577 -16.29574 -15.52498 -15.12613 -14.69374 -14.58458 -14.31184 -14.16985 -13.88124 -13.67306 -13.40583 -13.11515 -13.08225 -12.52556 -12.42930 -12.31536 -12.12372 -11.90387 -11.77209 -11.38207 -11.20677 -10.99557 -10.94471 -10.86657 -10.79407 -10.56810 -10.44734 -10.42979 -10.21884 -10.14087 -9.66184 -9.23959 -8.61640 -8.42439 -7.71742 -6.03852 -4.07735 2.74133 2.81431 3.28681 3.31105 3.38206 3.43514 3.89474 4.04172 4.43524 4.51412 4.57515 4.68269 4.89036 5.03854 5.07171 5.11390 5.18730 5.19080 5.30808 5.32752 5.37992 5.44302 5.50683 5.69179 5.78939 5.82900 5.92040 5.95935 6.01814 6.07409 6.08991 6.15275 6.22363 6.27704 6.40245 6.50736 6.79531 6.99335 7.36166 7.51000 7.57982 7.74217 7.95555 8.24279 8.67323 8.93997 9.35692 9.58547 11.04065 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004861 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.226329 B = 5758.379778 C = 7545.704233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.122 3.878 5 N -0.613 5.613 6 C 0.260 3.740 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.702 3.298 16 O -0.578 6.578 17 N -0.757 5.757 18 C 0.168 3.832 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.125 4.125 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.388 0.612 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -17.676 3.517 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.005 4.005 5 N -0.348 5.348 6 C 0.141 3.859 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.403 3.597 16 O -0.455 6.455 17 N -0.415 5.415 18 C 0.062 3.938 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.163 4.163 25 H 0.124 0.876 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.222 0.778 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.389 -17.450 3.561 18.607 hybrid contribution 0.121 0.484 -1.062 1.173 sum -5.268 -16.966 2.500 17.940 Atomic orbital electron populations 1.81206 1.13059 1.09415 1.08731 1.29159 0.95145 0.92763 0.93043 1.19953 0.81186 1.06410 1.01815 1.21175 0.82844 1.03774 0.92734 1.47525 1.04078 1.06933 1.76214 1.19233 0.92391 0.76902 0.97418 1.21459 1.36396 1.06055 0.92507 0.92492 1.24902 0.95397 0.96462 0.97233 1.69920 1.38543 1.14330 1.30620 0.86537 0.77647 0.78572 0.84897 1.20726 1.21151 1.19966 1.15965 0.85570 0.80185 0.77980 1.90898 1.11546 1.85877 1.57171 1.45658 1.09010 1.04899 1.81976 1.20546 0.95283 0.81708 0.96246 1.22349 1.02079 0.95794 0.96685 1.21286 0.99612 0.95886 0.98323 1.21395 0.97829 1.00303 0.96459 1.20503 0.98678 0.98210 0.98086 1.20418 0.99042 0.97618 0.98228 1.21662 0.98143 0.96692 0.99793 0.87628 0.86442 0.88769 0.91426 0.94838 0.93551 0.92755 0.77761 0.89835 0.92225 0.91147 0.92404 0.92395 0.91106 0.92141 0.92307 0.92469 0.92180 0.91699 0.91232 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.54 18.54 42.15 0.78 -5.76 16 2 C 0.22 2.62 15.43 -20.76 -0.32 2.30 16 3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 4 C 0.12 1.65 5.13 -4.04 -0.02 1.63 16 5 N -0.61 -11.46 2.46 -180.81 -0.44 -11.91 16 6 C 0.26 6.25 5.16 -5.19 -0.03 6.22 16 7 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 11 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.70 13.42 8.19 -86.92 -0.71 12.71 16 16 O -0.58 -13.92 15.59 5.29 0.08 -13.83 16 17 N -0.76 -10.50 4.82 -59.37 -0.29 -10.79 16 18 C 0.17 2.09 1.94 -68.64 -0.13 1.96 16 19 C -0.13 -1.67 5.37 -25.62 -0.14 -1.80 16 20 C -0.11 -1.14 5.31 -27.44 -0.15 -1.28 16 21 C -0.12 -1.15 5.61 -27.34 -0.15 -1.30 16 22 C -0.12 -0.95 5.26 -29.60 -0.16 -1.10 16 23 C -0.12 -0.97 5.26 -29.60 -0.16 -1.13 16 24 C -0.12 -1.14 5.17 -27.34 -0.14 -1.28 16 25 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.39 4.30 6.21 -40.82 -0.25 4.04 16 33 H 0.08 1.23 6.08 -51.93 -0.32 0.92 16 34 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 38 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 7.47 -51.93 -0.39 0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 44 H 0.07 0.59 6.98 -51.93 -0.36 0.23 16 45 H 0.07 0.59 7.86 -51.93 -0.41 0.18 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -32.68 361.09 -8.71 -41.39 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.30 Total: 0.74 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.70 Total: 3.28 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.79 Total: -53.48 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.68 -8.71 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191262073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.445 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds