Wall clock time and date at job start Tue Mar 31 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47041 * 90.05170 * 3 2 1 5 5 N 1.46498 * 109.46902 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00088 * 269.99737 * 5 4 3 7 7 C 1.50702 * 109.47075 * 270.00032 * 6 5 4 8 8 H 1.08000 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00214 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99981 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00180 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46910 * 89.99539 * 11 9 7 13 13 H 1.48495 * 109.46806 * 209.99587 * 11 9 7 14 14 H 1.48493 * 109.46982 * 329.99697 * 11 9 7 15 15 C 1.34779 * 120.00042 * 89.99561 * 5 4 3 16 16 O 1.21589 * 120.00097 * 179.97438 * 15 5 4 17 17 N 1.34777 * 120.00046 * 0.02562 * 15 5 4 18 18 C 1.46503 * 119.99965 * 180.02562 * 17 15 5 19 19 C 1.54065 * 108.87405 * 277.96907 * 18 17 15 20 20 C 1.54066 * 112.81762 * 197.50625 * 19 18 17 21 21 C 1.50470 * 112.49875 * 318.28617 * 20 19 18 22 22 C 1.54246 * 108.51998 * 94.14981 * 21 20 19 23 23 C 1.45537 * 112.40731 * 280.01038 * 22 21 20 24 24 C 1.50473 * 108.87630 * 154.99590 * 18 17 15 25 25 H 1.08999 * 109.47521 * 330.04410 * 3 2 1 26 26 H 1.08998 * 109.46787 * 210.04521 * 3 2 1 27 27 H 1.08992 * 109.47557 * 59.99672 * 4 3 2 28 28 H 1.08998 * 109.46800 * 299.99343 * 4 3 2 29 29 H 1.08994 * 109.46938 * 29.99828 * 6 5 4 30 30 H 1.08997 * 109.47265 * 150.00146 * 6 5 4 31 31 H 0.96996 * 119.99936 * 180.02562 * 10 9 7 32 32 H 0.96996 * 120.00099 * 359.97438 * 17 15 5 33 33 H 1.08996 * 108.77304 * 36.48071 * 18 17 15 34 34 H 1.09005 * 108.81720 * 318.37164 * 19 18 17 35 35 H 1.09004 * 108.81387 * 76.75411 * 19 18 17 36 36 H 1.08997 * 108.87949 * 197.51000 * 20 19 18 37 37 H 1.09001 * 108.87760 * 79.06417 * 20 19 18 38 38 H 1.09003 * 109.63195 * 334.43897 * 21 20 19 39 39 H 1.09001 * 109.62960 * 213.85940 * 21 20 19 40 40 H 1.09001 * 108.89247 * 40.76541 * 22 21 20 41 41 H 1.09004 * 108.89281 * 159.35535 * 22 21 20 42 42 H 1.09000 * 108.89458 * 182.68905 * 23 22 21 43 43 H 1.08998 * 108.89747 * 301.18352 * 23 22 21 44 44 H 1.09006 * 109.62936 * 95.21532 * 24 18 17 45 45 H 1.08998 * 109.78811 * 334.73047 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0022 -1.4426 5 7 4.5829 0.0035 -1.4425 6 6 5.3144 1.2728 -1.4416 7 6 5.5652 1.7091 -2.8621 8 1 5.2152 1.1013 -3.6834 9 6 6.2424 2.8834 -3.1133 10 7 6.6691 3.6233 -2.1131 11 14 6.5527 3.4246 -4.8741 12 1 5.4220 4.2675 -5.3394 13 1 7.8126 4.2080 -4.9364 14 1 6.6699 2.2284 -5.7461 15 6 5.2579 -1.1632 -1.4433 16 8 6.4738 -1.1621 -1.4437 17 7 4.5850 -2.3310 -1.4446 18 6 5.3187 -3.5991 -1.4449 19 6 5.7443 -3.9283 -2.8885 20 6 6.1321 -5.4077 -3.0744 21 6 6.9529 -5.9361 -1.9294 22 6 6.0044 -6.6091 -0.9162 23 6 5.3389 -5.6441 -0.0536 24 6 4.4450 -4.6670 -0.8445 25 1 2.9718 -0.8895 0.5131 26 1 2.9708 0.8904 0.5145 27 1 2.7542 0.8923 -1.9556 28 1 2.7551 -0.8876 -1.9571 29 1 4.7246 2.0315 -0.9273 30 1 6.2669 1.1429 -0.9279 31 1 7.1452 4.4497 -2.2898 32 1 3.6151 -2.3318 -1.4446 33 1 6.2120 -3.4876 -0.8305 34 1 4.9187 -3.6941 -3.5606 35 1 6.5995 -3.3064 -3.1533 36 1 6.7057 -5.5088 -3.9957 37 1 5.2227 -6.0025 -3.1604 38 1 7.4804 -5.1133 -1.4466 39 1 7.6710 -6.6674 -2.3004 40 1 5.2491 -7.1748 -1.4617 41 1 6.5803 -7.2963 -0.2962 42 1 4.7229 -6.1812 0.6676 43 1 6.0944 -5.0731 0.4862 44 1 3.9270 -5.2054 -1.6382 45 1 3.7157 -4.2132 -0.1736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191262073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:42 Heat of formation + Delta-G solvation = -38.381199 kcal Electronic energy + Delta-G solvation = -24201.665360 eV Core-core repulsion = 20831.826338 eV Total energy + Delta-G solvation = -3369.839022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31716 -39.55979 -37.97096 -36.66295 -35.61756 -34.69289 -33.16742 -32.14833 -31.39256 -28.83096 -25.83036 -25.42408 -25.31997 -24.04375 -21.65228 -20.61677 -20.32861 -19.01037 -18.50283 -18.28302 -17.56433 -16.70158 -16.42260 -16.05427 -15.65026 -15.61639 -15.39073 -14.96363 -14.69549 -14.53054 -14.37818 -14.24218 -13.85861 -13.64672 -13.59021 -13.19547 -13.11671 -12.94685 -12.84669 -12.69991 -12.49579 -12.24219 -12.15938 -11.94399 -11.88339 -11.65337 -11.49759 -11.27644 -11.17536 -11.09965 -10.86473 -10.55729 -9.98156 -9.30593 -8.14752 -6.26894 1.39667 1.42239 1.51460 1.69008 1.83245 1.95363 2.39412 2.48289 2.93623 3.16003 3.39215 3.71733 3.87763 4.02170 4.11333 4.12578 4.23379 4.25847 4.37022 4.48832 4.50111 4.58864 4.64308 4.81012 4.91676 4.94619 5.00032 5.07563 5.15648 5.17422 5.28114 5.35210 5.36666 5.38163 5.40354 5.48736 5.56647 5.63183 5.65181 5.80235 5.89465 6.17554 6.26139 6.59984 6.82819 7.28535 7.40313 7.87963 8.91300 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004861 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.226329 B = 5758.379778 C = 7545.704233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.118 3.882 5 N -0.614 5.614 6 C 0.277 3.723 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.277 1.277 15 C 0.698 3.302 16 O -0.636 6.636 17 N -0.734 5.734 18 C 0.169 3.831 19 C -0.127 4.127 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 -19.687 3.242 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.155 3.845 7 C -0.576 4.576 8 H 0.068 0.932 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.202 1.202 15 C 0.399 3.601 16 O -0.517 6.517 17 N -0.393 5.393 18 C 0.064 3.936 19 C -0.166 4.166 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.155 4.155 25 H 0.150 0.850 26 H 0.138 0.862 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.434 -19.500 3.290 21.127 hybrid contribution 0.768 1.088 -0.970 1.648 sum -6.666 -18.412 2.320 19.719 Atomic orbital electron populations 1.81252 1.14255 1.10952 1.09945 1.29102 0.94863 0.91397 0.91801 1.19824 0.80167 1.07924 0.99916 1.21390 0.79475 1.04874 0.95004 1.47260 1.06066 1.05255 1.76234 1.18680 0.91200 0.79170 0.95445 1.21764 1.36249 1.05999 0.93636 0.93242 1.25695 0.95256 0.96706 1.01069 1.70023 1.39282 1.14768 1.32516 0.85576 0.77913 0.78060 0.80204 1.19119 1.20935 1.20213 1.16169 0.84965 0.81316 0.77606 1.90862 1.14378 1.86816 1.59615 1.45467 1.09817 1.03711 1.80303 1.20691 0.95159 0.81921 0.95859 1.22305 1.00259 0.97208 0.96829 1.21256 1.00730 0.93921 0.98541 1.21406 0.98296 0.99852 0.96627 1.20493 0.98726 0.98143 0.97827 1.20423 0.98854 0.97462 0.98469 1.21642 0.97791 0.95597 1.00468 0.85032 0.86150 0.89612 0.88568 0.94557 0.97950 0.92605 0.75613 0.92646 0.92022 0.95626 0.92534 0.90053 0.93619 0.91103 0.90696 0.91541 0.90103 0.93364 0.89460 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.30 18.54 20.00 0.37 -12.93 16 2 C 0.25 5.33 15.43 89.44 1.38 6.71 16 3 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 4 C 0.12 2.99 5.13 86.38 0.44 3.43 16 5 N -0.61 -23.08 2.46 -844.21 -2.07 -25.15 16 6 C 0.28 13.73 5.16 85.63 0.44 14.17 16 7 C -0.54 -29.73 9.39 25.60 0.24 -29.49 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.01 0.66 5.46 84.65 0.46 1.12 16 10 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 11 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.70 27.15 8.19 179.05 1.47 28.62 16 16 O -0.64 -32.27 15.59 -4.00 -0.06 -32.34 16 17 N -0.73 -19.61 4.82 -460.01 -2.22 -21.83 16 18 C 0.17 4.12 1.94 44.53 0.09 4.20 16 19 C -0.13 -3.26 5.37 31.31 0.17 -3.09 16 20 C -0.11 -2.00 5.31 30.14 0.16 -1.84 16 21 C -0.12 -2.21 5.61 30.20 0.17 -2.04 16 22 C -0.11 -1.53 5.26 28.74 0.15 -1.38 16 23 C -0.11 -1.63 5.26 28.74 0.15 -1.48 16 24 C -0.12 -1.79 5.17 30.20 0.16 -1.64 16 25 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 28 H 0.10 1.90 6.36 -2.39 -0.02 1.88 16 29 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 30 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 31 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.41 7.83 6.21 -92.71 -0.58 7.25 16 33 H 0.06 1.71 6.08 -2.39 -0.01 1.69 16 34 H 0.06 1.53 8.12 -2.38 -0.02 1.51 16 35 H 0.02 0.86 8.14 -2.38 -0.02 0.85 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.18 6.63 -2.39 -0.02 1.16 16 38 H 0.04 1.04 6.98 -2.39 -0.02 1.02 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.81 7.47 -2.39 -0.02 0.79 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.86 7.47 -2.39 -0.02 0.84 16 44 H 0.09 1.09 6.98 -2.38 -0.02 1.08 16 45 H 0.08 1.09 7.86 -2.39 -0.02 1.07 16 Total: -1.00 -74.83 361.09 4.39 -70.44 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.41 Total: 12.63 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.65 Total: 16.77 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.63 Total: -113.99 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.06 Total: -32.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -74.83 4.39 -70.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191262073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.064 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds