Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47459 * 2 1 4 4 C 1.46906 * 111.00267 * 299.34256 * 3 2 1 5 5 C 1.50703 * 109.47003 * 293.55926 * 4 3 2 6 6 H 1.07999 * 119.99586 * 354.96549 * 5 4 3 7 7 C 1.37868 * 120.00002 * 174.96688 * 5 4 3 8 8 N 1.31517 * 120.00173 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47249 * 59.99669 * 9 7 5 11 11 H 1.48499 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47131 * 299.99881 * 9 7 5 13 13 C 1.46896 * 110.99995 * 63.29465 * 3 2 1 14 14 C 1.50706 * 109.47193 * 66.04459 * 13 3 2 15 15 C 1.38197 * 119.97555 * 260.00242 * 14 13 3 16 16 C 1.38155 * 120.11036 * 180.02562 * 15 14 13 17 17 C 1.38788 * 120.05480 * 0.25817 * 16 15 14 18 18 O 1.35894 * 120.02817 * 179.74409 * 17 16 15 19 19 C 1.42901 * 117.00077 * 359.97438 * 18 17 16 20 20 C 1.38620 * 119.94388 * 359.48656 * 17 16 15 21 21 C 1.50697 * 120.05410 * 180.25402 * 20 17 16 22 22 C 1.38659 * 119.89048 * 0.51389 * 20 17 16 23 23 O 1.35889 * 120.02632 * 179.72485 * 22 20 17 24 24 C 1.42903 * 117.00028 * 270.01500 * 23 22 20 25 25 H 1.09000 * 109.46649 * 300.63726 * 1 2 3 26 26 H 1.08999 * 109.47237 * 60.63107 * 1 2 3 27 27 H 1.08997 * 109.47347 * 180.63820 * 1 2 3 28 28 H 1.09007 * 109.46682 * 240.00056 * 2 1 3 29 29 H 1.08997 * 109.46806 * 120.00629 * 2 1 3 30 30 H 1.09000 * 109.46996 * 53.55477 * 4 3 2 31 31 H 1.09002 * 109.47209 * 173.55678 * 4 3 2 32 32 H 0.97000 * 120.00499 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47368 * 306.04892 * 13 3 2 34 34 H 1.08994 * 109.47594 * 186.04678 * 13 3 2 35 35 H 1.08007 * 119.94308 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.97186 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47272 * 300.00573 * 19 18 17 38 38 H 1.09001 * 109.46757 * 60.00379 * 19 18 17 39 39 H 1.08995 * 109.47065 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.47346 * 270.25767 * 21 20 17 41 41 H 1.09001 * 109.47352 * 30.25362 * 21 20 17 42 42 H 1.08996 * 109.47237 * 150.25645 * 21 20 17 43 43 H 1.09003 * 109.46685 * 60.00302 * 24 23 22 44 44 H 1.09000 * 109.47579 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47308 * 300.00468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5617 2.1054 -1.1955 5 6 2.2046 1.5066 -2.4199 6 1 2.9465 0.7289 -2.3146 7 6 1.8458 1.9517 -3.6745 8 7 0.9420 2.8985 -3.8027 9 14 2.6432 1.2101 -5.1922 10 1 2.3645 -0.2479 -5.2355 11 1 2.0882 1.8561 -6.4087 12 1 4.1105 1.4321 -5.1389 13 6 1.6142 2.0867 1.2251 14 6 2.3019 1.4632 2.4123 15 6 1.6206 0.5653 3.2120 16 6 2.2482 -0.0075 4.3013 17 6 3.5634 0.3217 4.5983 18 8 4.1785 -0.2382 5.6729 19 6 3.4115 -1.1570 6.4537 20 6 4.2507 1.2179 3.7946 21 6 5.6806 1.5727 4.1114 22 6 3.6186 1.7915 2.7019 23 8 4.2879 2.6747 1.9154 24 6 4.2066 4.0553 2.2756 25 1 -0.3632 0.5237 0.8842 26 1 -0.3634 0.5040 -0.8956 27 1 -0.3634 -1.0276 0.0114 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.4779 2.0222 -1.2768 31 1 1.8405 3.1561 -1.1156 32 1 0.6892 3.2115 -4.6854 33 1 0.5341 2.0079 1.3484 34 1 1.8959 3.1371 1.1524 35 1 0.5957 0.3111 2.9850 36 1 1.7135 -0.7086 4.9250 37 1 2.5318 -0.6505 6.8507 38 1 3.0981 -1.9924 5.8275 39 1 4.0198 -1.5294 7.2779 40 1 5.7018 2.4324 4.7812 41 1 6.1672 0.7247 4.5932 42 1 6.2070 1.8178 3.1890 43 1 4.6091 4.1932 3.2791 44 1 4.7842 4.6501 1.5680 45 1 3.1649 4.3755 2.2547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204262703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -43.778772 kcal Electronic energy + Delta-G solvation = -24550.657715 eV Core-core repulsion = 21148.291886 eV Total energy + Delta-G solvation = -3402.365829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51159 -38.78904 -37.23577 -35.97197 -32.91348 -32.29794 -30.48190 -29.15913 -27.91988 -27.59832 -26.41821 -25.94642 -24.33573 -23.00079 -21.56176 -20.89093 -19.07040 -18.27418 -16.93716 -16.14164 -16.10299 -15.89713 -15.22512 -14.95565 -14.89414 -14.72638 -14.32074 -14.02869 -13.37732 -13.30987 -13.19180 -12.89587 -12.65774 -12.41748 -12.03008 -11.99262 -11.78207 -11.62433 -11.42333 -11.19344 -11.09498 -11.07727 -10.85157 -10.62609 -10.56007 -10.37852 -9.98457 -9.67338 -9.64305 -9.13780 -8.41566 -8.35727 -7.91188 -7.02377 -5.95313 -3.95313 1.32141 1.51643 3.15449 3.38628 3.41922 3.45992 3.62860 4.21751 4.50076 4.78823 4.92967 4.97973 4.99856 5.11146 5.24446 5.28084 5.39968 5.41151 5.47135 5.50961 5.60687 5.68368 5.74576 5.76710 5.81621 5.90931 5.95328 6.08684 6.19958 6.24658 6.32988 6.39816 6.48760 6.53169 6.64573 6.77809 6.83986 7.00900 7.35055 7.40801 7.51235 7.83014 7.90802 8.19957 8.32098 8.66384 9.13017 9.68316 11.15316 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.004149 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.777210 B = 6747.006864 C = 7280.351839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 N -0.520 5.520 4 C 0.191 3.809 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.097 3.903 14 C -0.111 4.111 15 C -0.071 4.071 16 C -0.212 4.212 17 C 0.127 3.873 18 O -0.316 6.316 19 C 0.029 3.971 20 C -0.141 4.141 21 C -0.098 4.098 22 C 0.154 3.846 23 O -0.314 6.314 24 C 0.039 3.961 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.002 0.998 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.094 0.906 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -3.618 19.961 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.244 5.244 4 C 0.066 3.934 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.031 4.031 14 C -0.112 4.112 15 C -0.090 4.090 16 C -0.231 4.231 17 C 0.082 3.918 18 O -0.230 6.230 19 C -0.066 4.066 20 C -0.142 4.142 21 C -0.155 4.155 22 C 0.110 3.890 23 O -0.230 6.230 24 C -0.055 4.055 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.113 0.887 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.667 -3.509 19.700 20.343 hybrid contribution -1.025 -0.437 -0.685 1.308 sum 2.642 -3.946 19.015 19.599 Atomic orbital electron populations 1.22399 0.99685 1.00717 1.01921 1.21952 0.91785 0.91726 1.01259 1.62332 1.59098 1.01618 1.01315 1.19771 0.94290 0.93566 0.85801 1.21119 1.22204 1.20554 0.89924 0.91997 1.24958 0.95317 0.95318 0.99004 1.69948 1.31946 1.28889 1.23404 0.86599 0.79744 0.79212 0.82081 1.20371 1.21490 1.20191 1.20856 0.95618 0.97851 0.88743 1.20242 0.93550 0.99690 0.97721 1.20730 0.99680 0.95039 0.93507 1.21111 0.94651 1.05654 1.01649 1.18504 0.91077 0.94239 0.88029 1.86025 1.41023 1.57773 1.38149 1.23009 0.96876 0.91908 0.94844 1.19420 0.97973 1.01059 0.95790 1.20460 0.91735 1.01338 1.01976 1.17981 0.89446 0.92569 0.89032 1.86109 1.70673 1.15484 1.50755 1.22930 1.01549 0.80772 1.00264 0.93902 0.91189 0.93616 0.90316 0.93041 0.98076 0.95856 0.93035 0.94887 0.90967 0.85726 0.85685 0.92831 0.92725 0.88538 0.92103 0.91462 0.90937 0.94179 0.88740 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.25 37.16 0.34 -3.12 16 2 C 0.06 1.24 5.63 -3.83 -0.02 1.22 16 3 N -0.52 -11.53 4.69 -237.51 -1.11 -12.65 16 4 C 0.19 4.99 4.50 -4.97 -0.02 4.96 16 5 C -0.50 -14.21 8.41 -34.44 -0.29 -14.50 16 6 H 0.06 1.78 7.33 -52.49 -0.38 1.39 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.10 1.83 4.56 -4.98 -0.02 1.80 16 14 C -0.11 -1.85 4.59 -104.44 -0.48 -2.33 16 15 C -0.07 -1.02 8.63 -39.63 -0.34 -1.36 16 16 C -0.21 -2.74 9.04 -39.41 -0.36 -3.09 16 17 C 0.13 1.75 6.66 -39.24 -0.26 1.49 16 18 O -0.32 -3.84 9.54 -19.41 -0.19 -4.03 16 19 C 0.03 0.23 9.81 101.05 0.99 1.22 16 20 C -0.14 -2.12 5.91 -104.33 -0.62 -2.74 16 21 C -0.10 -1.27 9.57 36.00 0.34 -0.92 16 22 C 0.15 2.58 5.67 -39.24 -0.22 2.36 16 23 O -0.31 -5.45 8.78 -19.39 -0.17 -5.62 16 24 C 0.04 0.52 10.84 101.05 1.10 1.62 16 25 H 0.04 0.71 6.02 -51.93 -0.31 0.40 16 26 H 0.07 1.49 6.31 -51.93 -0.33 1.16 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.75 6.97 -51.93 -0.36 1.38 16 29 H 0.05 0.96 6.46 -51.93 -0.34 0.63 16 30 H 0.00 0.04 6.01 -51.93 -0.31 -0.27 16 31 H 0.02 0.66 7.92 -51.93 -0.41 0.24 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.03 0.60 5.95 -51.93 -0.31 0.29 16 34 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 35 H 0.12 1.62 7.73 -52.48 -0.41 1.22 16 36 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 37 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.82 7.54 -51.93 -0.39 0.43 16 42 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.60 7.12 -51.93 -0.37 0.23 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.85 355.54 -7.37 -39.21 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.02 Total: -1.19 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 0.04 Total: -11.92 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.38 Total: -38.84 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.85 -7.37 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204262703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.564 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds