Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47459 * 2 1 4 4 C 1.46906 * 111.00267 * 299.34256 * 3 2 1 5 5 C 1.50703 * 109.47003 * 293.55926 * 4 3 2 6 6 H 1.07999 * 119.99586 * 354.96549 * 5 4 3 7 7 C 1.37868 * 120.00002 * 174.96688 * 5 4 3 8 8 N 1.31517 * 120.00173 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47249 * 59.99669 * 9 7 5 11 11 H 1.48499 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47131 * 299.99881 * 9 7 5 13 13 C 1.46896 * 110.99995 * 63.29465 * 3 2 1 14 14 C 1.50706 * 109.47193 * 66.04459 * 13 3 2 15 15 C 1.38197 * 119.97555 * 260.00242 * 14 13 3 16 16 C 1.38155 * 120.11036 * 180.02562 * 15 14 13 17 17 C 1.38788 * 120.05480 * 0.25817 * 16 15 14 18 18 O 1.35894 * 120.02817 * 179.74409 * 17 16 15 19 19 C 1.42901 * 117.00077 * 359.97438 * 18 17 16 20 20 C 1.38620 * 119.94388 * 359.48656 * 17 16 15 21 21 C 1.50697 * 120.05410 * 180.25402 * 20 17 16 22 22 C 1.38659 * 119.89048 * 0.51389 * 20 17 16 23 23 O 1.35889 * 120.02632 * 179.72485 * 22 20 17 24 24 C 1.42903 * 117.00028 * 270.01500 * 23 22 20 25 25 H 1.09000 * 109.46649 * 300.63726 * 1 2 3 26 26 H 1.08999 * 109.47237 * 60.63107 * 1 2 3 27 27 H 1.08997 * 109.47347 * 180.63820 * 1 2 3 28 28 H 1.09007 * 109.46682 * 240.00056 * 2 1 3 29 29 H 1.08997 * 109.46806 * 120.00629 * 2 1 3 30 30 H 1.09000 * 109.46996 * 53.55477 * 4 3 2 31 31 H 1.09002 * 109.47209 * 173.55678 * 4 3 2 32 32 H 0.97000 * 120.00499 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47368 * 306.04892 * 13 3 2 34 34 H 1.08994 * 109.47594 * 186.04678 * 13 3 2 35 35 H 1.08007 * 119.94308 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.97186 * 179.97438 * 16 15 14 37 37 H 1.09001 * 109.47272 * 300.00573 * 19 18 17 38 38 H 1.09001 * 109.46757 * 60.00379 * 19 18 17 39 39 H 1.08995 * 109.47065 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.47346 * 270.25767 * 21 20 17 41 41 H 1.09001 * 109.47352 * 30.25362 * 21 20 17 42 42 H 1.08996 * 109.47237 * 150.25645 * 21 20 17 43 43 H 1.09003 * 109.46685 * 60.00302 * 24 23 22 44 44 H 1.09000 * 109.47579 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47308 * 300.00468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5617 2.1054 -1.1955 5 6 2.2046 1.5066 -2.4199 6 1 2.9465 0.7289 -2.3146 7 6 1.8458 1.9517 -3.6745 8 7 0.9420 2.8985 -3.8027 9 14 2.6432 1.2101 -5.1922 10 1 2.3645 -0.2479 -5.2355 11 1 2.0882 1.8561 -6.4087 12 1 4.1105 1.4321 -5.1389 13 6 1.6142 2.0867 1.2251 14 6 2.3019 1.4632 2.4123 15 6 1.6206 0.5653 3.2120 16 6 2.2482 -0.0075 4.3013 17 6 3.5634 0.3217 4.5983 18 8 4.1785 -0.2382 5.6729 19 6 3.4115 -1.1570 6.4537 20 6 4.2507 1.2179 3.7946 21 6 5.6806 1.5727 4.1114 22 6 3.6186 1.7915 2.7019 23 8 4.2879 2.6747 1.9154 24 6 4.2066 4.0553 2.2756 25 1 -0.3632 0.5237 0.8842 26 1 -0.3634 0.5040 -0.8956 27 1 -0.3634 -1.0276 0.0114 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.4779 2.0222 -1.2768 31 1 1.8405 3.1561 -1.1156 32 1 0.6892 3.2115 -4.6854 33 1 0.5341 2.0079 1.3484 34 1 1.8959 3.1371 1.1524 35 1 0.5957 0.3111 2.9850 36 1 1.7135 -0.7086 4.9250 37 1 2.5318 -0.6505 6.8507 38 1 3.0981 -1.9924 5.8275 39 1 4.0198 -1.5294 7.2779 40 1 5.7018 2.4324 4.7812 41 1 6.1672 0.7247 4.5932 42 1 6.2070 1.8178 3.1890 43 1 4.6091 4.1932 3.2791 44 1 4.7842 4.6501 1.5680 45 1 3.1649 4.3755 2.2547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204262703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -64.171678 kcal Electronic energy + Delta-G solvation = -24551.542018 eV Core-core repulsion = 21148.291886 eV Total energy + Delta-G solvation = -3403.250132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60415 -39.85711 -38.80001 -37.15622 -34.78627 -33.69836 -31.76725 -30.82741 -29.15941 -28.48729 -27.98848 -26.99132 -25.80922 -24.91541 -22.64462 -22.24831 -20.66971 -19.27759 -18.33346 -18.04062 -17.16890 -16.92033 -16.72971 -16.45351 -16.15226 -15.96324 -15.84471 -15.54371 -14.65413 -14.47497 -14.38914 -14.21365 -14.05016 -13.68339 -13.39077 -13.13056 -13.05457 -12.97029 -12.87449 -12.74173 -12.60439 -12.52674 -12.41724 -12.24629 -11.88545 -11.77918 -11.69212 -11.42560 -11.24274 -10.81369 -10.56457 -9.51725 -9.04071 -8.77630 -8.15667 -6.24702 0.22803 0.38409 1.40652 1.43809 1.51597 2.26985 2.41918 2.55044 3.10490 3.16033 3.54222 3.79275 3.89302 4.00094 4.23003 4.28876 4.34493 4.41154 4.43946 4.46015 4.48405 4.51162 4.55124 4.66278 4.68310 4.72892 4.79319 4.79886 4.84855 4.86370 4.98820 5.02448 5.25051 5.28784 5.33825 5.35713 5.42148 5.52970 5.55310 5.67146 5.71907 6.13068 6.42916 6.44947 6.67106 6.75055 6.91908 7.44202 8.94162 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.004149 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.777210 B = 6747.006864 C = 7280.351839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.065 3.935 3 N -0.532 5.532 4 C 0.209 3.791 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.105 3.895 14 C -0.135 4.135 15 C -0.069 4.069 16 C -0.205 4.205 17 C 0.131 3.869 18 O -0.326 6.326 19 C 0.017 3.983 20 C -0.158 4.158 21 C -0.093 4.093 22 C 0.139 3.861 23 O -0.344 6.344 24 C 0.036 3.964 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.072 0.928 30 H -0.018 1.018 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -5.451 21.821 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.063 4.063 3 N -0.256 5.256 4 C 0.083 3.917 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.197 1.197 13 C -0.023 4.023 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.223 4.223 17 C 0.085 3.915 18 O -0.240 6.240 19 C -0.077 4.077 20 C -0.159 4.159 21 C -0.149 4.149 22 C 0.094 3.906 23 O -0.261 6.261 24 C -0.058 4.058 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.000 1.000 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.837 -5.355 21.591 22.574 hybrid contribution -1.054 0.107 -1.100 1.527 sum 2.784 -5.249 20.491 21.335 Atomic orbital electron populations 1.22259 0.98093 1.02237 1.00940 1.21906 0.93073 0.90402 1.00946 1.62197 1.59683 1.02461 1.01213 1.19376 0.92806 0.92198 0.87362 1.21376 1.22263 1.20546 0.91243 0.92721 1.25809 0.95746 0.95608 1.02151 1.70069 1.33109 1.30019 1.24274 0.85534 0.78764 0.78750 0.78158 1.19344 1.20698 1.19712 1.20754 0.96183 0.97085 0.88246 1.20089 0.94021 1.01668 0.97817 1.20895 1.00230 0.94192 0.93395 1.21406 0.94347 1.05393 1.01165 1.18623 0.91307 0.93430 0.88110 1.86027 1.42010 1.58288 1.37664 1.23367 0.97728 0.91479 0.95110 1.19619 0.98922 1.01591 0.95761 1.20429 0.90627 1.02104 1.01761 1.18178 0.89669 0.92991 0.89728 1.86042 1.71062 1.16990 1.51964 1.23072 1.01612 0.79343 1.01744 0.92098 0.94771 0.90847 0.92836 0.90943 1.00023 0.98908 0.92808 0.94242 0.92406 0.84209 0.82388 0.91478 0.91889 0.86197 0.90705 0.90867 0.91997 0.91977 0.88035 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.38 9.25 71.98 0.67 -5.72 16 2 C 0.06 2.63 5.63 86.30 0.49 3.12 16 3 N -0.53 -24.28 4.69 -905.36 -4.25 -28.53 16 4 C 0.21 11.44 4.50 85.56 0.38 11.83 16 5 C -0.52 -30.30 8.41 25.60 0.22 -30.08 16 6 H 0.05 3.22 7.33 -2.91 -0.02 3.20 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -57.12 13.29 21.44 0.28 -56.83 16 9 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.10 4.02 4.56 85.56 0.39 4.41 16 14 C -0.13 -4.44 4.59 -19.75 -0.09 -4.53 16 15 C -0.07 -1.82 8.63 22.24 0.19 -1.63 16 16 C -0.20 -4.63 9.04 22.38 0.20 -4.42 16 17 C 0.13 3.31 6.66 22.49 0.15 3.46 16 18 O -0.33 -6.94 9.54 -92.35 -0.88 -7.82 16 19 C 0.02 0.21 9.81 113.37 1.11 1.32 16 20 C -0.16 -4.56 5.91 -19.67 -0.12 -4.68 16 21 C -0.09 -2.28 9.57 71.23 0.68 -1.60 16 22 C 0.14 4.62 5.67 22.49 0.13 4.74 16 23 O -0.34 -12.23 8.78 -92.30 -0.81 -13.04 16 24 C 0.04 0.98 10.84 113.37 1.23 2.21 16 25 H 0.06 1.95 6.02 -2.39 -0.01 1.94 16 26 H 0.03 1.47 6.31 -2.39 -0.02 1.46 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 2.41 6.97 -2.38 -0.02 2.40 16 29 H 0.07 2.63 6.46 -2.39 -0.02 2.61 16 30 H -0.02 -1.03 6.01 -2.39 -0.01 -1.05 16 31 H -0.01 -0.43 7.92 -2.39 -0.02 -0.45 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 33 H 0.04 1.44 5.95 -2.39 -0.01 1.42 16 34 H 0.06 2.33 6.34 -2.39 -0.02 2.32 16 35 H 0.14 3.21 7.73 -2.91 -0.02 3.19 16 36 H 0.16 2.46 6.29 -2.91 -0.02 2.44 16 37 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 38 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.68 7.54 -2.39 -0.02 1.66 16 42 H 0.06 1.63 7.53 -2.39 -0.02 1.62 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.04 1.12 7.12 -2.39 -0.02 1.10 16 Total: -1.00 -70.47 355.54 3.44 -67.03 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.98 Total: 12.32 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 6.09 Total: -20.85 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -3.96 Total: -85.36 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.69 Total: -20.86 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.47 3.44 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204262703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.859 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds