Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47030 * 2 1 4 4 C 1.34235 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99644 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46999 * 174.29480 * 6 4 3 8 8 C 1.46901 * 110.99833 * 163.86974 * 7 6 4 9 9 C 1.50707 * 109.47377 * 288.23998 * 8 7 6 10 10 H 1.07992 * 119.99768 * 355.78028 * 9 8 7 11 11 C 1.37875 * 119.99606 * 175.77857 * 9 8 7 12 12 N 1.31512 * 120.00430 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99486 * 180.27738 * 11 9 8 14 14 H 1.48502 * 109.46979 * 179.72229 * 13 11 9 15 15 H 1.48500 * 109.47084 * 299.72250 * 13 11 9 16 16 H 1.48500 * 109.46989 * 59.72372 * 13 11 9 17 17 C 1.46897 * 111.00258 * 287.82778 * 7 6 4 18 18 C 1.53001 * 109.46992 * 169.99854 * 17 7 6 19 19 H 1.09001 * 110.51739 * 56.33607 * 18 17 7 20 20 C 1.54828 * 110.58442 * 293.54362 * 18 17 7 21 21 C 1.56195 * 103.68844 * 241.45462 * 20 18 17 22 22 H 1.08996 * 116.29371 * 163.13605 * 21 20 18 23 23 C 1.53359 * 104.07390 * 292.47827 * 21 20 18 24 24 C 1.31800 * 108.42724 * 70.08262 * 23 21 20 25 25 C 1.56201 * 110.57965 * 179.28104 * 18 17 7 26 26 H 1.08998 * 116.29168 * 314.53704 * 25 18 17 27 27 C 1.57260 * 100.39695 * 82.22523 * 25 18 17 28 28 H 1.08997 * 109.47685 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47865 * 300.00257 * 1 2 3 30 30 H 1.09007 * 109.46995 * 60.00601 * 1 2 3 31 31 H 1.09000 * 109.47124 * 239.99719 * 2 1 3 32 32 H 1.09002 * 109.46803 * 119.99854 * 2 1 3 33 33 H 1.09000 * 109.47559 * 54.29832 * 6 4 3 34 34 H 1.08998 * 109.47407 * 294.29554 * 6 4 3 35 35 H 1.09007 * 109.46979 * 168.24084 * 8 7 6 36 36 H 1.08996 * 109.47120 * 48.24381 * 8 7 6 37 37 H 0.96998 * 119.99708 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.46827 * 289.99432 * 17 7 6 39 39 H 1.08996 * 109.46753 * 49.99906 * 17 7 6 40 40 H 1.09010 * 110.58048 * 0.02562 * 20 18 17 41 41 H 1.09002 * 110.57966 * 122.74914 * 20 18 17 42 42 H 1.08003 * 125.78572 * 250.08608 * 23 21 20 43 43 H 1.07999 * 125.78685 * 179.97438 * 24 23 21 44 44 H 1.08995 * 112.52342 * 300.92224 * 27 25 18 45 45 H 1.08999 * 112.52081 * 173.04927 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3813 2.8632 0.1384 8 6 6.0108 4.1367 -0.2355 9 6 5.9252 4.3201 -1.7289 10 1 5.5122 3.5363 -2.3463 11 6 6.3740 5.4887 -2.3067 12 7 6.8774 6.4431 -1.5548 13 14 6.2607 5.7192 -4.1570 14 1 6.7999 7.0534 -4.5236 15 1 7.0515 4.6619 -4.8369 16 1 4.8408 5.6254 -4.5815 17 6 5.7616 2.4680 1.5012 18 6 7.2596 2.1597 1.5434 19 1 7.8359 3.0160 1.1931 20 6 7.5810 0.9039 0.6967 21 6 8.1709 -0.1017 1.7361 22 1 8.2068 -1.1472 1.4299 23 6 9.5042 0.5314 2.1524 24 6 9.2486 1.6072 2.8696 25 6 7.6961 1.7535 2.9872 26 1 7.3193 2.3761 3.7986 27 6 7.2853 0.2354 2.9913 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5050 3.5029 0.8340 34 1 3.6693 3.4342 -0.9370 35 1 7.0571 4.1283 0.0701 36 1 5.4937 4.9574 0.2616 37 1 7.1928 7.2653 -1.9614 38 1 5.5385 3.2818 2.1910 39 1 5.1996 1.5805 1.7922 40 1 6.6729 0.5022 0.2470 41 1 8.3164 1.1386 -0.0729 42 1 10.4861 0.1588 1.9005 43 1 9.9856 2.2654 3.3055 44 1 6.2217 0.0902 2.8029 45 1 7.6186 -0.2848 3.8893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207631282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -48.773101 kcal Electronic energy + Delta-G solvation = -24501.066894 eV Core-core repulsion = 21098.484494 eV Total energy + Delta-G solvation = -3402.582400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35149 -39.90416 -36.92568 -35.68408 -32.62597 -31.77898 -30.95519 -28.66819 -28.11501 -27.53679 -26.15216 -23.75468 -23.07305 -21.54423 -20.44635 -19.92334 -19.02837 -17.59295 -17.30432 -16.56148 -16.32986 -16.03273 -15.92684 -15.14160 -14.67968 -14.26344 -13.96882 -13.52593 -13.37374 -12.97365 -12.75087 -12.40298 -12.23591 -11.99179 -11.92734 -11.59073 -11.49488 -11.40677 -11.26921 -10.94502 -10.91220 -10.81293 -10.68889 -10.64855 -10.34290 -10.27394 -10.07601 -9.97470 -9.78908 -9.44542 -9.23281 -8.62750 -8.43742 -7.33268 -6.04813 -4.06640 2.53467 2.71591 2.95508 3.32887 3.37158 3.40597 4.40394 4.69982 4.80451 4.87762 4.92539 4.96604 5.13611 5.19014 5.24890 5.27812 5.30306 5.59567 5.61228 5.66407 5.72309 5.73779 5.78848 5.87578 5.90338 5.92850 6.01203 6.07114 6.11551 6.19057 6.34755 6.43938 6.46680 6.52996 6.65279 6.74458 6.90436 7.04391 7.16211 7.25434 7.28057 7.78207 7.96624 8.10193 8.29818 8.48656 9.01260 9.58076 11.05307 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008001 B = 0.007029 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.858873 B = 3982.319803 C = 6848.232747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.459 3.541 5 O -0.492 6.492 6 C 0.072 3.928 7 N -0.519 5.519 8 C 0.193 3.807 9 C -0.511 4.511 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.288 1.288 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.065 3.935 18 C -0.078 4.078 19 H 0.081 0.919 20 C -0.100 4.100 21 C -0.082 4.082 22 H 0.090 0.910 23 C -0.169 4.169 24 C -0.167 4.167 25 C -0.074 4.074 26 H 0.094 0.906 27 C -0.118 4.118 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.040 0.960 36 H -0.003 1.003 37 H 0.262 0.738 38 H 0.020 0.980 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.074 0.926 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -11.405 8.277 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.377 6.377 6 C -0.057 4.057 7 N -0.244 5.244 8 C 0.069 3.931 9 C -0.549 4.549 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.214 1.214 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.063 4.063 18 C -0.096 4.096 19 H 0.099 0.901 20 C -0.137 4.137 21 C -0.100 4.100 22 H 0.109 0.891 23 C -0.187 4.187 24 C -0.185 4.185 25 C -0.093 4.093 26 H 0.112 0.888 27 C -0.156 4.156 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.058 0.942 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.911 -11.885 7.920 15.103 hybrid contribution -0.096 0.790 -0.546 0.966 sum -5.008 -11.095 7.374 14.232 Atomic orbital electron populations 1.21788 0.93114 1.02525 1.03409 1.22883 0.94949 0.81146 1.02222 1.86528 1.25687 1.31559 1.84771 1.24254 0.79732 0.93669 0.72264 1.90594 1.60016 1.42905 1.44186 1.21531 0.90771 0.88485 1.04949 1.61713 1.03900 1.36076 1.22711 1.19834 0.94682 0.82214 0.96355 1.21125 1.40939 1.01004 0.91845 0.91906 1.24961 0.95334 0.95815 0.98229 1.69940 1.41710 1.06692 1.35304 0.86592 0.78419 0.77153 0.85454 1.21375 1.20181 1.20243 1.22107 0.95803 0.98613 0.89807 1.22288 0.95347 0.98818 0.93183 0.90081 1.22619 1.01270 0.93740 0.96090 1.22943 0.92451 0.98258 0.96346 0.89148 1.24039 0.97828 0.97974 0.98816 1.24618 0.96334 0.97554 1.00026 1.23498 0.92291 0.96204 0.97324 0.88759 1.23970 0.99659 0.94945 0.96993 0.90655 0.91669 0.91519 0.91511 0.91719 0.92140 0.85650 0.94201 0.98500 0.92832 0.96144 0.91739 0.89420 0.92163 0.86246 0.86052 0.90713 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.70 10.22 -39.27 -0.40 -6.10 16 4 C 0.46 8.17 7.47 36.00 0.27 8.44 16 5 O -0.49 -9.66 14.49 -18.75 -0.27 -9.93 16 6 C 0.07 1.36 5.41 -4.98 -0.03 1.33 16 7 N -0.52 -10.92 3.80 -237.51 -0.90 -11.82 16 8 C 0.19 4.81 4.60 -4.97 -0.02 4.79 16 9 C -0.51 -13.89 8.32 -34.44 -0.29 -14.18 16 10 H 0.06 1.72 7.75 -52.49 -0.41 1.31 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.06 1.19 3.81 -3.83 -0.01 1.18 16 18 C -0.08 -1.37 2.29 -87.94 -0.20 -1.58 16 19 H 0.08 1.65 6.17 -51.93 -0.32 1.33 16 20 C -0.10 -1.76 5.73 -24.05 -0.14 -1.90 16 21 C -0.08 -1.19 5.20 -86.40 -0.45 -1.64 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.17 -2.36 10.14 -34.86 -0.35 -2.71 16 24 C -0.17 -2.37 10.28 -33.23 -0.34 -2.72 16 25 C -0.07 -1.09 4.80 -84.77 -0.41 -1.50 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 C -0.12 -1.63 6.63 -22.10 -0.15 -1.78 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.13 2.49 7.12 -51.93 -0.37 2.12 16 35 H 0.04 1.06 5.92 -51.92 -0.31 0.76 16 36 H 0.00 -0.08 8.06 -51.93 -0.42 -0.49 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.06 1.15 5.43 -51.93 -0.28 0.87 16 40 H 0.09 1.72 7.20 -51.92 -0.37 1.34 16 41 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.07 1.07 7.00 -51.93 -0.36 0.71 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -29.75 357.73 -9.54 -39.28 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.46 Total: 2.79 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.60 Total: -10.73 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.17 Total: -37.08 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.67 Total: -16.03 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.75 -9.54 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207631282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.489 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds