Wall clock time and date at job start Tue Mar 31 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47030 * 2 1 4 4 C 1.34235 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99644 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46999 * 174.29480 * 6 4 3 8 8 C 1.46901 * 110.99833 * 163.86974 * 7 6 4 9 9 C 1.50707 * 109.47377 * 288.23998 * 8 7 6 10 10 H 1.07992 * 119.99768 * 355.78028 * 9 8 7 11 11 C 1.37875 * 119.99606 * 175.77857 * 9 8 7 12 12 N 1.31512 * 120.00430 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99486 * 180.27738 * 11 9 8 14 14 H 1.48502 * 109.46979 * 179.72229 * 13 11 9 15 15 H 1.48500 * 109.47084 * 299.72250 * 13 11 9 16 16 H 1.48500 * 109.46989 * 59.72372 * 13 11 9 17 17 C 1.46897 * 111.00258 * 287.82778 * 7 6 4 18 18 C 1.53001 * 109.46992 * 169.99854 * 17 7 6 19 19 H 1.09001 * 110.51739 * 56.33607 * 18 17 7 20 20 C 1.54828 * 110.58442 * 293.54362 * 18 17 7 21 21 C 1.56195 * 103.68844 * 241.45462 * 20 18 17 22 22 H 1.08996 * 116.29371 * 163.13605 * 21 20 18 23 23 C 1.53359 * 104.07390 * 292.47827 * 21 20 18 24 24 C 1.31800 * 108.42724 * 70.08262 * 23 21 20 25 25 C 1.56201 * 110.57965 * 179.28104 * 18 17 7 26 26 H 1.08998 * 116.29168 * 314.53704 * 25 18 17 27 27 C 1.57260 * 100.39695 * 82.22523 * 25 18 17 28 28 H 1.08997 * 109.47685 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47865 * 300.00257 * 1 2 3 30 30 H 1.09007 * 109.46995 * 60.00601 * 1 2 3 31 31 H 1.09000 * 109.47124 * 239.99719 * 2 1 3 32 32 H 1.09002 * 109.46803 * 119.99854 * 2 1 3 33 33 H 1.09000 * 109.47559 * 54.29832 * 6 4 3 34 34 H 1.08998 * 109.47407 * 294.29554 * 6 4 3 35 35 H 1.09007 * 109.46979 * 168.24084 * 8 7 6 36 36 H 1.08996 * 109.47120 * 48.24381 * 8 7 6 37 37 H 0.96998 * 119.99708 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.46827 * 289.99432 * 17 7 6 39 39 H 1.08996 * 109.46753 * 49.99906 * 17 7 6 40 40 H 1.09010 * 110.58048 * 0.02562 * 20 18 17 41 41 H 1.09002 * 110.57966 * 122.74914 * 20 18 17 42 42 H 1.08003 * 125.78572 * 250.08608 * 23 21 20 43 43 H 1.07999 * 125.78685 * 179.97438 * 24 23 21 44 44 H 1.08995 * 112.52342 * 300.92224 * 27 25 18 45 45 H 1.08999 * 112.52081 * 173.04927 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3813 2.8632 0.1384 8 6 6.0108 4.1367 -0.2355 9 6 5.9252 4.3201 -1.7289 10 1 5.5122 3.5363 -2.3463 11 6 6.3740 5.4887 -2.3067 12 7 6.8774 6.4431 -1.5548 13 14 6.2607 5.7192 -4.1570 14 1 6.7999 7.0534 -4.5236 15 1 7.0515 4.6619 -4.8369 16 1 4.8408 5.6254 -4.5815 17 6 5.7616 2.4680 1.5012 18 6 7.2596 2.1597 1.5434 19 1 7.8359 3.0160 1.1931 20 6 7.5810 0.9039 0.6967 21 6 8.1709 -0.1017 1.7361 22 1 8.2068 -1.1472 1.4299 23 6 9.5042 0.5314 2.1524 24 6 9.2486 1.6072 2.8696 25 6 7.6961 1.7535 2.9872 26 1 7.3193 2.3761 3.7986 27 6 7.2853 0.2354 2.9913 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5050 3.5029 0.8340 34 1 3.6693 3.4342 -0.9370 35 1 7.0571 4.1283 0.0701 36 1 5.4937 4.9574 0.2616 37 1 7.1928 7.2653 -1.9614 38 1 5.5385 3.2818 2.1910 39 1 5.1996 1.5805 1.7922 40 1 6.6729 0.5022 0.2470 41 1 8.3164 1.1386 -0.0729 42 1 10.4861 0.1588 1.9005 43 1 9.9856 2.2654 3.3055 44 1 6.2217 0.0902 2.8029 45 1 7.6186 -0.2848 3.8893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207631282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:23 Heat of formation + Delta-G solvation = -64.195791 kcal Electronic energy + Delta-G solvation = -24501.735672 eV Core-core repulsion = 21098.484494 eV Total energy + Delta-G solvation = -3403.251178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68467 -41.21556 -38.43108 -37.17737 -34.70485 -32.82126 -32.26107 -29.97645 -29.85055 -28.85060 -27.69526 -25.42247 -24.29523 -23.04511 -21.78563 -21.23527 -20.45239 -18.85440 -18.72003 -18.48675 -17.65747 -17.34243 -17.21718 -16.66487 -16.49566 -15.66160 -15.36939 -15.06639 -14.79378 -14.35491 -14.03233 -13.72690 -13.64302 -13.41908 -13.25726 -13.13008 -12.83611 -12.72138 -12.68403 -12.48206 -12.45520 -12.19737 -12.16459 -11.98995 -11.89479 -11.60341 -11.50438 -11.44127 -11.38897 -11.12424 -10.89349 -10.55724 -9.78298 -9.06326 -8.18752 -6.28257 1.27209 1.40986 1.41441 1.43575 1.51299 1.66030 2.40751 3.13757 3.18769 3.57943 3.67149 3.84519 3.88540 4.03707 4.10770 4.14001 4.20744 4.22902 4.37177 4.39534 4.44726 4.50398 4.60039 4.65813 4.71683 4.76074 4.82555 4.87326 4.95146 5.08740 5.11671 5.13436 5.16898 5.23106 5.24934 5.34414 5.40242 5.46043 5.50764 5.63619 5.67721 6.06800 6.13308 6.21245 6.53982 6.86144 6.90536 7.41046 8.91047 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008001 B = 0.007029 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.858873 B = 3982.319803 C = 6848.232747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.367 6.367 4 C 0.469 3.531 5 O -0.512 6.512 6 C 0.069 3.931 7 N -0.529 5.529 8 C 0.213 3.787 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.961 3.039 14 H -0.282 1.282 15 H -0.275 1.275 16 H -0.266 1.266 17 C 0.071 3.929 18 C -0.079 4.079 19 H 0.046 0.954 20 C -0.097 4.097 21 C -0.078 4.078 22 H 0.106 0.894 23 C -0.170 4.170 24 C -0.176 4.176 25 C -0.072 4.072 26 H 0.107 0.893 27 C -0.109 4.109 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.016 0.984 36 H -0.025 1.025 37 H 0.264 0.736 38 H 0.023 0.977 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 -12.820 8.776 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.284 6.284 4 C 0.312 3.688 5 O -0.400 6.400 6 C -0.060 4.060 7 N -0.254 5.254 8 C 0.087 3.913 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.189 4.189 12 N -0.570 5.570 13 Si 0.786 3.214 14 H -0.208 1.208 15 H -0.200 1.200 16 H -0.191 1.191 17 C -0.057 4.057 18 C -0.097 4.097 19 H 0.065 0.935 20 C -0.135 4.135 21 C -0.096 4.096 22 H 0.124 0.876 23 C -0.188 4.188 24 C -0.193 4.193 25 C -0.091 4.091 26 H 0.126 0.874 27 C -0.146 4.146 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.728 -13.317 8.426 16.767 hybrid contribution 0.081 1.191 -0.695 1.381 sum -5.647 -12.126 7.731 15.450 Atomic orbital electron populations 1.21817 0.90274 1.04379 1.03640 1.23268 0.97120 0.79264 1.02382 1.86508 1.23905 1.33867 1.84121 1.23801 0.80516 0.92644 0.71851 1.90588 1.60755 1.43320 1.45320 1.21485 0.89628 0.89885 1.05028 1.61593 1.05336 1.33761 1.24681 1.19417 0.93412 0.83262 0.95167 1.21378 1.40802 1.00993 0.92984 0.92496 1.25770 0.94844 0.95477 1.02810 1.70055 1.42516 1.07176 1.37229 0.85572 0.78878 0.77124 0.79870 1.20770 1.20000 1.19064 1.22117 0.96458 0.98809 0.88329 1.22218 0.94356 0.97527 0.95635 0.93523 1.22491 0.99800 0.94778 0.96431 1.22981 0.92953 0.98251 0.95460 0.87550 1.24232 0.98317 0.97874 0.98333 1.24803 0.96124 0.97951 1.00465 1.23546 0.93039 0.97124 0.95387 0.87442 1.23922 0.99182 0.94061 0.97406 0.87951 0.91163 0.91553 0.91828 0.91186 0.90346 0.86958 0.96564 1.00738 0.92677 0.95877 0.90776 0.91611 0.94440 0.84383 0.84619 0.91275 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.22 6.19 71.98 0.45 1.66 16 3 O -0.37 -11.01 10.22 -51.47 -0.53 -11.54 16 4 C 0.47 16.64 7.47 71.23 0.53 17.18 16 5 O -0.51 -20.13 14.49 21.97 0.32 -19.81 16 6 C 0.07 2.64 5.41 85.56 0.46 3.10 16 7 N -0.53 -23.03 3.80 -905.36 -3.44 -26.46 16 8 C 0.21 11.08 4.60 85.56 0.39 11.47 16 9 C -0.52 -29.32 8.32 25.60 0.21 -29.11 16 10 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 11 C 0.01 0.54 5.46 84.65 0.46 1.00 16 12 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 13 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 C 0.07 2.64 3.81 86.30 0.33 2.97 16 18 C -0.08 -2.85 2.29 -9.06 -0.02 -2.87 16 19 H 0.05 2.01 6.17 -2.39 -0.01 1.99 16 20 C -0.10 -3.51 5.73 32.33 0.19 -3.33 16 21 C -0.08 -2.18 5.20 -8.06 -0.04 -2.22 16 22 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 23 C -0.17 -4.47 10.14 25.79 0.26 -4.20 16 24 C -0.18 -4.74 10.28 26.85 0.28 -4.46 16 25 C -0.07 -2.05 4.80 -7.00 -0.03 -2.09 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 C -0.11 -2.78 6.63 33.60 0.22 -2.56 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.08 2.70 8.05 -2.39 -0.02 2.68 16 34 H 0.11 4.60 7.12 -2.39 -0.02 4.58 16 35 H 0.02 0.93 5.92 -2.38 -0.01 0.91 16 36 H -0.03 -1.39 8.06 -2.39 -0.02 -1.41 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 39 H 0.07 2.65 5.43 -2.39 -0.01 2.63 16 40 H 0.07 2.65 7.20 -2.38 -0.02 2.63 16 41 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.07 1.86 7.00 -2.39 -0.02 1.84 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.11 357.73 4.05 -61.06 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.96 Total: 20.20 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.43 Total: -14.94 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.15 Total: -81.22 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.21 Total: -31.35 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.11 4.05 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207631282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.133 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds