Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 110.99868 * 2 1 4 4 C 1.50695 * 109.47243 * 293.95158 * 3 2 1 5 5 H 1.08000 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00133 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00021 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47158 * 89.99841 * 8 6 4 10 10 H 1.48494 * 109.47074 * 210.00341 * 8 6 4 11 11 H 1.48504 * 109.47117 * 329.99709 * 8 6 4 12 12 C 1.46904 * 111.00198 * 123.95321 * 2 1 3 13 13 C 1.52998 * 109.46717 * 66.04781 * 12 2 1 14 14 O 1.42901 * 109.47472 * 65.00549 * 13 12 2 15 15 C 1.42897 * 114.00180 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47318 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46972 * 64.99847 * 16 15 14 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 1.08995 * 109.47611 * 296.04777 * 1 2 3 26 26 H 1.09005 * 109.47189 * 56.04618 * 1 2 3 27 27 H 1.08996 * 109.47244 * 176.04504 * 1 2 3 28 28 H 1.08991 * 109.46972 * 53.95532 * 3 2 1 29 29 H 1.09003 * 109.46875 * 173.95122 * 3 2 1 30 30 H 0.96998 * 120.00275 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46897 * 306.04833 * 12 2 1 32 32 H 1.08997 * 109.46981 * 186.04693 * 12 2 1 33 33 H 1.08999 * 109.47411 * 304.99475 * 13 12 2 34 34 H 1.09007 * 109.46934 * 185.00203 * 13 12 2 35 35 H 1.09006 * 109.47006 * 59.99391 * 15 14 13 36 36 H 1.08996 * 109.47089 * 299.99896 * 15 14 13 37 37 H 1.09005 * 109.47112 * 304.99917 * 16 15 14 38 38 H 1.08993 * 109.47202 * 185.00020 * 16 15 14 39 39 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 40 40 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 41 41 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 2.7118 4.0020 -0.6149 8 14 1.5818 4.1873 -3.1377 9 1 0.2693 4.8673 -2.9954 10 1 2.6237 5.1887 -3.4790 11 1 1.4986 3.1718 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 8 2.2957 -2.7696 -0.1800 15 6 2.0223 -4.1502 -0.4274 16 6 2.7810 -4.6046 -1.6759 17 8 4.1871 -4.5356 -1.4302 18 6 4.9914 -4.9405 -2.5397 19 6 6.4485 -4.8280 -2.1714 20 6 7.1024 -5.9043 -1.6013 21 6 8.4390 -5.8013 -1.2640 22 6 9.1218 -4.6222 -1.4973 23 6 8.4666 -3.5442 -2.0625 24 6 7.1312 -3.6488 -2.4041 25 1 -0.3634 0.4512 0.9232 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5611 1.9273 0.8309 29 1 3.0797 1.3444 0.1083 30 1 2.9857 4.9183 -0.7766 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6610 1.1756 33 1 0.5532 -2.3389 0.8433 34 1 1.9439 -2.7964 1.8557 35 1 0.9521 -4.2864 -0.5833 36 1 2.3431 -4.7432 0.4290 37 1 2.5261 -3.9543 -2.5128 38 1 2.5040 -5.6310 -1.9159 39 1 4.7824 -4.2969 -3.3943 40 1 4.7604 -5.9740 -2.7980 41 1 6.5689 -6.8257 -1.4194 42 1 8.9497 -6.6420 -0.8182 43 1 10.1662 -4.5420 -1.2342 44 1 8.9989 -2.6216 -2.2408 45 1 6.6205 -2.8082 -2.8502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208742858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = -60.759514 kcal Electronic energy + Delta-G solvation = -22832.568114 eV Core-core repulsion = 19429.465944 eV Total energy + Delta-G solvation = -3403.102169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.45695 -38.25226 -37.30125 -35.91994 -32.59529 -32.20780 -30.98665 -30.21324 -28.44844 -26.87960 -25.90027 -24.92411 -22.67261 -22.43521 -21.90820 -21.38918 -19.92466 -17.11885 -16.84839 -16.67046 -16.27739 -15.70698 -15.58403 -15.49470 -14.69854 -14.55739 -14.43947 -13.92148 -13.75606 -13.56991 -13.48454 -12.83927 -12.79865 -12.48801 -12.11718 -11.87474 -11.80352 -11.53186 -11.19089 -11.12301 -11.03289 -10.97647 -10.81489 -10.63906 -10.52542 -10.28680 -9.71263 -9.62979 -9.23023 -9.10531 -9.00227 -8.92911 -8.36979 -7.08979 -5.95583 -3.96077 1.16947 1.32045 3.35921 3.41769 3.45531 3.46944 3.95629 4.02804 4.48395 4.69991 4.73218 4.90811 5.01052 5.05142 5.08332 5.17660 5.24889 5.28893 5.33439 5.39867 5.44035 5.55273 5.56095 5.60201 5.64195 5.81801 5.85072 5.87099 5.95504 6.10562 6.21492 6.33853 6.38561 6.41698 6.49264 6.51766 6.80675 6.88912 7.16261 7.37976 7.41963 7.60442 7.88743 8.19333 8.31103 8.65289 9.11620 9.67413 11.15526 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003296 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.963056 B = 8492.386276 C = 9841.634236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.056 3.944 13 C 0.070 3.930 14 O -0.355 6.355 15 C 0.063 3.937 16 C 0.065 3.935 17 O -0.370 6.370 18 C 0.102 3.898 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.093 4.093 25 H 0.008 0.992 26 H 0.073 0.927 27 H 0.043 0.957 28 H -0.011 1.011 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -21.849 -0.890 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.073 4.073 13 C -0.007 4.007 14 O -0.273 6.273 15 C -0.015 4.015 16 C -0.011 4.011 17 O -0.289 6.289 18 C 0.025 3.975 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.111 4.111 25 H 0.026 0.974 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.007 0.993 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.079 -21.722 -1.235 22.591 hybrid contribution -0.760 0.737 -0.057 1.060 sum 5.319 -20.985 -1.292 21.687 Atomic orbital electron populations 1.22250 0.89389 0.99240 1.00352 1.62055 1.06403 1.17537 1.39594 1.19733 0.95461 0.81584 0.96479 1.21173 1.34462 0.96765 1.01728 0.91894 1.24991 0.95405 0.97387 0.96952 1.69961 1.38596 1.11350 1.34130 0.86508 0.77900 0.79198 0.83879 1.20834 1.21288 1.19775 1.22058 1.01211 0.91277 0.92785 1.22584 0.95806 0.94956 0.87387 1.88158 1.70102 1.22371 1.46703 1.22413 0.97415 0.84910 0.96717 1.22526 0.81343 0.99219 0.98037 1.88061 1.16022 1.88055 1.36807 1.21288 0.87573 0.98906 0.89691 1.19624 0.94336 0.94463 1.00391 1.21029 0.94665 0.98433 0.97849 1.21107 0.94611 0.98035 1.00823 1.21191 0.99918 0.93444 0.98977 1.21203 0.94814 0.98832 0.99174 1.21192 0.94449 0.96929 0.98571 0.97381 0.90780 0.93825 0.99348 0.95187 0.93019 0.94656 0.90521 0.93720 0.94123 0.92353 0.93275 0.91993 0.92385 0.92236 0.92838 0.86166 0.86122 0.86135 0.85766 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.53 -12.27 4.70 -244.38 -1.15 -13.42 16 3 C 0.19 5.27 4.72 -4.98 -0.02 5.25 16 4 C -0.50 -14.66 8.46 -34.44 -0.29 -14.95 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.06 1.08 5.34 -3.82 -0.02 1.06 16 13 C 0.07 1.12 5.99 37.16 0.22 1.35 16 14 O -0.35 -6.31 10.26 -40.09 -0.41 -6.72 16 15 C 0.06 0.82 6.32 37.16 0.23 1.06 16 16 C 0.07 0.80 6.32 37.16 0.23 1.03 16 17 O -0.37 -5.35 10.29 -40.09 -0.41 -5.76 16 18 C 0.10 1.18 6.06 36.01 0.22 1.40 16 19 C -0.09 -1.07 5.51 -104.62 -0.58 -1.65 16 20 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 21 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 24 C -0.09 -1.16 9.70 -39.58 -0.38 -1.55 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 27 H 0.04 0.76 6.37 -51.93 -0.33 0.43 16 28 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 29 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 33 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -33.81 374.58 -9.80 -43.61 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.68 Total: -3.05 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.51 Total: -10.69 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.41 Total: -40.16 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.82 Total: -12.48 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.81 -9.80 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208742858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds