Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 110.99868 * 2 1 4 4 C 1.50695 * 109.47243 * 293.95158 * 3 2 1 5 5 H 1.08000 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00133 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00021 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47158 * 89.99841 * 8 6 4 10 10 H 1.48494 * 109.47074 * 210.00341 * 8 6 4 11 11 H 1.48504 * 109.47117 * 329.99709 * 8 6 4 12 12 C 1.46904 * 111.00198 * 123.95321 * 2 1 3 13 13 C 1.52998 * 109.46717 * 66.04781 * 12 2 1 14 14 O 1.42901 * 109.47472 * 65.00549 * 13 12 2 15 15 C 1.42897 * 114.00180 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47318 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46972 * 64.99847 * 16 15 14 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 1.08995 * 109.47611 * 296.04777 * 1 2 3 26 26 H 1.09005 * 109.47189 * 56.04618 * 1 2 3 27 27 H 1.08996 * 109.47244 * 176.04504 * 1 2 3 28 28 H 1.08991 * 109.46972 * 53.95532 * 3 2 1 29 29 H 1.09003 * 109.46875 * 173.95122 * 3 2 1 30 30 H 0.96998 * 120.00275 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46897 * 306.04833 * 12 2 1 32 32 H 1.08997 * 109.46981 * 186.04693 * 12 2 1 33 33 H 1.08999 * 109.47411 * 304.99475 * 13 12 2 34 34 H 1.09007 * 109.46934 * 185.00203 * 13 12 2 35 35 H 1.09006 * 109.47006 * 59.99391 * 15 14 13 36 36 H 1.08996 * 109.47089 * 299.99896 * 15 14 13 37 37 H 1.09005 * 109.47112 * 304.99917 * 16 15 14 38 38 H 1.08993 * 109.47202 * 185.00020 * 16 15 14 39 39 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 40 40 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 41 41 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 2.7118 4.0020 -0.6149 8 14 1.5818 4.1873 -3.1377 9 1 0.2693 4.8673 -2.9954 10 1 2.6237 5.1887 -3.4790 11 1 1.4986 3.1718 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 8 2.2957 -2.7696 -0.1800 15 6 2.0223 -4.1502 -0.4274 16 6 2.7810 -4.6046 -1.6759 17 8 4.1871 -4.5356 -1.4302 18 6 4.9914 -4.9405 -2.5397 19 6 6.4485 -4.8280 -2.1714 20 6 7.1024 -5.9043 -1.6013 21 6 8.4390 -5.8013 -1.2640 22 6 9.1218 -4.6222 -1.4973 23 6 8.4666 -3.5442 -2.0625 24 6 7.1312 -3.6488 -2.4041 25 1 -0.3634 0.4512 0.9232 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5611 1.9273 0.8309 29 1 3.0797 1.3444 0.1083 30 1 2.9857 4.9183 -0.7766 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6610 1.1756 33 1 0.5532 -2.3389 0.8433 34 1 1.9439 -2.7964 1.8557 35 1 0.9521 -4.2864 -0.5833 36 1 2.3431 -4.7432 0.4290 37 1 2.5261 -3.9543 -2.5128 38 1 2.5040 -5.6310 -1.9159 39 1 4.7824 -4.2969 -3.3943 40 1 4.7604 -5.9740 -2.7980 41 1 6.5689 -6.8257 -1.4194 42 1 8.9497 -6.6420 -0.8182 43 1 10.1662 -4.5420 -1.2342 44 1 8.9989 -2.6216 -2.2408 45 1 6.6205 -2.8082 -2.8502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208742858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = -82.752907 kcal Electronic energy + Delta-G solvation = -22833.521819 eV Core-core repulsion = 19429.465944 eV Total energy + Delta-G solvation = -3404.055874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29558 -39.44507 -38.52189 -37.46625 -34.72108 -33.13886 -31.79672 -31.49773 -29.88324 -28.74447 -26.84995 -26.68749 -23.76830 -23.48842 -23.41068 -22.22035 -21.64639 -18.51374 -18.03064 -17.88233 -17.65826 -17.01998 -16.67850 -16.49879 -16.39578 -15.77446 -15.63322 -15.42766 -15.23853 -14.91976 -14.28956 -14.21902 -13.84917 -13.73046 -13.58296 -13.30495 -13.13075 -12.95090 -12.73387 -12.70899 -12.44723 -12.38559 -12.19464 -11.97678 -11.90518 -11.82142 -11.59318 -11.20279 -10.62384 -10.57508 -10.39648 -9.83299 -9.76267 -8.94410 -8.20203 -6.30584 0.33748 0.48872 1.39745 1.42280 1.54042 2.40480 2.60737 2.84064 3.11679 3.16087 3.37054 3.87282 3.91342 4.08119 4.14347 4.23225 4.26905 4.28499 4.33566 4.35798 4.42799 4.44789 4.52138 4.59337 4.60427 4.65783 4.71701 4.76160 4.77898 4.86634 4.95168 5.07552 5.08649 5.14585 5.16984 5.31414 5.53931 5.60007 5.64713 5.67200 6.05340 6.09193 6.24712 6.36070 6.46728 6.69001 6.85658 7.38879 8.91189 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003296 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.963056 B = 8492.386276 C = 9841.634236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.052 3.948 13 C 0.078 3.922 14 O -0.395 6.395 15 C 0.057 3.943 16 C 0.062 3.938 17 O -0.400 6.400 18 C 0.100 3.900 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.136 4.136 24 C -0.122 4.122 25 H 0.013 0.987 26 H 0.055 0.945 27 H 0.079 0.921 28 H -0.037 1.037 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -23.966 -1.266 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.269 5.269 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.076 4.076 13 C 0.001 3.999 14 O -0.315 6.315 15 C -0.020 4.020 16 C -0.014 4.014 17 O -0.321 6.321 18 C 0.025 3.975 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.154 4.154 24 C -0.140 4.140 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.098 0.902 28 H -0.019 1.019 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.423 -23.868 -1.605 24.529 hybrid contribution -0.513 1.325 0.112 1.425 sum 4.909 -22.544 -1.493 23.120 Atomic orbital electron populations 1.22246 0.87504 1.01237 0.99779 1.61968 1.08184 1.14907 1.41886 1.19373 0.93317 0.84010 0.95143 1.21462 1.34824 0.97468 1.02330 0.91996 1.25963 0.94969 0.98041 1.00894 1.70093 1.39399 1.11852 1.36345 0.85343 0.78072 0.78019 0.78948 1.19473 1.20636 1.19014 1.22150 0.99884 0.93505 0.92081 1.22504 0.96636 0.92409 0.88325 1.88108 1.70953 1.25133 1.47309 1.22699 0.99062 0.82662 0.97529 1.22692 0.80454 1.01026 0.97252 1.88012 1.17259 1.88633 1.38166 1.21401 0.87115 1.00235 0.88791 1.19842 0.94832 0.94893 1.01212 1.21326 0.95305 0.98669 0.97310 1.21510 0.94407 0.98779 0.99918 1.21543 1.01168 0.93060 0.98124 1.21432 0.94517 0.99961 0.99491 1.21294 0.95455 0.97183 1.00063 0.96877 0.92587 0.90216 1.01895 0.98594 0.92663 0.93405 0.92723 0.91969 0.91346 0.89909 0.92108 0.93408 0.88610 0.92837 0.90101 0.84175 0.83239 0.83632 0.84867 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.78 16 2 N -0.54 -25.55 4.70 -927.07 -4.36 -29.91 16 3 C 0.21 11.88 4.72 85.55 0.40 12.29 16 4 C -0.52 -31.23 8.46 25.60 0.22 -31.01 16 5 H 0.06 3.63 7.12 -2.91 -0.02 3.61 16 6 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 7 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 8 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.05 2.03 5.34 86.30 0.46 2.49 16 13 C 0.08 2.37 5.99 71.98 0.43 2.80 16 14 O -0.40 -13.71 10.26 -144.34 -1.48 -15.19 16 15 C 0.06 1.37 6.32 71.98 0.45 1.82 16 16 C 0.06 1.42 6.32 71.98 0.45 1.88 16 17 O -0.40 -11.42 10.29 -144.34 -1.49 -12.91 16 18 C 0.10 2.30 6.06 71.24 0.43 2.73 16 19 C -0.11 -2.63 5.51 -19.86 -0.11 -2.74 16 20 C -0.11 -2.16 9.70 22.27 0.22 -1.95 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 22 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 24 C -0.12 -3.20 9.70 22.27 0.22 -2.98 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 2.42 6.76 -2.38 -0.02 2.40 16 27 H 0.08 2.59 6.37 -2.39 -0.02 2.58 16 28 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 29 H 0.00 -0.25 7.93 -2.39 -0.02 -0.27 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.05 1.72 8.12 -2.39 -0.02 1.71 16 32 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 33 H 0.06 1.66 6.34 -2.39 -0.02 1.65 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.23 8.08 -2.38 -0.02 1.22 16 40 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -75.27 374.58 1.40 -73.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.93 Total: 12.92 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 5.48 Total: -18.41 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -4.07 Total: -88.08 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -2.97 Total: -28.10 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.27 1.40 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208742858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.879 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds