Wall clock time and date at job start Tue Mar 31 2020 07:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48500 * 109.47624 * 174.65888 * 3 2 1 5 5 H 1.48498 * 109.47181 * 294.66180 * 3 2 1 6 6 H 1.48503 * 109.47087 * 54.65701 * 3 2 1 7 7 C 1.37873 * 120.00583 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84844 * 348.88128 * 7 2 1 9 9 C 1.53241 * 108.48665 * 231.36441 * 8 7 2 10 10 C 1.52950 * 109.39767 * 305.27023 * 9 8 7 11 11 H 1.09011 * 109.41327 * 303.62777 * 10 9 8 12 12 N 1.46500 * 109.41457 * 183.77501 * 10 9 8 13 13 C 1.34779 * 120.00281 * 84.85050 * 12 10 9 14 14 O 1.21274 * 120.00160 * 0.02562 * 13 12 10 15 15 C 1.50701 * 120.00025 * 180.27753 * 13 12 10 16 16 C 1.54389 * 111.79755 * 273.71469 * 15 13 12 17 17 N 1.48497 * 104.81627 * 261.65915 * 16 15 13 18 18 C 1.48560 * 104.20934 * 320.66452 * 17 16 15 19 19 C 1.54229 * 104.55101 * 39.99526 * 18 17 16 20 20 H 1.08998 * 112.27387 * 97.55879 * 19 18 17 21 21 C 1.54412 * 108.97916 * 223.14863 * 19 18 17 22 22 C 1.54912 * 102.98882 * 134.45217 * 21 19 18 23 23 N 1.47883 * 111.75940 * 35.77461 * 15 13 12 24 24 C 1.52956 * 109.76563 * 63.70141 * 10 9 8 25 25 C 1.51263 * 120.85343 * 168.85998 * 7 2 1 26 26 H 0.96995 * 120.00162 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62865 * 351.04329 * 8 7 2 28 28 H 1.09000 * 109.62445 * 111.60914 * 8 7 2 29 29 H 1.08993 * 109.42780 * 185.32050 * 9 8 7 30 30 H 1.09004 * 109.53749 * 65.27584 * 9 8 7 31 31 H 0.96997 * 119.99846 * 264.85864 * 12 10 9 32 32 H 1.08995 * 110.37395 * 20.49812 * 16 15 13 33 33 H 1.09002 * 110.37011 * 142.71432 * 16 15 13 34 34 H 1.00895 * 111.00179 * 80.21931 * 17 16 15 35 35 H 1.09000 * 110.41700 * 158.76140 * 18 17 16 36 36 H 1.09001 * 110.42049 * 281.10198 * 18 17 16 37 37 H 1.09008 * 110.71455 * 252.82688 * 21 19 18 38 38 H 1.08997 * 110.71603 * 15.90231 * 21 19 18 39 39 H 1.08998 * 110.67044 * 80.63749 * 22 21 19 40 40 H 1.08995 * 110.67358 * 203.61663 * 22 21 19 41 41 H 1.00902 * 111.00006 * 218.23486 * 23 15 13 42 42 H 1.08996 * 109.47927 * 56.34334 * 24 10 9 43 43 H 1.08999 * 109.48461 * 176.39209 * 24 10 9 44 44 H 1.09000 * 109.62840 * 8.95901 * 25 7 2 45 45 H 1.09002 * 109.62789 * 248.38976 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3496 0.1303 5 1 1.9907 2.3385 -1.2723 6 1 1.7952 2.4514 1.1421 7 6 2.0047 -1.1939 0.0005 8 6 1.2890 -2.5028 0.2516 9 6 2.0337 -3.2596 1.3566 10 6 3.5045 -3.4118 0.9656 11 1 3.5727 -3.9118 -0.0007 12 7 4.1972 -4.2127 1.9780 13 6 4.1694 -5.5584 1.9078 14 8 3.5715 -6.1063 1.0061 15 6 4.8767 -6.3822 2.9528 16 6 6.3639 -6.6010 2.6005 17 7 6.4135 -7.9513 1.9846 18 6 5.4662 -8.7576 2.7966 19 6 4.2802 -7.8086 3.0641 20 1 3.4569 -7.9699 2.3683 21 6 3.8489 -7.9476 4.5402 22 6 3.6816 -6.4759 4.9941 23 7 4.7941 -5.7584 4.2911 24 6 4.1602 -2.0331 0.8720 25 6 3.4959 -1.2287 -0.2503 26 1 -0.4850 0.8400 0.0004 27 1 0.2652 -2.3053 0.5692 28 1 1.2835 -3.0980 -0.6616 29 1 1.5875 -4.2458 1.4846 30 1 1.9617 -2.7036 2.2914 31 1 4.6757 -3.7745 2.6990 32 1 6.7002 -5.8469 1.8891 33 1 6.9758 -6.5707 3.5021 34 1 6.1248 -7.9188 1.0184 35 1 5.1346 -9.6322 2.2370 36 1 5.9318 -9.0611 3.7342 37 1 2.9033 -8.4844 4.6167 38 1 4.6227 -8.4478 5.1226 39 1 2.7184 -6.0808 4.6713 40 1 3.7873 -6.3924 6.0757 41 1 5.6585 -5.8751 4.7984 42 1 4.0368 -1.5069 1.8185 43 1 5.2223 -2.1495 0.6562 44 1 3.8902 -0.2125 -0.2551 45 1 3.6948 -1.7060 -1.2099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:00 Heat of formation + Delta-G solvation = -36.638958 kcal Electronic energy + Delta-G solvation = -24904.565026 eV Core-core repulsion = 21534.801553 eV Total energy + Delta-G solvation = -3369.763472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02340 -38.55836 -36.55996 -35.27027 -33.65834 -31.93333 -31.07036 -29.61163 -28.67928 -27.09539 -26.70684 -23.51167 -22.13739 -21.80025 -21.58580 -20.52761 -19.61616 -18.90181 -17.46454 -16.65560 -16.33318 -15.83407 -15.39544 -15.30333 -14.44468 -14.27396 -14.11295 -13.65323 -13.39960 -13.09250 -12.93804 -12.79984 -12.54383 -12.27524 -12.05581 -12.01119 -11.84202 -11.60910 -11.31223 -11.13715 -11.02292 -10.93881 -10.83908 -10.71993 -10.23007 -9.91275 -9.71850 -9.37153 -9.23828 -9.04906 -8.83532 -8.68296 -8.39683 -8.20202 -6.09408 -3.98379 2.83519 3.26408 3.35288 3.36626 3.55052 3.67761 3.94690 4.38577 4.39081 4.55301 4.62737 4.78955 4.92935 5.00469 5.10009 5.15510 5.18182 5.40249 5.45706 5.54705 5.62157 5.66498 5.74252 5.77472 5.91804 5.95323 6.16578 6.20630 6.40045 6.51147 6.58417 6.76624 6.81082 6.86156 6.96023 6.99542 7.08769 7.13000 7.29738 7.43319 7.66157 7.80014 7.86500 8.03194 8.41564 8.63989 8.98608 9.56029 11.00213 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.003863 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.167893 B = 7245.624718 C = 7423.064720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.488 4.488 8 C 0.014 3.986 9 C -0.111 4.111 10 C 0.153 3.847 11 H 0.075 0.925 12 N -0.705 5.705 13 C 0.535 3.465 14 O -0.549 6.549 15 C 0.046 3.954 16 C 0.048 3.952 17 N -0.665 5.665 18 C 0.047 3.953 19 C -0.134 4.134 20 H 0.105 0.895 21 C -0.146 4.146 22 C 0.039 3.961 23 N -0.652 5.652 24 C -0.113 4.113 25 C -0.021 4.021 26 H 0.263 0.737 27 H 0.053 0.947 28 H 0.005 0.995 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.346 0.654 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.341 0.659 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 -13.698 10.433 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.507 4.507 8 C -0.024 4.024 9 C -0.150 4.150 10 C 0.050 3.950 11 H 0.093 0.907 12 N -0.353 5.353 13 C 0.319 3.681 14 O -0.427 6.427 15 C -0.051 4.051 16 C -0.083 4.083 17 N -0.291 5.291 18 C -0.082 4.082 19 C -0.156 4.156 20 H 0.123 0.877 21 C -0.186 4.186 22 C -0.090 4.090 23 N -0.282 5.282 24 C -0.151 4.151 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.235 0.765 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.158 0.842 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.500 -13.549 9.857 20.322 hybrid contribution -0.023 0.620 0.427 0.753 sum 11.477 -12.929 10.284 20.116 Atomic orbital electron populations 1.69909 1.06261 1.26801 1.49351 1.24853 0.94613 0.98549 0.94621 0.86758 0.81043 0.83780 0.77777 1.18095 1.20960 1.21258 1.20036 0.90890 0.92023 1.47769 1.19329 0.97226 0.93359 0.92514 1.21942 0.93939 0.98255 1.00901 1.21061 0.92726 0.90694 0.90530 0.90667 1.46269 1.53411 1.05636 1.29992 1.19733 0.80150 0.83061 0.85196 1.90686 1.44009 1.71849 1.36133 1.23298 0.97511 0.93131 0.91135 1.23302 0.91967 0.91863 1.01193 1.63262 1.49911 1.08993 1.06912 1.23149 0.90015 0.96272 0.98808 1.23598 1.00330 0.93429 0.98218 0.87660 1.23122 1.02241 0.98446 0.94769 1.23446 0.96292 0.90774 0.98513 1.63331 1.08993 1.54277 1.01574 1.21861 0.96786 0.94820 1.01640 1.19912 0.96097 0.96382 0.93540 0.92695 0.92790 0.97629 0.94962 0.93315 0.76516 0.90000 0.89159 0.83810 0.90458 0.90130 0.90506 0.90997 0.89907 0.90232 0.84201 0.92607 0.94573 0.93821 0.96305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 12.82 55.43 0.71 -25.01 16 2 C 0.08 2.09 5.44 -17.82 -0.10 1.99 16 3 Si 0.88 20.61 27.95 -169.99 -4.75 15.86 16 4 H -0.26 -5.67 5.58 56.52 0.32 -5.35 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.49 -12.92 5.48 -98.93 -0.54 -13.46 16 8 C 0.01 0.35 5.93 -27.48 -0.16 0.19 16 9 C -0.11 -2.51 5.50 -26.63 -0.15 -2.65 16 10 C 0.15 3.06 2.35 -67.98 -0.16 2.90 16 11 H 0.08 1.67 7.57 -51.92 -0.39 1.27 16 12 N -0.70 -11.58 5.00 -53.85 -0.27 -11.85 16 13 C 0.54 8.70 6.77 -10.98 -0.07 8.62 16 14 O -0.55 -10.99 15.45 5.56 0.09 -10.91 16 15 C 0.05 0.54 1.10 -130.42 -0.14 0.39 16 16 C 0.05 0.49 6.70 -2.21 -0.01 0.47 16 17 N -0.66 -6.87 7.62 -109.79 -0.84 -7.71 16 18 C 0.05 0.44 7.00 -2.26 -0.02 0.42 16 19 C -0.13 -1.45 3.50 -88.18 -0.31 -1.76 16 20 H 0.11 1.44 7.07 -51.93 -0.37 1.07 16 21 C -0.15 -1.25 6.61 -24.98 -0.17 -1.41 16 22 C 0.04 0.36 7.55 -1.14 -0.01 0.36 16 23 N -0.65 -6.47 6.66 -95.33 -0.63 -7.10 16 24 C -0.11 -2.23 5.40 -26.63 -0.14 -2.37 16 25 C -0.02 -0.49 5.65 -27.49 -0.16 -0.65 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.05 1.52 7.19 -51.93 -0.37 1.15 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.40 5.79 8.11 -40.82 -0.33 5.46 16 32 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 33 H 0.09 0.75 7.22 -51.93 -0.38 0.38 16 34 H 0.35 3.84 8.92 -39.29 -0.35 3.49 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.65 7.19 -51.93 -0.37 0.28 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.07 0.50 7.19 -51.93 -0.37 0.13 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.34 2.64 7.73 -39.29 -0.30 2.33 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.99 4.36 -51.93 -0.23 0.77 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -30.08 340.45 -10.03 -40.10 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.33 Total: 8.45 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.14 Total: -6.97 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -1.03 Total: -51.68 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.75 Total: 15.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.08 -10.03 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.466 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds