Wall clock time and date at job start Tue Mar 31 2020 07:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48500 * 109.47624 * 174.65888 * 3 2 1 5 5 H 1.48498 * 109.47181 * 294.66180 * 3 2 1 6 6 H 1.48503 * 109.47087 * 54.65701 * 3 2 1 7 7 C 1.37873 * 120.00583 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84844 * 348.88128 * 7 2 1 9 9 C 1.53241 * 108.48665 * 231.36441 * 8 7 2 10 10 C 1.52950 * 109.39767 * 305.27023 * 9 8 7 11 11 H 1.09011 * 109.41327 * 303.62777 * 10 9 8 12 12 N 1.46500 * 109.41457 * 183.77501 * 10 9 8 13 13 C 1.34779 * 120.00281 * 84.85050 * 12 10 9 14 14 O 1.21274 * 120.00160 * 0.02562 * 13 12 10 15 15 C 1.50701 * 120.00025 * 180.27753 * 13 12 10 16 16 C 1.54389 * 111.79755 * 273.71469 * 15 13 12 17 17 N 1.48497 * 104.81627 * 261.65915 * 16 15 13 18 18 C 1.48560 * 104.20934 * 320.66452 * 17 16 15 19 19 C 1.54229 * 104.55101 * 39.99526 * 18 17 16 20 20 H 1.08998 * 112.27387 * 97.55879 * 19 18 17 21 21 C 1.54412 * 108.97916 * 223.14863 * 19 18 17 22 22 C 1.54912 * 102.98882 * 134.45217 * 21 19 18 23 23 N 1.47883 * 111.75940 * 35.77461 * 15 13 12 24 24 C 1.52956 * 109.76563 * 63.70141 * 10 9 8 25 25 C 1.51263 * 120.85343 * 168.85998 * 7 2 1 26 26 H 0.96995 * 120.00162 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62865 * 351.04329 * 8 7 2 28 28 H 1.09000 * 109.62445 * 111.60914 * 8 7 2 29 29 H 1.08993 * 109.42780 * 185.32050 * 9 8 7 30 30 H 1.09004 * 109.53749 * 65.27584 * 9 8 7 31 31 H 0.96997 * 119.99846 * 264.85864 * 12 10 9 32 32 H 1.08995 * 110.37395 * 20.49812 * 16 15 13 33 33 H 1.09002 * 110.37011 * 142.71432 * 16 15 13 34 34 H 1.00895 * 111.00179 * 80.21931 * 17 16 15 35 35 H 1.09000 * 110.41700 * 158.76140 * 18 17 16 36 36 H 1.09001 * 110.42049 * 281.10198 * 18 17 16 37 37 H 1.09008 * 110.71455 * 252.82688 * 21 19 18 38 38 H 1.08997 * 110.71603 * 15.90231 * 21 19 18 39 39 H 1.08998 * 110.67044 * 80.63749 * 22 21 19 40 40 H 1.08995 * 110.67358 * 203.61663 * 22 21 19 41 41 H 1.00902 * 111.00006 * 218.23486 * 23 15 13 42 42 H 1.08996 * 109.47927 * 56.34334 * 24 10 9 43 43 H 1.08999 * 109.48461 * 176.39209 * 24 10 9 44 44 H 1.09000 * 109.62840 * 8.95901 * 25 7 2 45 45 H 1.09002 * 109.62789 * 248.38976 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7039 1.3496 0.1303 5 1 1.9907 2.3385 -1.2723 6 1 1.7952 2.4514 1.1421 7 6 2.0047 -1.1939 0.0005 8 6 1.2890 -2.5028 0.2516 9 6 2.0337 -3.2596 1.3566 10 6 3.5045 -3.4118 0.9656 11 1 3.5727 -3.9118 -0.0007 12 7 4.1972 -4.2127 1.9780 13 6 4.1694 -5.5584 1.9078 14 8 3.5715 -6.1063 1.0061 15 6 4.8767 -6.3822 2.9528 16 6 6.3639 -6.6010 2.6005 17 7 6.4135 -7.9513 1.9846 18 6 5.4662 -8.7576 2.7966 19 6 4.2802 -7.8086 3.0641 20 1 3.4569 -7.9699 2.3683 21 6 3.8489 -7.9476 4.5402 22 6 3.6816 -6.4759 4.9941 23 7 4.7941 -5.7584 4.2911 24 6 4.1602 -2.0331 0.8720 25 6 3.4959 -1.2287 -0.2503 26 1 -0.4850 0.8400 0.0004 27 1 0.2652 -2.3053 0.5692 28 1 1.2835 -3.0980 -0.6616 29 1 1.5875 -4.2458 1.4846 30 1 1.9617 -2.7036 2.2914 31 1 4.6757 -3.7745 2.6990 32 1 6.7002 -5.8469 1.8891 33 1 6.9758 -6.5707 3.5021 34 1 6.1248 -7.9188 1.0184 35 1 5.1346 -9.6322 2.2370 36 1 5.9318 -9.0611 3.7342 37 1 2.9033 -8.4844 4.6167 38 1 4.6227 -8.4478 5.1226 39 1 2.7184 -6.0808 4.6713 40 1 3.7873 -6.3924 6.0757 41 1 5.6585 -5.8751 4.7984 42 1 4.0368 -1.5069 1.8185 43 1 5.2223 -2.1495 0.6562 44 1 3.8902 -0.2125 -0.2551 45 1 3.6948 -1.7060 -1.2099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:59 Heat of formation + Delta-G solvation = -61.037318 kcal Electronic energy + Delta-G solvation = -24905.623018 eV Core-core repulsion = 21534.801553 eV Total energy + Delta-G solvation = -3370.821465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02326 -39.90493 -38.22886 -36.05499 -35.34567 -33.53030 -32.19194 -31.50064 -29.75725 -28.70470 -27.46383 -24.76238 -23.66075 -23.34762 -22.62444 -21.71274 -21.32994 -20.08631 -18.55643 -17.97745 -17.59562 -17.11395 -16.77604 -16.39334 -16.09803 -15.51406 -15.32921 -14.98570 -14.70534 -14.55744 -14.19711 -14.05182 -14.01206 -13.64360 -13.46440 -13.35989 -12.83898 -12.82973 -12.72696 -12.68837 -12.55862 -12.15388 -11.94950 -11.87956 -11.83188 -11.72453 -11.26247 -11.12765 -10.81829 -10.66014 -10.48306 -10.03761 -9.85115 -9.58896 -8.17785 -6.12254 1.41501 1.44494 1.54238 1.57333 2.26429 2.42798 2.85643 3.09629 3.12691 3.55389 3.68361 3.83004 3.97271 4.00068 4.08670 4.20940 4.23736 4.34765 4.43051 4.47050 4.55371 4.68384 4.72359 4.85208 4.85534 4.92435 4.96546 4.97724 4.98751 5.02582 5.15308 5.17808 5.19366 5.27373 5.39057 5.52841 5.55251 5.59990 5.71493 5.76348 5.78174 6.13344 6.32820 6.34683 6.70553 6.92353 7.33872 7.45628 8.93998 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.003863 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.167893 B = 7245.624718 C = 7423.064720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.018 3.982 3 Si 0.942 3.058 4 H -0.227 1.227 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.502 4.502 8 C 0.012 3.988 9 C -0.097 4.097 10 C 0.165 3.835 11 H 0.051 0.949 12 N -0.696 5.696 13 C 0.528 3.472 14 O -0.593 6.593 15 C 0.054 3.946 16 C 0.053 3.947 17 N -0.667 5.667 18 C 0.053 3.947 19 C -0.138 4.138 20 H 0.068 0.932 21 C -0.136 4.136 22 C 0.038 3.962 23 N -0.654 5.654 24 C -0.103 4.103 25 C -0.024 4.024 26 H 0.263 0.737 27 H 0.019 0.981 28 H -0.015 1.015 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.414 0.586 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.337 0.663 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.360 0.640 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.349 -13.876 12.690 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.180 4.180 3 Si 0.767 3.233 4 H -0.151 1.151 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.521 4.521 8 C -0.026 4.026 9 C -0.136 4.136 10 C 0.061 3.939 11 H 0.069 0.931 12 N -0.345 5.345 13 C 0.314 3.686 14 O -0.473 6.473 15 C -0.043 4.043 16 C -0.078 4.078 17 N -0.292 5.292 18 C -0.076 4.076 19 C -0.160 4.160 20 H 0.086 0.914 21 C -0.175 4.175 22 C -0.091 4.091 23 N -0.286 5.286 24 C -0.142 4.142 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.004 0.996 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.179 0.821 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 15.117 -13.741 12.155 23.772 hybrid contribution -1.237 0.585 -0.320 1.405 sum 13.880 -13.157 11.835 22.490 Atomic orbital electron populations 1.70067 1.08212 1.27623 1.51390 1.25761 0.95308 1.02395 0.94510 0.85752 0.81212 0.78931 0.77362 1.15065 1.21200 1.21360 1.20591 0.93007 0.91729 1.46732 1.19266 0.96220 0.94311 0.92812 1.21717 0.95708 0.96813 0.99332 1.20632 0.91299 0.91612 0.90398 0.93106 1.46024 1.53119 1.05743 1.29601 1.20631 0.79400 0.82959 0.85577 1.90669 1.45832 1.72571 1.38227 1.23092 0.98085 0.92407 0.90730 1.23375 0.90743 0.91539 1.02138 1.63331 1.49991 1.09264 1.06644 1.23203 0.89082 0.95683 0.99655 1.23563 0.99940 0.93431 0.99114 0.91363 1.23101 1.03160 0.98113 0.93159 1.23442 0.94698 0.91022 0.99940 1.63174 1.10172 1.54361 1.00873 1.21725 0.98247 0.93536 1.00663 1.19918 0.93905 0.97640 0.94696 0.92816 0.96190 0.99634 0.96160 0.93352 0.74868 0.90738 0.86295 0.84752 0.90237 0.87809 0.90526 0.88172 0.92993 0.87466 0.82051 0.91756 0.91125 0.92775 0.96583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 12.82 21.45 0.28 -55.91 16 2 C 0.02 1.02 5.44 84.65 0.46 1.48 16 3 Si 0.94 41.99 27.95 68.60 1.92 43.90 16 4 H -0.23 -8.98 5.58 99.48 0.56 -8.43 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.50 -26.92 5.48 -16.17 -0.09 -27.00 16 8 C 0.01 0.65 5.93 30.11 0.18 0.83 16 9 C -0.10 -4.48 5.50 30.66 0.17 -4.31 16 10 C 0.17 6.57 2.35 44.96 0.11 6.67 16 11 H 0.05 2.29 7.57 -2.38 -0.02 2.28 16 12 N -0.70 -22.11 5.00 -442.67 -2.21 -24.33 16 13 C 0.53 17.05 6.77 87.66 0.59 17.64 16 14 O -0.59 -24.55 15.45 -3.01 -0.05 -24.59 16 15 C 0.05 1.16 1.10 3.75 0.00 1.16 16 16 C 0.05 0.92 6.70 86.47 0.58 1.50 16 17 N -0.67 -12.35 7.62 -501.27 -3.82 -16.17 16 18 C 0.05 0.85 7.00 86.40 0.61 1.46 16 19 C -0.14 -2.82 3.50 -9.21 -0.03 -2.86 16 20 H 0.07 1.92 7.07 -2.39 -0.02 1.91 16 21 C -0.14 -1.97 6.61 31.73 0.21 -1.76 16 22 C 0.04 0.62 7.55 86.37 0.65 1.27 16 23 N -0.65 -11.04 6.66 -455.52 -3.03 -14.07 16 24 C -0.10 -3.85 5.40 30.66 0.17 -3.68 16 25 C -0.02 -1.06 5.65 30.10 0.17 -0.89 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.02 1.18 7.19 -2.38 -0.02 1.16 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.41 10.96 8.11 -92.71 -0.75 10.21 16 32 H 0.07 1.43 7.88 -2.39 -0.02 1.41 16 33 H 0.12 1.43 7.22 -2.39 -0.02 1.41 16 34 H 0.34 7.20 8.92 -89.70 -0.80 6.40 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.23 7.19 -2.39 -0.02 1.21 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.10 0.93 7.19 -2.39 -0.02 0.92 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.36 3.94 7.73 -89.69 -0.69 3.25 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 2.29 4.36 -2.39 -0.01 2.28 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -69.03 340.45 -4.52 -73.55 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -1.37 Total: 26.10 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.77 Total: -8.48 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -8.79 Total: -110.48 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.92 Total: 43.90 kcal Total: -69.03 -4.52 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.513 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds