Wall clock time and date at job start Tue Mar 31 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00365 * 2 1 4 4 H 1.48497 * 109.47024 * 240.00484 * 3 2 1 5 5 H 1.48506 * 109.46683 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47387 * 120.00316 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.85308 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53726 * 231.32751 * 8 7 2 10 10 C 1.52949 * 109.40399 * 305.36837 * 9 8 7 11 11 H 1.09000 * 109.41326 * 303.56582 * 10 9 8 12 12 N 1.46498 * 109.41726 * 183.70548 * 10 9 8 13 13 C 1.34773 * 120.00638 * 154.85351 * 12 10 9 14 14 O 1.21282 * 119.99765 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00255 * 179.97438 * 13 12 10 16 16 C 1.54389 * 112.51244 * 87.25592 * 15 13 12 17 17 N 1.48506 * 104.81367 * 98.74068 * 16 15 13 18 18 C 1.49502 * 104.53789 * 39.08550 * 17 16 15 19 19 C 1.54235 * 104.09116 * 320.56752 * 18 17 16 20 20 H 1.09006 * 112.26798 * 261.55052 * 19 18 17 21 21 C 1.54415 * 108.98577 * 136.52793 * 19 18 17 22 22 C 1.54912 * 103.14249 * 224.89629 * 21 19 18 23 23 N 1.47884 * 111.76494 * 324.67064 * 15 13 12 24 24 C 1.52963 * 109.76137 * 63.63361 * 10 9 8 25 25 C 1.51273 * 120.85254 * 179.97438 * 7 2 1 26 26 H 0.97005 * 119.99378 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.63063 * 111.60753 * 8 7 2 28 28 H 1.09005 * 109.78038 * 351.13209 * 8 7 2 29 29 H 1.09004 * 109.47920 * 185.38737 * 9 8 7 30 30 H 1.08999 * 109.49352 * 65.35768 * 9 8 7 31 31 H 0.97008 * 119.99752 * 334.86409 * 12 10 9 32 32 H 1.08998 * 110.36951 * 217.57282 * 16 15 13 33 33 H 1.08996 * 110.37137 * 339.79897 * 16 15 13 34 34 H 1.00898 * 111.00034 * 279.78619 * 17 16 15 35 35 H 1.09000 * 110.91813 * 201.81367 * 18 17 16 36 36 H 1.09001 * 110.36220 * 79.04794 * 18 17 16 37 37 H 1.09002 * 110.71165 * 343.35703 * 21 19 18 38 38 H 1.08999 * 110.71498 * 106.43646 * 21 19 18 39 39 H 1.09001 * 110.67002 * 156.31081 * 22 21 19 40 40 H 1.09008 * 110.66575 * 279.44506 * 22 21 19 41 41 H 1.00893 * 111.00543 * 141.76242 * 23 15 13 42 42 H 1.09001 * 109.47798 * 56.34748 * 24 10 9 43 43 H 1.08997 * 109.48146 * 176.38414 * 24 10 9 44 44 H 1.09000 * 109.63211 * 248.38932 * 25 7 2 45 45 H 1.09004 * 109.62486 * 8.96630 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8237 -3.3831 1.1333 10 6 3.3405 -3.5074 0.9810 11 1 3.5738 -3.9111 -0.0042 12 7 3.8613 -4.4084 2.0122 13 6 5.0171 -5.0706 1.8074 14 8 5.6264 -4.9203 0.7696 15 6 5.5530 -5.9969 2.8684 16 6 4.9868 -7.4279 2.7446 17 7 6.0429 -8.1940 2.0352 18 6 7.3259 -7.6830 2.6077 19 6 7.0901 -6.1668 2.7634 20 1 7.5157 -5.5957 1.9381 21 6 7.6374 -5.7113 4.1336 22 6 6.5104 -4.7979 4.6770 23 7 5.2714 -5.4926 4.2298 24 6 3.9902 -2.1310 1.1333 25 6 3.5170 -1.2166 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 1.4191 -3.0189 -0.9552 28 1 0.2029 -2.3437 0.1580 29 1 1.3713 -4.3737 1.0881 30 1 1.5913 -2.9208 2.0927 31 1 3.3740 -4.5284 2.8424 32 1 4.8092 -7.8525 3.7327 33 1 4.0648 -7.4222 2.1635 34 1 6.0054 -8.0259 1.0410 35 1 8.1573 -7.8708 1.9283 36 1 7.5165 -8.1399 3.5788 37 1 7.7909 -6.5670 4.7911 38 1 8.5636 -5.1497 4.0115 39 1 6.5524 -4.7407 5.7647 40 1 6.5749 -3.8033 4.2356 41 1 5.0361 -6.2493 4.8543 42 1 3.7054 -1.6988 2.0926 43 1 5.0743 -2.2338 1.0881 44 1 3.8772 -1.5999 -0.9558 45 1 3.8983 -0.2080 0.1590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:05 Heat of formation + Delta-G solvation = -40.099108 kcal Electronic energy + Delta-G solvation = -24907.353428 eV Core-core repulsion = 21537.439912 eV Total energy + Delta-G solvation = -3369.913516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02154 -38.57288 -36.57098 -35.26375 -33.66418 -31.92303 -31.06524 -29.64887 -28.70345 -27.06832 -26.69646 -23.55561 -22.20924 -21.83502 -21.48174 -20.57604 -19.58056 -18.92013 -17.46832 -16.67635 -16.32952 -15.78962 -15.39928 -15.31901 -14.46620 -14.26317 -14.11406 -13.66889 -13.42842 -13.12561 -12.91959 -12.75258 -12.56492 -12.20411 -12.08540 -12.00337 -11.84762 -11.63067 -11.29866 -11.15665 -10.98964 -10.95636 -10.77935 -10.67688 -10.19674 -10.01167 -9.78398 -9.64944 -9.22621 -8.99493 -8.84823 -8.68227 -8.46552 -8.27095 -6.09879 -4.00352 2.81931 3.30136 3.36513 3.38825 3.53816 3.65288 3.92613 4.37832 4.39820 4.55626 4.61102 4.79189 4.93077 4.99400 5.08745 5.13903 5.18833 5.39848 5.46016 5.53747 5.61158 5.65402 5.75001 5.77616 5.91134 5.93909 6.16666 6.22420 6.40542 6.50475 6.54049 6.73462 6.81654 6.90776 6.97188 6.98952 6.99822 7.07436 7.27577 7.43872 7.64932 7.72341 7.79715 8.03746 8.38788 8.62452 8.96308 9.55334 10.99868 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003966 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.806664 B = 7058.062557 C = 7396.882515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.489 4.489 8 C 0.014 3.986 9 C -0.113 4.113 10 C 0.153 3.847 11 H 0.075 0.925 12 N -0.704 5.704 13 C 0.535 3.465 14 O -0.551 6.551 15 C 0.050 3.950 16 C 0.050 3.950 17 N -0.665 5.665 18 C 0.047 3.953 19 C -0.135 4.135 20 H 0.103 0.897 21 C -0.149 4.149 22 C 0.044 3.956 23 N -0.660 5.660 24 C -0.110 4.110 25 C -0.009 4.009 26 H 0.265 0.735 27 H 0.005 0.995 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.343 0.657 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.019 0.981 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 -13.651 10.403 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.508 4.508 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.050 3.950 11 H 0.094 0.906 12 N -0.352 5.352 13 C 0.319 3.681 14 O -0.428 6.428 15 C -0.047 4.047 16 C -0.081 4.081 17 N -0.291 5.291 18 C -0.082 4.082 19 C -0.157 4.157 20 H 0.122 0.878 21 C -0.188 4.188 22 C -0.085 4.085 23 N -0.291 5.291 24 C -0.149 4.149 25 C -0.047 4.047 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.712 -13.493 9.833 20.394 hybrid contribution 0.961 1.197 0.329 1.570 sum 12.673 -12.296 10.162 20.373 Atomic orbital electron populations 1.69824 1.06118 1.27040 1.49851 1.24822 0.94722 0.98516 0.94510 0.86658 0.79390 0.83015 0.79020 1.20008 1.21857 1.20045 1.20027 0.89286 0.91504 1.49957 1.19331 0.98662 0.92762 0.91667 1.21920 0.92346 0.98562 1.02353 1.21053 0.94507 0.89054 0.90387 0.90637 1.46277 1.23370 1.44334 1.21216 1.19733 0.81338 0.80261 0.86787 1.90683 1.58831 1.65322 1.28011 1.23263 0.95328 0.95618 0.90485 1.23267 0.95994 0.87839 1.01033 1.63525 1.02206 1.53927 1.09424 1.23307 0.92920 0.91086 1.00924 1.23601 0.93945 0.98707 0.99436 0.87849 1.23183 0.99920 1.00155 0.95583 1.23241 0.86695 0.98435 1.00133 1.62506 1.34625 1.30385 1.01556 1.21862 0.97081 0.95269 1.00727 1.19594 0.96629 0.94514 0.93937 0.92537 0.97627 0.92109 0.94667 0.92660 0.76365 0.89115 0.89901 0.83915 0.90356 0.90131 0.91032 0.90639 0.90196 0.89951 0.83830 0.93010 0.94755 0.96213 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.74 55.43 0.71 -24.86 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.89 21.54 26.80 -169.99 -4.56 16.99 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.95 5.51 -98.92 -0.55 -13.50 16 8 C 0.01 0.34 5.96 -27.48 -0.16 0.17 16 9 C -0.11 -2.34 5.40 -26.64 -0.14 -2.48 16 10 C 0.15 3.05 2.35 -67.98 -0.16 2.89 16 11 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 12 N -0.70 -11.53 5.00 -53.85 -0.27 -11.80 16 13 C 0.54 8.61 6.81 -10.99 -0.07 8.53 16 14 O -0.55 -10.85 15.49 5.56 0.09 -10.76 16 15 C 0.05 0.57 1.11 -130.42 -0.14 0.43 16 16 C 0.05 0.51 6.75 -2.21 -0.01 0.49 16 17 N -0.66 -6.85 7.64 -109.04 -0.83 -7.68 16 18 C 0.05 0.43 7.09 -1.73 -0.01 0.42 16 19 C -0.14 -1.44 3.46 -88.17 -0.31 -1.75 16 20 H 0.10 1.39 7.10 -51.93 -0.37 1.02 16 21 C -0.15 -1.25 6.58 -24.98 -0.16 -1.42 16 22 C 0.04 0.41 7.58 -1.69 -0.01 0.39 16 23 N -0.66 -6.47 6.52 -96.07 -0.63 -7.10 16 24 C -0.11 -2.38 5.50 -26.65 -0.15 -2.53 16 25 C -0.01 -0.21 5.59 -27.50 -0.15 -0.36 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 1.63 7.08 -51.93 -0.37 1.26 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.40 5.86 8.09 -40.82 -0.33 5.53 16 32 H 0.09 0.76 7.21 -51.93 -0.37 0.38 16 33 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 34 H 0.34 3.81 8.92 -39.29 -0.35 3.46 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.65 7.19 -51.93 -0.37 0.27 16 37 H 0.07 0.50 7.20 -51.93 -0.37 0.13 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.34 2.64 7.73 -39.30 -0.30 2.34 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -29.72 341.57 -9.76 -39.48 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.28 Total: 7.28 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.14 Total: -6.70 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -1.02 Total: -51.44 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.56 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.72 -9.76 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.615 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds