Wall clock time and date at job start Tue Mar 31 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00365 * 2 1 4 4 H 1.48497 * 109.47024 * 240.00484 * 3 2 1 5 5 H 1.48506 * 109.46683 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47387 * 120.00316 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.85308 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53726 * 231.32751 * 8 7 2 10 10 C 1.52949 * 109.40399 * 305.36837 * 9 8 7 11 11 H 1.09000 * 109.41326 * 303.56582 * 10 9 8 12 12 N 1.46498 * 109.41726 * 183.70548 * 10 9 8 13 13 C 1.34773 * 120.00638 * 154.85351 * 12 10 9 14 14 O 1.21282 * 119.99765 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00255 * 179.97438 * 13 12 10 16 16 C 1.54389 * 112.51244 * 87.25592 * 15 13 12 17 17 N 1.48506 * 104.81367 * 98.74068 * 16 15 13 18 18 C 1.49502 * 104.53789 * 39.08550 * 17 16 15 19 19 C 1.54235 * 104.09116 * 320.56752 * 18 17 16 20 20 H 1.09006 * 112.26798 * 261.55052 * 19 18 17 21 21 C 1.54415 * 108.98577 * 136.52793 * 19 18 17 22 22 C 1.54912 * 103.14249 * 224.89629 * 21 19 18 23 23 N 1.47884 * 111.76494 * 324.67064 * 15 13 12 24 24 C 1.52963 * 109.76137 * 63.63361 * 10 9 8 25 25 C 1.51273 * 120.85254 * 179.97438 * 7 2 1 26 26 H 0.97005 * 119.99378 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.63063 * 111.60753 * 8 7 2 28 28 H 1.09005 * 109.78038 * 351.13209 * 8 7 2 29 29 H 1.09004 * 109.47920 * 185.38737 * 9 8 7 30 30 H 1.08999 * 109.49352 * 65.35768 * 9 8 7 31 31 H 0.97008 * 119.99752 * 334.86409 * 12 10 9 32 32 H 1.08998 * 110.36951 * 217.57282 * 16 15 13 33 33 H 1.08996 * 110.37137 * 339.79897 * 16 15 13 34 34 H 1.00898 * 111.00034 * 279.78619 * 17 16 15 35 35 H 1.09000 * 110.91813 * 201.81367 * 18 17 16 36 36 H 1.09001 * 110.36220 * 79.04794 * 18 17 16 37 37 H 1.09002 * 110.71165 * 343.35703 * 21 19 18 38 38 H 1.08999 * 110.71498 * 106.43646 * 21 19 18 39 39 H 1.09001 * 110.67002 * 156.31081 * 22 21 19 40 40 H 1.09008 * 110.66575 * 279.44506 * 22 21 19 41 41 H 1.00893 * 111.00543 * 141.76242 * 23 15 13 42 42 H 1.09001 * 109.47798 * 56.34748 * 24 10 9 43 43 H 1.08997 * 109.48146 * 176.38414 * 24 10 9 44 44 H 1.09000 * 109.63211 * 248.38932 * 25 7 2 45 45 H 1.09004 * 109.62486 * 8.96630 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8237 -3.3831 1.1333 10 6 3.3405 -3.5074 0.9810 11 1 3.5738 -3.9111 -0.0042 12 7 3.8613 -4.4084 2.0122 13 6 5.0171 -5.0706 1.8074 14 8 5.6264 -4.9203 0.7696 15 6 5.5530 -5.9969 2.8684 16 6 4.9868 -7.4279 2.7446 17 7 6.0429 -8.1940 2.0352 18 6 7.3259 -7.6830 2.6077 19 6 7.0901 -6.1668 2.7634 20 1 7.5157 -5.5957 1.9381 21 6 7.6374 -5.7113 4.1336 22 6 6.5104 -4.7979 4.6770 23 7 5.2714 -5.4926 4.2298 24 6 3.9902 -2.1310 1.1333 25 6 3.5170 -1.2166 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 1.4191 -3.0189 -0.9552 28 1 0.2029 -2.3437 0.1580 29 1 1.3713 -4.3737 1.0881 30 1 1.5913 -2.9208 2.0927 31 1 3.3740 -4.5284 2.8424 32 1 4.8092 -7.8525 3.7327 33 1 4.0648 -7.4222 2.1635 34 1 6.0054 -8.0259 1.0410 35 1 8.1573 -7.8708 1.9283 36 1 7.5165 -8.1399 3.5788 37 1 7.7909 -6.5670 4.7911 38 1 8.5636 -5.1497 4.0115 39 1 6.5524 -4.7407 5.7647 40 1 6.5749 -3.8033 4.2356 41 1 5.0361 -6.2493 4.8543 42 1 3.7054 -1.6988 2.0926 43 1 5.0743 -2.2338 1.0881 44 1 3.8772 -1.5999 -0.9558 45 1 3.8983 -0.2080 0.1590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:05 Heat of formation + Delta-G solvation = -63.819324 kcal Electronic energy + Delta-G solvation = -24908.382014 eV Core-core repulsion = 21537.439912 eV Total energy + Delta-G solvation = -3370.942102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.00665 -39.90519 -38.23129 -36.03967 -35.34168 -33.52658 -32.17690 -31.50876 -29.75689 -28.69062 -27.44290 -24.83605 -23.62835 -23.31705 -22.63517 -21.72800 -21.28784 -20.09406 -18.56170 -17.93699 -17.59063 -17.09640 -16.76843 -16.44499 -16.10050 -15.51607 -15.31427 -14.97671 -14.64749 -14.56821 -14.22047 -14.07865 -13.95453 -13.64778 -13.53318 -13.34453 -12.82064 -12.75987 -12.70867 -12.65961 -12.55744 -12.14825 -12.04080 -11.88618 -11.82095 -11.72293 -11.62883 -11.12156 -10.81263 -10.68800 -10.56225 -10.01606 -9.86122 -9.55600 -8.19770 -6.13740 1.37223 1.38739 1.46534 1.57783 2.25822 2.38612 2.84955 3.08258 3.11727 3.55886 3.69028 3.83270 3.97628 4.01001 4.09225 4.17001 4.24849 4.35454 4.43183 4.45780 4.55973 4.66858 4.73714 4.82299 4.85848 4.91954 4.93040 4.97658 4.98940 5.04036 5.12639 5.15901 5.17903 5.21614 5.41373 5.50408 5.55916 5.60857 5.70658 5.74554 5.80016 6.12982 6.32423 6.37719 6.70490 6.90882 7.32952 7.44343 8.90989 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003966 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.806664 B = 7058.062557 C = 7396.882515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.501 4.501 8 C 0.010 3.990 9 C -0.099 4.099 10 C 0.165 3.835 11 H 0.053 0.947 12 N -0.696 5.696 13 C 0.530 3.470 14 O -0.591 6.591 15 C 0.057 3.943 16 C 0.054 3.946 17 N -0.668 5.668 18 C 0.053 3.947 19 C -0.138 4.138 20 H 0.069 0.931 21 C -0.139 4.139 22 C 0.043 3.957 23 N -0.662 5.662 24 C -0.101 4.101 25 C -0.011 4.011 26 H 0.265 0.735 27 H -0.003 1.003 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.337 0.663 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.361 0.639 42 H 0.053 0.947 43 H 0.034 0.966 44 H 0.013 0.987 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -15.035 12.814 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.520 4.520 8 C -0.028 4.028 9 C -0.137 4.137 10 C 0.061 3.939 11 H 0.072 0.928 12 N -0.345 5.345 13 C 0.316 3.684 14 O -0.471 6.471 15 C -0.040 4.040 16 C -0.077 4.077 17 N -0.293 5.293 18 C -0.077 4.077 19 C -0.160 4.160 20 H 0.088 0.912 21 C -0.178 4.178 22 C -0.086 4.086 23 N -0.295 5.295 24 C -0.140 4.140 25 C -0.049 4.049 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.182 0.818 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.032 0.968 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 13.146 -14.902 12.287 23.364 hybrid contribution 0.519 1.590 -0.475 1.738 sum 13.665 -13.312 11.812 22.438 Atomic orbital electron populations 1.69937 1.07396 1.27624 1.51601 1.25514 0.95357 1.01445 0.94728 0.85860 0.78447 0.79791 0.79294 1.19698 1.21563 1.19127 1.20546 0.90608 0.92134 1.48716 1.19291 0.97330 0.93281 0.92928 1.21683 0.92739 0.98914 1.00407 1.20622 0.93923 0.88827 0.90543 0.92849 1.46043 1.23824 1.43829 1.20822 1.20580 0.80461 0.80049 0.87318 1.90664 1.59743 1.66598 1.30086 1.23053 0.95777 0.95096 0.90059 1.23335 0.95424 0.86728 1.02205 1.63588 1.02885 1.53816 1.09031 1.23369 0.92481 0.89781 1.02023 1.23562 0.93139 0.99570 0.99735 0.91247 1.23155 0.99477 1.00825 0.94332 1.23247 0.86682 0.97146 1.01519 1.62360 1.35143 1.31119 1.00892 1.21722 0.97050 0.95679 0.99562 1.19598 0.95281 0.95298 0.94690 0.92617 0.98478 0.94633 0.92274 0.92574 0.74956 0.86400 0.90875 0.84822 0.90014 0.87949 0.88435 0.90495 0.87548 0.92675 0.81831 0.92866 0.94759 0.96849 0.95531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 12.74 21.45 0.27 -53.90 16 2 C 0.03 1.58 5.46 84.65 0.46 2.04 16 3 Si 0.94 44.22 26.80 68.60 1.84 46.06 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.50 -26.83 5.51 -16.17 -0.09 -26.92 16 8 C 0.01 0.49 5.96 30.11 0.18 0.67 16 9 C -0.10 -4.04 5.40 30.66 0.17 -3.87 16 10 C 0.17 6.55 2.35 44.96 0.11 6.65 16 11 H 0.05 2.38 7.57 -2.39 -0.02 2.36 16 12 N -0.70 -22.10 5.00 -442.68 -2.21 -24.31 16 13 C 0.53 16.73 6.81 87.66 0.60 17.33 16 14 O -0.59 -23.60 15.49 -3.04 -0.05 -23.65 16 15 C 0.06 1.21 1.11 3.75 0.00 1.21 16 16 C 0.05 0.96 6.75 86.46 0.58 1.54 16 17 N -0.67 -12.38 7.64 -498.90 -3.81 -16.19 16 18 C 0.05 0.83 7.09 86.21 0.61 1.44 16 19 C -0.14 -2.71 3.46 -9.21 -0.03 -2.75 16 20 H 0.07 1.87 7.10 -2.38 -0.02 1.85 16 21 C -0.14 -1.92 6.58 31.73 0.21 -1.71 16 22 C 0.04 0.67 7.58 86.56 0.66 1.33 16 23 N -0.66 -11.00 6.52 -457.86 -2.98 -13.99 16 24 C -0.10 -4.33 5.50 30.65 0.17 -4.17 16 25 C -0.01 -0.51 5.59 30.10 0.17 -0.34 16 26 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.03 1.95 7.08 -2.38 -0.02 1.93 16 29 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.41 11.26 8.09 -92.70 -0.75 10.51 16 32 H 0.12 1.47 7.21 -2.39 -0.02 1.46 16 33 H 0.07 1.45 7.90 -2.39 -0.02 1.43 16 34 H 0.34 7.15 8.92 -89.70 -0.80 6.35 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.20 7.19 -2.39 -0.02 1.18 16 37 H 0.10 0.89 7.20 -2.39 -0.02 0.87 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.36 4.02 7.73 -89.70 -0.69 3.32 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.03 1.25 5.17 -2.38 -0.01 1.24 16 Total: -1.00 -65.58 341.57 -4.37 -69.96 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -1.22 Total: 23.58 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.79 Total: -7.55 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -8.74 Total: -108.39 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.84 Total: 46.06 kcal Total: -65.58 -4.37 -69.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.137 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds