Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99739 * 2 1 4 4 C 1.50702 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.34515 * 125.78200 * 90.00460 * 4 3 2 6 6 C 1.41390 * 106.83657 * 180.02562 * 5 4 3 7 7 C 1.34517 * 106.84055 * 0.22362 * 6 5 4 8 8 C 1.50697 * 125.78777 * 179.76899 * 7 6 5 9 9 N 1.46904 * 109.46656 * 61.30565 * 8 7 6 10 10 C 1.46905 * 110.99707 * 185.97349 * 9 8 7 11 11 C 1.50703 * 109.47135 * 163.16064 * 10 9 8 12 12 H 1.07992 * 119.99773 * 4.57841 * 11 10 9 13 13 C 1.37878 * 119.99640 * 184.57733 * 11 10 9 14 14 N 1.31504 * 120.00321 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99532 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47409 * 90.00144 * 15 13 11 17 17 H 1.48499 * 109.47233 * 210.00252 * 15 13 11 18 18 H 1.48504 * 109.47285 * 329.99942 * 15 13 11 19 19 C 1.46900 * 111.00406 * 62.02157 * 9 8 7 20 20 C 1.54265 * 110.03109 * 33.89169 * 19 9 8 21 21 C 1.54967 * 104.15808 * 217.13798 * 20 19 9 22 22 C 1.54890 * 102.77617 * 37.88870 * 21 20 19 23 23 C 1.53870 * 110.02757 * 276.67401 * 19 9 8 24 24 O 1.34303 * 125.79188 * 270.02974 * 4 3 2 25 25 H 1.08996 * 109.47177 * 59.99945 * 1 2 3 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46869 * 299.99244 * 1 2 3 28 28 H 1.09000 * 109.46963 * 60.00210 * 3 2 1 29 29 H 1.08998 * 109.47655 * 300.00330 * 3 2 1 30 30 H 1.08000 * 126.58837 * 359.97438 * 5 4 3 31 31 H 1.07997 * 126.57928 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47055 * 181.29754 * 8 7 6 33 33 H 1.08991 * 109.47464 * 301.30086 * 8 7 6 34 34 H 1.09002 * 109.47297 * 283.16556 * 10 9 8 35 35 H 1.09001 * 109.47060 * 43.16163 * 10 9 8 36 36 H 0.97001 * 120.00139 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.01514 * 155.28732 * 19 9 8 38 38 H 1.08998 * 110.48562 * 335.78463 * 20 19 9 39 39 H 1.08996 * 110.48582 * 98.43331 * 20 19 9 40 40 H 1.09002 * 110.71947 * 279.57327 * 21 20 19 41 41 H 1.08998 * 110.92294 * 156.29803 * 21 20 19 42 42 H 1.08999 * 110.48812 * 203.40308 * 22 21 20 43 43 H 1.09001 * 110.59741 * 80.81646 * 22 21 20 44 44 H 1.08996 * 110.03376 * 238.56874 * 23 19 9 45 45 H 1.08998 * 110.04045 * 359.95227 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2970 1.1243 -1.0903 6 6 5.6299 1.0182 -0.6307 7 6 5.5797 1.0169 0.7136 8 6 6.7642 0.9156 1.6396 9 7 7.6562 2.0622 1.4207 10 6 8.8914 1.9253 2.2041 11 6 9.9367 2.8660 1.6623 12 1 9.6847 3.5541 0.8691 13 6 11.2147 2.8480 2.1795 14 7 11.5216 2.0097 3.1451 15 14 12.5102 4.0145 1.5084 16 1 12.4825 5.2824 2.2809 17 1 13.8513 3.3889 1.6319 18 1 12.2268 4.2996 0.0788 19 6 6.9744 3.3262 1.7295 20 6 5.9853 3.1219 2.8956 21 6 4.7756 4.0180 2.5279 22 6 4.6737 3.8427 0.9924 23 6 6.1411 3.7846 0.5199 24 8 4.2950 1.1242 1.0904 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.9714 1.1497 -2.1197 31 1 6.5177 0.9473 -1.2416 32 1 6.4184 0.9166 2.6733 33 1 7.3049 -0.0090 1.4382 34 1 8.6890 2.1687 3.2471 35 1 9.2542 0.8998 2.1342 36 1 12.4208 1.9968 3.5086 37 1 7.7062 4.0908 1.9901 38 1 5.6808 2.0773 2.9589 39 1 6.4309 3.4480 3.8353 40 1 4.9739 5.0584 2.7857 41 1 3.8677 3.6665 3.0180 42 1 4.1621 4.6945 0.5443 43 1 4.1565 2.9154 0.7458 44 1 6.4678 4.7721 0.1941 45 1 6.2432 3.0697 -0.2965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231690747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -2.664471 kcal Electronic energy + Delta-G solvation = -24963.873903 eV Core-core repulsion = 21563.290924 eV Total energy + Delta-G solvation = -3400.582979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.71679 -38.60897 -37.97224 -34.71017 -32.87783 -32.62123 -31.11410 -28.67217 -28.10096 -27.40533 -26.57476 -25.17975 -23.42236 -21.72064 -21.35206 -20.28552 -20.06237 -18.55364 -17.23731 -16.71356 -16.30554 -16.07356 -15.92108 -15.23101 -15.09058 -14.87121 -14.46131 -13.83972 -13.66736 -13.06277 -12.80057 -12.75822 -12.60553 -12.46325 -12.06352 -11.82304 -11.75290 -11.66654 -11.35663 -10.91514 -10.89635 -10.74186 -10.65724 -10.56890 -10.31789 -10.11291 -10.00162 -9.84977 -9.74667 -9.37407 -9.27350 -8.43846 -7.94444 -7.27138 -6.03054 -4.03994 1.81808 2.78140 3.04666 3.32181 3.38593 3.43276 3.86703 4.42945 4.70853 4.86048 4.93178 5.00213 5.08384 5.09203 5.14296 5.21354 5.29857 5.32307 5.34152 5.37645 5.46222 5.70585 5.92336 5.98476 6.04121 6.07109 6.10809 6.16554 6.20086 6.28592 6.35018 6.38332 6.39462 6.53946 6.76459 6.81081 6.82566 6.85848 6.95288 7.19594 7.32762 7.46830 7.80749 8.06546 8.19424 8.49714 9.03536 9.59999 11.07580 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003870 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.792381 B = 7233.280069 C = 7455.407316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.147 3.853 4 C -0.040 4.040 5 C -0.175 4.175 6 C -0.199 4.199 7 C 0.034 3.966 8 C 0.118 3.882 9 N -0.519 5.519 10 C 0.193 3.807 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.088 3.912 20 C -0.168 4.168 21 C -0.114 4.114 22 C -0.147 4.147 23 C -0.123 4.123 24 O -0.168 6.168 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.054 0.946 33 H 0.097 0.903 34 H -0.007 1.007 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.016 -0.648 -5.394 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.071 3.929 4 C -0.089 4.089 5 C -0.195 4.195 6 C -0.219 4.219 7 C -0.017 4.017 8 C -0.009 4.009 9 N -0.243 5.243 10 C 0.068 3.932 11 C -0.542 4.542 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.022 4.022 20 C -0.206 4.206 21 C -0.152 4.152 22 C -0.184 4.184 23 C -0.161 4.161 24 O -0.065 6.065 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.011 0.989 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.695 -0.860 -5.483 20.462 hybrid contribution 0.475 0.907 0.409 1.102 sum -19.220 0.047 -5.074 19.879 Atomic orbital electron populations 1.22767 0.80670 1.03027 1.00088 1.88011 1.19760 1.27301 1.95442 1.20622 0.85148 0.85336 1.01812 1.21406 0.92029 1.10657 0.84830 1.21568 0.93094 1.05972 0.98861 1.21454 0.97576 1.08724 0.94102 1.22498 0.82339 1.01757 0.95117 1.20748 0.88183 0.97111 0.94893 1.62438 1.04841 0.99057 1.57996 1.19778 0.84517 0.98187 0.90668 1.21118 0.94282 1.19412 1.19352 0.91814 1.24965 0.98466 0.95962 0.95162 1.69948 1.20379 1.36913 1.26628 0.86509 0.80777 0.80757 0.79457 1.20802 1.21295 1.19752 1.22276 0.94473 0.93274 0.92135 1.23255 0.96848 1.00977 0.99544 1.22320 0.97556 0.99153 0.96173 1.22875 0.97962 1.02062 0.95493 1.22447 0.93340 1.01059 0.99235 1.84016 1.17047 1.70570 1.34833 0.93889 0.89406 0.93874 0.91762 0.90335 0.83906 0.83098 0.92829 0.88482 0.98884 0.94849 0.92925 0.89231 0.90234 0.92211 0.92343 0.92788 0.93258 0.89851 0.93001 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.50 10.69 -35.23 -0.38 -4.87 16 3 C 0.15 1.57 6.47 36.01 0.23 1.80 16 4 C -0.04 -0.55 4.85 -35.62 -0.17 -0.73 16 5 C -0.18 -2.41 10.70 -39.70 -0.42 -2.83 16 6 C -0.20 -3.11 8.38 -39.70 -0.33 -3.44 16 7 C 0.03 0.56 3.69 -35.63 -0.13 0.43 16 8 C 0.12 2.14 4.96 -4.98 -0.02 2.12 16 9 N -0.52 -10.82 4.30 -228.18 -0.98 -11.81 16 10 C 0.19 4.85 4.68 -4.97 -0.02 4.83 16 11 C -0.50 -13.85 8.40 -34.44 -0.29 -14.14 16 12 H 0.06 1.76 7.75 -52.49 -0.41 1.35 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.09 1.69 2.68 -66.60 -0.18 1.51 16 20 C -0.17 -2.90 5.74 -25.03 -0.14 -3.05 16 21 C -0.11 -1.70 6.91 -24.70 -0.17 -1.87 16 22 C -0.15 -2.19 6.17 -25.07 -0.15 -2.35 16 23 C -0.12 -2.11 5.68 -25.61 -0.15 -2.26 16 24 O -0.17 -2.66 8.48 5.70 0.05 -2.61 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 32 H 0.05 0.96 5.58 -51.93 -0.29 0.67 16 33 H 0.10 1.71 7.95 -51.93 -0.41 1.30 16 34 H -0.01 -0.18 8.02 -51.93 -0.42 -0.59 16 35 H 0.03 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.96 7.11 -51.93 -0.37 1.59 16 38 H 0.08 1.39 3.89 -51.93 -0.20 1.19 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.23 2.39 -51.93 -0.12 1.10 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.49 4.77 -51.93 -0.25 1.25 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -30.04 344.55 -8.43 -38.48 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.09 Total: 1.88 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.94 Total: -17.18 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.25 Total: -37.41 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.33 Total: -7.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.04 -8.43 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231690747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.811 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds