Wall clock time and date at job start Tue Mar 31 2020 06:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99739 * 2 1 4 4 C 1.50702 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.34515 * 125.78200 * 90.00460 * 4 3 2 6 6 C 1.41390 * 106.83657 * 180.02562 * 5 4 3 7 7 C 1.34517 * 106.84055 * 0.22362 * 6 5 4 8 8 C 1.50697 * 125.78777 * 179.76899 * 7 6 5 9 9 N 1.46904 * 109.46656 * 61.30565 * 8 7 6 10 10 C 1.46905 * 110.99707 * 185.97349 * 9 8 7 11 11 C 1.50703 * 109.47135 * 163.16064 * 10 9 8 12 12 H 1.07992 * 119.99773 * 4.57841 * 11 10 9 13 13 C 1.37878 * 119.99640 * 184.57733 * 11 10 9 14 14 N 1.31504 * 120.00321 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99532 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47409 * 90.00144 * 15 13 11 17 17 H 1.48499 * 109.47233 * 210.00252 * 15 13 11 18 18 H 1.48504 * 109.47285 * 329.99942 * 15 13 11 19 19 C 1.46900 * 111.00406 * 62.02157 * 9 8 7 20 20 C 1.54265 * 110.03109 * 33.89169 * 19 9 8 21 21 C 1.54967 * 104.15808 * 217.13798 * 20 19 9 22 22 C 1.54890 * 102.77617 * 37.88870 * 21 20 19 23 23 C 1.53870 * 110.02757 * 276.67401 * 19 9 8 24 24 O 1.34303 * 125.79188 * 270.02974 * 4 3 2 25 25 H 1.08996 * 109.47177 * 59.99945 * 1 2 3 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46869 * 299.99244 * 1 2 3 28 28 H 1.09000 * 109.46963 * 60.00210 * 3 2 1 29 29 H 1.08998 * 109.47655 * 300.00330 * 3 2 1 30 30 H 1.08000 * 126.58837 * 359.97438 * 5 4 3 31 31 H 1.07997 * 126.57928 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47055 * 181.29754 * 8 7 6 33 33 H 1.08991 * 109.47464 * 301.30086 * 8 7 6 34 34 H 1.09002 * 109.47297 * 283.16556 * 10 9 8 35 35 H 1.09001 * 109.47060 * 43.16163 * 10 9 8 36 36 H 0.97001 * 120.00139 * 179.97438 * 14 13 11 37 37 H 1.09001 * 110.01514 * 155.28732 * 19 9 8 38 38 H 1.08998 * 110.48562 * 335.78463 * 20 19 9 39 39 H 1.08996 * 110.48582 * 98.43331 * 20 19 9 40 40 H 1.09002 * 110.71947 * 279.57327 * 21 20 19 41 41 H 1.08998 * 110.92294 * 156.29803 * 21 20 19 42 42 H 1.08999 * 110.48812 * 203.40308 * 22 21 20 43 43 H 1.09001 * 110.59741 * 80.81646 * 22 21 20 44 44 H 1.08996 * 110.03376 * 238.56874 * 23 19 9 45 45 H 1.08998 * 110.04045 * 359.95227 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2970 1.1243 -1.0903 6 6 5.6299 1.0182 -0.6307 7 6 5.5797 1.0169 0.7136 8 6 6.7642 0.9156 1.6396 9 7 7.6562 2.0622 1.4207 10 6 8.8914 1.9253 2.2041 11 6 9.9367 2.8660 1.6623 12 1 9.6847 3.5541 0.8691 13 6 11.2147 2.8480 2.1795 14 7 11.5216 2.0097 3.1451 15 14 12.5102 4.0145 1.5084 16 1 12.4825 5.2824 2.2809 17 1 13.8513 3.3889 1.6319 18 1 12.2268 4.2996 0.0788 19 6 6.9744 3.3262 1.7295 20 6 5.9853 3.1219 2.8956 21 6 4.7756 4.0180 2.5279 22 6 4.6737 3.8427 0.9924 23 6 6.1411 3.7846 0.5199 24 8 4.2950 1.1242 1.0904 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.9714 1.1497 -2.1197 31 1 6.5177 0.9473 -1.2416 32 1 6.4184 0.9166 2.6733 33 1 7.3049 -0.0090 1.4382 34 1 8.6890 2.1687 3.2471 35 1 9.2542 0.8998 2.1342 36 1 12.4208 1.9968 3.5086 37 1 7.7062 4.0908 1.9901 38 1 5.6808 2.0773 2.9589 39 1 6.4309 3.4480 3.8353 40 1 4.9739 5.0584 2.7857 41 1 3.8677 3.6665 3.0180 42 1 4.1621 4.6945 0.5443 43 1 4.1565 2.9154 0.7458 44 1 6.4678 4.7721 0.1941 45 1 6.2432 3.0697 -0.2965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231690747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:07 Heat of formation + Delta-G solvation = -20.953794 kcal Electronic energy + Delta-G solvation = -24964.666988 eV Core-core repulsion = 21563.290924 eV Total energy + Delta-G solvation = -3401.376064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.89648 -40.08161 -38.74244 -36.27567 -34.68179 -33.95363 -32.38201 -30.03641 -29.48421 -28.94369 -27.56454 -26.50036 -24.75704 -23.48537 -22.59414 -21.56019 -21.25261 -20.03991 -18.59838 -18.10479 -17.64402 -17.29315 -16.80298 -16.60096 -16.54127 -16.18788 -15.98408 -15.39823 -14.64843 -14.48039 -14.38865 -14.12441 -13.72343 -13.61758 -13.49870 -13.33058 -12.97605 -12.77882 -12.77312 -12.64650 -12.36449 -12.24938 -12.20438 -11.91520 -11.86565 -11.60117 -11.44866 -11.37990 -11.21210 -10.68858 -10.60137 -10.51850 -9.15632 -8.99005 -8.19332 -6.28657 0.69684 1.40746 1.41807 1.53344 1.63237 1.91697 2.41111 3.07073 3.12511 3.34493 3.71939 3.80324 3.84049 3.98488 4.04154 4.18037 4.24696 4.30699 4.43630 4.51275 4.56935 4.61138 4.62421 4.64179 4.71049 4.80586 4.88681 4.90631 4.93187 4.98285 5.08408 5.13089 5.16329 5.18938 5.22865 5.25441 5.42429 5.51232 5.55588 5.66621 5.68259 6.04894 6.16081 6.27014 6.40943 6.57975 6.86135 7.40227 8.91126 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003870 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.792381 B = 7233.280069 C = 7455.407316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.145 3.855 4 C -0.034 4.034 5 C -0.179 4.179 6 C -0.199 4.199 7 C 0.015 3.985 8 C 0.121 3.879 9 N -0.522 5.522 10 C 0.210 3.790 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.084 3.916 20 C -0.166 4.166 21 C -0.107 4.107 22 C -0.139 4.139 23 C -0.118 4.118 24 O -0.177 6.177 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.093 0.907 34 H -0.034 1.034 35 H 0.010 0.990 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.370 0.437 -6.879 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.070 3.930 4 C -0.083 4.083 5 C -0.198 4.198 6 C -0.219 4.219 7 C -0.036 4.036 8 C -0.007 4.007 9 N -0.246 5.246 10 C 0.084 3.916 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.024 4.024 20 C -0.204 4.204 21 C -0.145 4.145 22 C -0.176 4.176 23 C -0.156 4.156 24 O -0.075 6.075 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.187 0.813 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.111 0.889 34 H -0.016 1.016 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.079 0.228 -6.977 23.156 hybrid contribution 1.112 0.514 0.867 1.501 sum -20.966 0.742 -6.109 21.851 Atomic orbital electron populations 1.22981 0.78537 1.04061 1.01484 1.87952 1.22096 1.27814 1.95747 1.20856 0.82839 0.85515 1.03837 1.22155 0.93509 1.08542 0.84127 1.21821 0.91851 1.05869 1.00266 1.21555 0.98601 1.07937 0.93757 1.21974 0.82355 1.04412 0.94853 1.20615 0.88728 0.95778 0.95548 1.62346 1.04507 1.00827 1.56947 1.19390 0.86392 0.96184 0.89638 1.21389 0.95218 1.19693 1.19235 0.92262 1.25840 1.00692 0.97559 0.95332 1.70068 1.21033 1.38472 1.27825 0.85433 0.77873 0.78621 0.79007 1.20003 1.20695 1.19021 1.22278 0.94288 0.91547 0.94331 1.23195 0.97549 1.01582 0.98073 1.22306 0.96817 0.98944 0.96394 1.22840 0.96188 1.03295 0.95267 1.22384 0.94703 1.00673 0.97836 1.83999 1.16694 1.70864 1.35911 0.92043 0.88696 0.92873 0.90646 0.87337 0.81309 0.83675 0.92940 0.88890 1.01599 0.97213 0.92702 0.92579 0.90407 0.93533 0.91574 0.90927 0.90980 0.89392 0.92911 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.51 10.69 -148.98 -1.59 -10.10 16 3 C 0.15 2.58 6.47 71.24 0.46 3.04 16 4 C -0.03 -0.86 4.85 24.83 0.12 -0.74 16 5 C -0.18 -4.47 10.70 22.19 0.24 -4.24 16 6 C -0.20 -6.06 8.38 22.19 0.19 -5.87 16 7 C 0.01 0.48 3.69 24.83 0.09 0.57 16 8 C 0.12 4.54 4.96 85.56 0.42 4.97 16 9 N -0.52 -22.76 4.30 -875.82 -3.77 -26.53 16 10 C 0.21 11.17 4.68 85.56 0.40 11.57 16 11 C -0.52 -29.50 8.40 25.60 0.22 -29.29 16 12 H 0.06 3.36 7.75 -2.91 -0.02 3.34 16 13 C 0.00 0.22 5.46 84.66 0.46 0.68 16 14 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 15 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.08 3.36 2.68 45.64 0.12 3.48 16 20 C -0.17 -5.80 5.74 31.70 0.18 -5.62 16 21 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 22 C -0.14 -3.80 6.17 31.67 0.20 -3.60 16 23 C -0.12 -3.97 5.68 31.32 0.18 -3.79 16 24 O -0.18 -5.36 8.48 -2.51 -0.02 -5.38 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.05 1.97 5.58 -2.39 -0.01 1.96 16 33 H 0.09 3.48 7.95 -2.39 -0.02 3.46 16 34 H -0.03 -1.93 8.02 -2.39 -0.02 -1.95 16 35 H 0.01 0.56 7.85 -2.39 -0.02 0.54 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.06 2.57 7.11 -2.39 -0.02 2.56 16 38 H 0.08 2.76 3.89 -2.39 -0.01 2.75 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.35 2.39 -2.39 -0.01 2.34 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.74 4.77 -2.39 -0.01 2.72 16 Total: -1.00 -66.24 344.55 2.65 -63.60 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.97 Total: 17.66 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.74 Total: -30.06 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.48 Total: -82.51 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.61 Total: -15.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.24 2.65 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231690747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.645 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds