Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47318 * 2 1 4 4 C 1.35981 * 117.00275 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.99743 * 359.72280 * 4 3 2 6 6 C 1.38113 * 119.99732 * 179.71882 * 5 4 3 7 7 C 1.38722 * 119.99705 * 0.55981 * 6 5 4 8 8 O 1.35979 * 119.99670 * 179.69952 * 7 6 5 9 9 C 1.42897 * 117.00329 * 0.02562 * 8 7 6 10 10 C 1.38673 * 120.00257 * 359.71673 * 7 6 5 11 11 C 1.38153 * 119.99941 * 0.02562 * 10 7 6 12 12 C 1.50700 * 119.99896 * 179.97438 * 11 10 7 13 13 N 1.46907 * 109.46776 * 260.01631 * 12 11 10 14 14 C 1.46902 * 110.99934 * 66.04613 * 13 12 11 15 15 C 1.53004 * 109.47121 * 63.28622 * 14 13 12 16 16 C 1.46905 * 110.99795 * 190.00212 * 13 12 11 17 17 C 1.50703 * 109.46858 * 169.60338 * 16 13 12 18 18 H 1.07994 * 120.00194 * 354.96280 * 17 16 13 19 19 C 1.37876 * 119.99967 * 174.96325 * 17 16 13 20 20 N 1.31518 * 119.99823 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 90.00328 * 21 19 17 23 23 H 1.48505 * 109.47251 * 210.00014 * 21 19 17 24 24 H 1.48502 * 109.47313 * 330.00398 * 21 19 17 25 25 H 1.08998 * 109.46738 * 299.99578 * 1 2 3 26 26 H 1.08993 * 109.47105 * 59.99631 * 1 2 3 27 27 H 1.08995 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47472 * 239.99851 * 2 1 3 29 29 H 1.09003 * 109.47410 * 119.99939 * 2 1 3 30 30 H 1.07999 * 119.99786 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.99670 * 180.25751 * 6 5 4 32 32 H 1.08997 * 109.47750 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47074 * 300.00229 * 9 8 7 34 34 H 1.09001 * 109.47349 * 59.99655 * 9 8 7 35 35 H 1.07995 * 120.00185 * 180.02562 * 10 7 6 36 36 H 1.08999 * 109.47599 * 20.01662 * 12 11 10 37 37 H 1.09000 * 109.47525 * 140.01768 * 12 11 10 38 38 H 1.08998 * 109.46740 * 183.27920 * 14 13 12 39 39 H 1.09000 * 109.46871 * 303.28655 * 14 13 12 40 40 H 1.08997 * 109.47124 * 180.63412 * 15 14 13 41 41 H 1.09004 * 109.46970 * 300.63180 * 15 14 13 42 42 H 1.09001 * 109.47062 * 60.62777 * 15 14 13 43 43 H 1.08999 * 109.46525 * 289.59716 * 16 13 12 44 44 H 1.08994 * 109.47470 * 49.60081 * 16 13 12 45 45 H 0.97000 * 119.99947 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1995 0.4253 0.0048 6 6 5.5687 0.6062 -0.0017 7 6 6.0989 1.8881 -0.0017 8 8 7.4470 2.0663 -0.0018 9 6 8.2570 0.8891 -0.0025 10 6 5.2542 2.9879 -0.0012 11 6 3.8846 2.8069 -0.0001 12 6 2.9666 4.0020 0.0010 13 7 2.4790 4.2436 1.3656 14 6 3.5778 4.6460 2.2537 15 6 4.1620 5.9755 1.7721 16 6 1.4040 5.2448 1.3710 17 6 0.7585 5.2814 2.7322 18 1 1.0555 4.5715 3.4900 19 6 -0.2114 6.2210 3.0102 20 7 -0.5735 7.0852 2.0873 21 14 -1.0121 6.2659 4.6972 22 1 -0.2371 7.1652 5.5893 23 1 -2.4028 6.7715 4.5719 24 1 -1.0331 4.8967 5.2719 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.7867 -0.5727 0.0089 31 1 6.2266 -0.2503 -0.0018 32 1 9.3096 1.1721 -0.0021 33 1 8.0398 0.2980 0.8872 34 1 8.0395 0.2988 -0.8927 35 1 5.6669 3.9859 -0.0016 36 1 3.5107 4.8785 -0.3509 37 1 2.1202 3.8108 -0.6587 38 1 3.1999 4.7619 3.2695 39 1 4.3546 3.8815 2.2399 40 1 4.9846 6.2685 2.4244 41 1 4.5296 5.8627 0.7521 42 1 3.3880 6.7426 1.7965 43 1 1.8199 6.2255 1.1396 44 1 0.6577 4.9807 0.6219 45 1 -1.2562 7.7460 2.2827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232384171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = -45.593913 kcal Electronic energy + Delta-G solvation = -24320.041198 eV Core-core repulsion = 20917.596659 eV Total energy + Delta-G solvation = -3402.444540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38324 -38.85579 -37.39721 -35.93515 -32.65227 -31.76515 -31.22638 -29.67506 -28.92027 -27.07841 -26.82470 -24.55692 -23.82683 -22.99603 -21.47898 -21.07996 -19.25141 -17.81175 -17.37814 -16.52160 -16.08635 -15.94112 -15.61987 -14.88301 -14.77639 -14.66132 -14.12612 -14.05346 -13.45135 -13.29973 -13.06090 -12.69787 -12.58352 -12.37371 -12.25879 -12.10826 -11.80697 -11.53475 -11.42130 -11.24091 -11.10106 -11.00842 -10.74168 -10.69461 -10.51639 -10.32372 -10.16455 -9.93398 -9.63950 -9.12376 -8.70438 -8.34403 -7.48500 -7.00490 -5.93977 -3.93890 1.40456 1.68128 3.30688 3.36494 3.42541 3.47332 3.53628 3.88304 4.50580 4.77713 4.86205 5.00242 5.03824 5.05266 5.15437 5.24431 5.28396 5.33026 5.35310 5.41324 5.51706 5.59446 5.72473 5.87293 5.95683 5.96011 6.00646 6.12054 6.19136 6.25224 6.30192 6.39742 6.43232 6.59074 6.61806 6.82648 6.86565 7.04909 7.42165 7.45274 7.55392 7.77084 7.91883 8.22485 8.34832 8.68318 9.14514 9.69484 11.16704 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.004638 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.715628 B = 6035.727515 C = 7306.306190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.291 6.291 4 C 0.121 3.879 5 C -0.179 4.179 6 C -0.176 4.176 7 C 0.083 3.917 8 O -0.320 6.320 9 C 0.030 3.970 10 C -0.107 4.107 11 C -0.055 4.055 12 C 0.096 3.904 13 N -0.522 5.522 14 C 0.060 3.940 15 C -0.188 4.188 16 C 0.190 3.810 17 C -0.498 4.498 18 H 0.061 0.939 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.894 3.106 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.002 0.998 44 H 0.025 0.975 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.356 -14.731 -6.143 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.205 6.205 4 C 0.075 3.925 5 C -0.197 4.197 6 C -0.195 4.195 7 C 0.038 3.962 8 O -0.234 6.234 9 C -0.065 4.065 10 C -0.126 4.126 11 C -0.056 4.056 12 C -0.032 4.032 13 N -0.245 5.245 14 C -0.068 4.068 15 C -0.247 4.247 16 C 0.065 3.935 17 C -0.537 4.537 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.722 3.278 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.020 0.980 44 H 0.043 0.957 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.945 -14.703 -5.992 19.869 hybrid contribution 0.021 0.260 0.620 0.673 sum 11.967 -14.443 -5.372 19.510 Atomic orbital electron populations 1.21743 0.92817 1.02121 1.04203 1.22693 0.96071 0.82759 1.00360 1.86284 1.18168 1.27780 1.88226 1.18658 0.82813 0.93040 0.97987 1.20952 0.93391 0.98003 1.07402 1.20867 0.95486 0.95686 1.07430 1.18786 0.82505 0.93544 1.01334 1.86062 1.14567 1.33151 1.89643 1.22959 0.94868 0.87698 1.00978 1.20164 0.90882 0.97733 1.03860 1.19150 0.92571 0.93286 1.00640 1.20878 0.96384 0.92292 0.93627 1.62345 1.09417 1.47637 1.05131 1.21967 0.92759 0.93504 0.98600 1.22393 1.01085 1.01162 1.00081 1.19778 0.87894 0.88081 0.97743 1.21150 1.19857 1.14786 0.97924 0.92034 1.24960 0.97005 0.95649 0.97006 1.69963 1.31662 1.19168 1.33266 0.86558 0.78530 0.78207 0.84468 1.20861 1.21383 1.19863 0.90849 0.91598 0.91037 0.92945 0.92567 0.85633 0.85832 0.88653 0.92989 0.93067 0.84932 0.94581 0.90194 0.90388 0.93007 0.93590 0.93756 0.91222 0.97991 0.95693 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.38 16 2 C 0.06 0.71 5.46 37.16 0.20 0.91 16 3 O -0.29 -4.96 9.36 -19.68 -0.18 -5.14 16 4 C 0.12 1.99 6.66 -39.24 -0.26 1.73 16 5 C -0.18 -2.44 9.03 -39.45 -0.36 -2.79 16 6 C -0.18 -2.25 9.03 -39.45 -0.36 -2.61 16 7 C 0.08 1.18 6.69 -39.24 -0.26 0.92 16 8 O -0.32 -4.18 10.50 -19.67 -0.21 -4.39 16 9 C 0.03 0.26 9.81 101.05 0.99 1.25 16 10 C -0.11 -1.68 8.57 -39.45 -0.34 -2.02 16 11 C -0.06 -0.95 4.59 -104.49 -0.48 -1.43 16 12 C 0.10 1.86 4.56 -4.97 -0.02 1.84 16 13 N -0.52 -11.64 4.69 -237.51 -1.11 -12.75 16 14 C 0.06 1.23 5.63 -3.82 -0.02 1.21 16 15 C -0.19 -3.56 9.25 37.16 0.34 -3.22 16 16 C 0.19 5.00 4.50 -4.97 -0.02 4.98 16 17 C -0.50 -14.16 8.41 -34.44 -0.29 -14.45 16 18 H 0.06 1.76 7.33 -52.49 -0.38 1.37 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 29 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 30 H 0.13 1.40 6.29 -52.49 -0.33 1.07 16 31 H 0.12 1.23 6.29 -52.49 -0.33 0.90 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 35 H 0.13 2.00 7.74 -52.49 -0.41 1.60 16 36 H 0.04 0.67 5.96 -51.93 -0.31 0.36 16 37 H 0.08 1.61 7.63 -51.93 -0.40 1.21 16 38 H 0.08 1.73 6.97 -51.93 -0.36 1.37 16 39 H 0.05 0.99 6.46 -51.93 -0.34 0.65 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.77 6.02 -51.93 -0.31 0.46 16 42 H 0.07 1.51 6.31 -51.93 -0.33 1.18 16 43 H 0.00 0.07 6.01 -51.93 -0.31 -0.25 16 44 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -31.74 357.23 -8.05 -39.79 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.06 Total: -0.01 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.59 Total: -13.60 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.38 Total: -38.99 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.39 Total: -9.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.74 -8.05 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232384171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.801 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds