Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47318 * 2 1 4 4 C 1.35981 * 117.00275 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.99743 * 359.72280 * 4 3 2 6 6 C 1.38113 * 119.99732 * 179.71882 * 5 4 3 7 7 C 1.38722 * 119.99705 * 0.55981 * 6 5 4 8 8 O 1.35979 * 119.99670 * 179.69952 * 7 6 5 9 9 C 1.42897 * 117.00329 * 0.02562 * 8 7 6 10 10 C 1.38673 * 120.00257 * 359.71673 * 7 6 5 11 11 C 1.38153 * 119.99941 * 0.02562 * 10 7 6 12 12 C 1.50700 * 119.99896 * 179.97438 * 11 10 7 13 13 N 1.46907 * 109.46776 * 260.01631 * 12 11 10 14 14 C 1.46902 * 110.99934 * 66.04613 * 13 12 11 15 15 C 1.53004 * 109.47121 * 63.28622 * 14 13 12 16 16 C 1.46905 * 110.99795 * 190.00212 * 13 12 11 17 17 C 1.50703 * 109.46858 * 169.60338 * 16 13 12 18 18 H 1.07994 * 120.00194 * 354.96280 * 17 16 13 19 19 C 1.37876 * 119.99967 * 174.96325 * 17 16 13 20 20 N 1.31518 * 119.99823 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 90.00328 * 21 19 17 23 23 H 1.48505 * 109.47251 * 210.00014 * 21 19 17 24 24 H 1.48502 * 109.47313 * 330.00398 * 21 19 17 25 25 H 1.08998 * 109.46738 * 299.99578 * 1 2 3 26 26 H 1.08993 * 109.47105 * 59.99631 * 1 2 3 27 27 H 1.08995 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47472 * 239.99851 * 2 1 3 29 29 H 1.09003 * 109.47410 * 119.99939 * 2 1 3 30 30 H 1.07999 * 119.99786 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.99670 * 180.25751 * 6 5 4 32 32 H 1.08997 * 109.47750 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47074 * 300.00229 * 9 8 7 34 34 H 1.09001 * 109.47349 * 59.99655 * 9 8 7 35 35 H 1.07995 * 120.00185 * 180.02562 * 10 7 6 36 36 H 1.08999 * 109.47599 * 20.01662 * 12 11 10 37 37 H 1.09000 * 109.47525 * 140.01768 * 12 11 10 38 38 H 1.08998 * 109.46740 * 183.27920 * 14 13 12 39 39 H 1.09000 * 109.46871 * 303.28655 * 14 13 12 40 40 H 1.08997 * 109.47124 * 180.63412 * 15 14 13 41 41 H 1.09004 * 109.46970 * 300.63180 * 15 14 13 42 42 H 1.09001 * 109.47062 * 60.62777 * 15 14 13 43 43 H 1.08999 * 109.46525 * 289.59716 * 16 13 12 44 44 H 1.08994 * 109.47470 * 49.60081 * 16 13 12 45 45 H 0.97000 * 119.99947 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1995 0.4253 0.0048 6 6 5.5687 0.6062 -0.0017 7 6 6.0989 1.8881 -0.0017 8 8 7.4470 2.0663 -0.0018 9 6 8.2570 0.8891 -0.0025 10 6 5.2542 2.9879 -0.0012 11 6 3.8846 2.8069 -0.0001 12 6 2.9666 4.0020 0.0010 13 7 2.4790 4.2436 1.3656 14 6 3.5778 4.6460 2.2537 15 6 4.1620 5.9755 1.7721 16 6 1.4040 5.2448 1.3710 17 6 0.7585 5.2814 2.7322 18 1 1.0555 4.5715 3.4900 19 6 -0.2114 6.2210 3.0102 20 7 -0.5735 7.0852 2.0873 21 14 -1.0121 6.2659 4.6972 22 1 -0.2371 7.1652 5.5893 23 1 -2.4028 6.7715 4.5719 24 1 -1.0331 4.8967 5.2719 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.7867 -0.5727 0.0089 31 1 6.2266 -0.2503 -0.0018 32 1 9.3096 1.1721 -0.0021 33 1 8.0398 0.2980 0.8872 34 1 8.0395 0.2988 -0.8927 35 1 5.6669 3.9859 -0.0016 36 1 3.5107 4.8785 -0.3509 37 1 2.1202 3.8108 -0.6587 38 1 3.1999 4.7619 3.2695 39 1 4.3546 3.8815 2.2399 40 1 4.9846 6.2685 2.4244 41 1 4.5296 5.8627 0.7521 42 1 3.3880 6.7426 1.7965 43 1 1.8199 6.2255 1.1396 44 1 0.6577 4.9807 0.6219 45 1 -1.2562 7.7460 2.2827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232384171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = -66.037317 kcal Electronic energy + Delta-G solvation = -24320.927691 eV Core-core repulsion = 20917.596659 eV Total energy + Delta-G solvation = -3403.331032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49704 -39.88330 -38.98111 -37.15423 -34.75146 -32.97211 -32.34368 -31.15204 -30.31190 -28.66006 -27.84623 -26.13103 -24.96299 -24.85678 -22.53540 -22.40876 -20.86551 -18.94927 -18.47050 -18.22866 -17.63738 -17.06019 -16.72360 -16.48928 -16.37326 -15.91345 -15.67777 -15.24049 -14.80931 -14.70753 -14.29112 -14.05519 -13.98731 -13.53943 -13.45744 -13.19068 -13.12108 -13.03008 -12.88557 -12.72563 -12.64840 -12.48329 -12.38608 -12.25834 -11.93927 -11.89943 -11.49359 -11.46542 -11.19971 -11.14438 -10.57029 -9.88472 -8.83308 -8.58639 -8.15299 -6.24530 0.27411 0.55907 1.40768 1.42172 1.53823 2.38750 2.42751 2.53093 2.73865 3.16514 3.55444 3.76863 3.80802 4.12451 4.13285 4.19894 4.28409 4.30318 4.38235 4.39546 4.43575 4.47160 4.53085 4.59898 4.67068 4.73469 4.79466 4.81347 4.94291 4.99022 4.99840 5.03749 5.20354 5.25759 5.27135 5.33522 5.40436 5.42519 5.52388 5.70084 5.71632 6.12537 6.43405 6.48101 6.67706 6.73815 6.92014 7.44271 8.95107 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.004638 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.715628 B = 6035.727515 C = 7306.306190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.327 6.327 4 C 0.101 3.899 5 C -0.171 4.171 6 C -0.164 4.164 7 C 0.082 3.918 8 O -0.337 6.337 9 C 0.019 3.981 10 C -0.117 4.117 11 C -0.079 4.079 12 C 0.104 3.896 13 N -0.529 5.529 14 C 0.065 3.935 15 C -0.177 4.177 16 C 0.208 3.792 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.267 1.267 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.035 0.965 43 H -0.019 1.019 44 H -0.008 1.008 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 -17.234 -5.455 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.242 6.242 4 C 0.056 3.944 5 C -0.189 4.189 6 C -0.182 4.182 7 C 0.037 3.963 8 O -0.251 6.251 9 C -0.075 4.075 10 C -0.136 4.136 11 C -0.080 4.080 12 C -0.023 4.023 13 N -0.253 5.253 14 C -0.063 4.063 15 C -0.236 4.236 16 C 0.082 3.918 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.194 4.194 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.192 1.192 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.054 0.946 43 H -0.001 1.001 44 H 0.011 0.989 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.832 -17.226 -5.309 22.721 hybrid contribution -0.445 0.937 0.336 1.091 sum 13.387 -16.289 -4.972 21.663 Atomic orbital electron populations 1.21778 0.92693 1.03783 1.02432 1.22977 0.96255 0.81313 1.02029 1.86246 1.18858 1.30501 1.88551 1.18870 0.83083 0.93592 0.98901 1.21256 0.93464 0.98379 1.05846 1.21262 0.95586 0.96266 1.05127 1.18836 0.83222 0.93585 1.00661 1.86050 1.13974 1.35720 1.89394 1.23316 0.95263 0.86765 1.02199 1.20137 0.90504 0.98513 1.04465 1.18926 0.92801 0.92693 1.03578 1.20732 0.96272 0.93840 0.91468 1.62220 1.09694 1.46005 1.07335 1.21914 0.92451 0.94900 0.97038 1.22259 1.00704 0.99123 1.01504 1.19389 0.88413 0.88001 0.96030 1.21390 1.20425 1.14905 0.98530 0.92529 1.25843 0.97419 0.95060 1.01126 1.70091 1.32220 1.19785 1.35456 0.85449 0.77583 0.78538 0.79444 1.19820 1.20706 1.19166 0.93473 0.92469 0.87613 0.90423 0.91426 0.82770 0.82252 0.86572 0.91857 0.91572 0.85126 0.94417 0.92168 0.92466 0.91072 0.90950 0.92468 0.94583 1.00126 0.98949 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 10.28 71.98 0.74 -2.69 16 2 C 0.05 1.17 5.46 71.98 0.39 1.56 16 3 O -0.33 -11.28 9.36 -93.33 -0.87 -12.15 16 4 C 0.10 3.28 6.66 22.49 0.15 3.43 16 5 C -0.17 -4.18 9.03 22.36 0.20 -3.98 16 6 C -0.16 -3.61 9.03 22.36 0.20 -3.41 16 7 C 0.08 2.15 6.69 22.49 0.15 2.30 16 8 O -0.34 -7.88 10.50 -93.32 -0.98 -8.86 16 9 C 0.02 0.25 9.81 113.37 1.11 1.36 16 10 C -0.12 -3.59 8.57 22.35 0.19 -3.40 16 11 C -0.08 -2.73 4.59 -19.78 -0.09 -2.82 16 12 C 0.10 4.26 4.56 85.56 0.39 4.65 16 13 N -0.53 -24.72 4.69 -905.33 -4.25 -28.96 16 14 C 0.07 2.73 5.63 86.30 0.49 3.21 16 15 C -0.18 -6.81 9.25 71.98 0.67 -6.14 16 16 C 0.21 11.61 4.50 85.56 0.38 12.00 16 17 C -0.51 -30.31 8.41 25.60 0.22 -30.10 16 18 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 19 C 0.00 0.18 5.46 84.65 0.46 0.65 16 20 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 21 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 29 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 30 H 0.15 2.81 6.29 -2.91 -0.02 2.79 16 31 H 0.16 2.33 6.29 -2.91 -0.02 2.31 16 32 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.70 7.66 -2.38 -0.02 0.69 16 34 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 35 H 0.13 3.91 7.74 -2.91 -0.02 3.89 16 36 H 0.04 1.49 5.96 -2.39 -0.01 1.47 16 37 H 0.06 2.62 7.63 -2.39 -0.02 2.60 16 38 H 0.06 2.61 6.97 -2.39 -0.02 2.59 16 39 H 0.07 2.70 6.46 -2.39 -0.02 2.69 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.06 2.02 6.02 -2.38 -0.01 2.00 16 42 H 0.04 1.61 6.31 -2.39 -0.02 1.60 16 43 H -0.02 -1.12 6.01 -2.39 -0.01 -1.13 16 44 H -0.01 -0.46 7.92 -2.39 -0.02 -0.48 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -71.54 357.23 2.84 -68.70 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.97 Total: 14.36 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.66 Total: -23.40 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -3.96 Total: -86.36 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.85 Total: -21.02 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.54 2.84 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232384171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.665 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds