Wall clock time and date at job start Tue Mar 31 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47481 * 2 1 4 4 C 1.46898 * 111.00079 * 299.33126 * 3 2 1 5 5 C 1.50697 * 109.47503 * 293.56047 * 4 3 2 6 6 H 1.07999 * 119.99605 * 354.95613 * 5 4 3 7 7 C 1.37873 * 120.00229 * 174.96611 * 5 4 3 8 8 N 1.31513 * 120.00236 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47126 * 90.00004 * 9 7 5 11 11 H 1.48500 * 109.47413 * 209.99955 * 9 7 5 12 12 H 1.48496 * 109.47296 * 330.00272 * 9 7 5 13 13 C 1.46908 * 111.00092 * 63.28683 * 3 2 1 14 14 C 1.50697 * 109.46733 * 66.04528 * 13 3 2 15 15 C 1.38153 * 120.00092 * 259.99602 * 14 13 3 16 16 C 1.38671 * 119.99945 * 179.97438 * 15 14 13 17 17 O 1.35985 * 120.00085 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99783 * 0.02562 * 17 16 15 19 19 C 1.38718 * 120.00180 * 0.02562 * 16 15 14 20 20 C 1.50697 * 120.00122 * 179.97438 * 19 16 15 21 21 C 1.38111 * 119.99879 * 359.97438 * 19 16 15 22 22 C 1.38676 * 119.99694 * 79.73011 * 14 13 3 23 23 O 1.35980 * 120.00531 * 359.97438 * 22 14 13 24 24 C 1.42899 * 117.00313 * 180.02562 * 23 22 14 25 25 H 1.09003 * 109.47330 * 180.63546 * 1 2 3 26 26 H 1.08998 * 109.46617 * 300.63232 * 1 2 3 27 27 H 1.08998 * 109.47033 * 60.62959 * 1 2 3 28 28 H 1.09007 * 109.46984 * 239.99727 * 2 1 3 29 29 H 1.09005 * 109.46861 * 120.00458 * 2 1 3 30 30 H 1.09004 * 109.47307 * 53.55993 * 4 3 2 31 31 H 1.09000 * 109.47547 * 173.55311 * 4 3 2 32 32 H 0.97000 * 120.00675 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.46628 * 306.04963 * 13 3 2 34 34 H 1.08997 * 109.46659 * 186.04575 * 13 3 2 35 35 H 1.07993 * 119.99893 * 359.96395 * 15 14 13 36 36 H 1.08999 * 109.47093 * 299.99769 * 18 17 16 37 37 H 1.09002 * 109.47133 * 59.99679 * 18 17 16 38 38 H 1.09004 * 109.46897 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47530 * 90.00095 * 20 19 16 40 40 H 1.09002 * 109.47329 * 209.99731 * 20 19 16 41 41 H 1.09007 * 109.47539 * 329.99863 * 20 19 16 42 42 H 1.08000 * 119.99686 * 179.97438 * 21 19 16 43 43 H 1.08994 * 109.46887 * 300.00068 * 24 23 22 44 44 H 1.08996 * 109.46882 * 60.00207 * 24 23 22 45 45 H 1.09001 * 109.47100 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5619 2.1052 -1.1956 5 6 2.2050 1.5064 -2.4199 6 1 2.9469 0.7288 -2.3144 7 6 1.8463 1.9515 -3.6745 8 7 0.9425 2.8982 -3.8030 9 14 2.6439 1.2097 -5.1921 10 1 1.8472 0.0432 -5.6501 11 1 2.6962 2.2280 -6.2717 12 1 4.0225 0.7681 -4.8610 13 6 1.6140 2.0868 1.2251 14 6 2.3016 1.4633 2.4123 15 6 1.6209 0.5658 3.2121 16 6 2.2538 -0.0083 4.3042 17 8 1.5836 -0.8913 5.0918 18 6 0.2307 -1.1817 4.7350 19 6 3.5704 0.3189 4.5940 20 6 4.2580 -0.3045 5.7811 21 6 4.2509 1.2162 3.7944 22 6 3.6195 1.7863 2.6987 23 8 4.2915 2.6651 1.9080 24 6 5.6462 2.9513 2.2616 25 1 -0.3634 -1.0276 0.0114 26 1 -0.3632 0.5236 0.8843 27 1 -0.3633 0.5040 -0.8956 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.4781 2.0221 -1.2771 31 1 1.8406 3.1559 -1.1158 32 1 0.6904 3.2116 -4.6856 33 1 0.5339 2.0080 1.3481 34 1 1.8958 3.1372 1.1522 35 1 0.5958 0.3115 2.9869 36 1 -0.3564 -0.2636 4.7591 37 1 0.2025 -1.6048 3.7309 38 1 -0.1858 -1.8984 5.4428 39 1 4.7469 -1.2290 5.4738 40 1 5.0032 0.3872 6.1741 41 1 3.5214 -0.5229 6.5545 42 1 5.2758 1.4712 4.0203 43 1 5.6778 3.3764 3.2647 44 1 6.2298 2.0310 2.2383 45 1 6.0643 3.6643 1.5510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232833115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:58 Heat of formation + Delta-G solvation = -46.132702 kcal Electronic energy + Delta-G solvation = -24527.868880 eV Core-core repulsion = 21125.400977 eV Total energy + Delta-G solvation = -3402.467903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47651 -38.78405 -37.31855 -36.10926 -33.19523 -32.26700 -29.67888 -29.29176 -28.34340 -27.69266 -27.04479 -25.69172 -23.85195 -22.87619 -21.79721 -21.03970 -19.29339 -17.32444 -17.12336 -16.78804 -16.09630 -15.82498 -15.34164 -14.88356 -14.74839 -14.58184 -14.47724 -13.99901 -13.45295 -13.29441 -13.11115 -12.88872 -12.75857 -12.34383 -12.03363 -12.01664 -11.77584 -11.70378 -11.43978 -11.40000 -11.29784 -11.02414 -10.82928 -10.75308 -10.52392 -10.34314 -10.08749 -9.97625 -9.66558 -9.13615 -8.60449 -8.36591 -7.41247 -7.03699 -5.96092 -3.96208 1.39590 1.69036 3.34984 3.35201 3.41176 3.46133 3.64928 3.85755 4.48740 4.81917 4.85206 5.02881 5.14084 5.15338 5.21281 5.26930 5.34576 5.37969 5.40151 5.41374 5.55947 5.65184 5.68059 5.71134 5.80358 5.83960 5.91340 6.05060 6.07313 6.21943 6.28610 6.38489 6.43390 6.52927 6.67406 6.77066 6.85912 6.99113 7.41363 7.42603 7.51288 7.75982 7.89649 8.19904 8.31861 8.65652 9.12186 9.67359 11.14568 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.004454 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.914526 B = 6285.146099 C = 7233.516784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 N -0.522 5.522 4 C 0.190 3.810 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.096 3.904 14 C -0.061 4.061 15 C -0.159 4.159 16 C 0.082 3.918 17 O -0.319 6.319 18 C 0.028 3.972 19 C -0.087 4.087 20 C -0.101 4.101 21 C -0.179 4.179 22 C 0.121 3.879 23 O -0.293 6.293 24 C 0.029 3.971 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.002 0.998 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -4.810 18.608 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.068 4.068 3 N -0.245 5.245 4 C 0.065 3.935 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.032 4.032 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.038 3.962 17 O -0.233 6.233 18 C -0.067 4.067 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.198 4.198 22 C 0.075 3.925 23 O -0.206 6.206 24 C -0.067 4.067 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.662 -4.692 18.430 19.367 hybrid contribution -0.583 -0.316 -0.981 1.184 sum 3.079 -5.008 17.450 18.413 Atomic orbital electron populations 1.22398 0.99698 1.00661 1.01961 1.21956 0.91821 0.91810 1.01172 1.62331 1.59142 1.01600 1.01448 1.19778 0.94315 0.93679 0.85714 1.21149 1.22209 1.20501 0.89944 0.92020 1.24959 0.95340 0.95304 0.98992 1.69957 1.31986 1.28831 1.23292 0.86552 0.79860 0.78705 0.82620 1.20859 1.21353 1.19833 1.20870 0.95576 0.98263 0.88452 1.19112 0.91752 0.97988 0.97336 1.20960 1.00756 1.00022 0.96107 1.18574 0.91965 0.93537 0.92124 1.86008 1.26135 1.59417 1.51740 1.22993 0.81093 1.00932 1.01704 1.18872 0.91536 0.99517 0.98910 1.20567 0.99843 1.00078 0.95279 1.20887 1.00485 1.01529 0.96900 1.18666 0.91685 0.91833 0.90300 1.86282 1.25206 1.58476 1.50620 1.22989 0.81730 1.00969 1.00968 0.93651 0.93953 0.91114 0.90344 0.93122 0.98057 0.95687 0.93074 0.94896 0.90286 0.85218 0.92926 0.92687 0.88660 0.91549 0.92047 0.91289 0.85188 0.93452 0.93072 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.25 37.16 0.34 -3.11 16 2 C 0.06 1.23 5.63 -3.83 -0.02 1.21 16 3 N -0.52 -11.61 4.69 -237.52 -1.11 -12.73 16 4 C 0.19 4.99 4.50 -4.98 -0.02 4.97 16 5 C -0.50 -14.17 8.41 -34.44 -0.29 -14.46 16 6 H 0.06 1.76 7.33 -52.49 -0.38 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.10 1.86 4.56 -4.97 -0.02 1.84 16 14 C -0.06 -1.04 4.59 -104.49 -0.48 -1.52 16 15 C -0.16 -2.40 7.62 -39.45 -0.30 -2.70 16 16 C 0.08 1.18 6.66 -39.24 -0.26 0.92 16 17 O -0.32 -4.10 9.54 -19.69 -0.19 -4.28 16 18 C 0.03 0.27 9.81 101.05 0.99 1.26 16 19 C -0.09 -1.19 5.89 -104.49 -0.62 -1.80 16 20 C -0.10 -1.07 9.79 36.00 0.35 -0.72 16 21 C -0.18 -2.49 8.69 -39.45 -0.34 -2.84 16 22 C 0.12 2.00 6.66 -39.24 -0.26 1.74 16 23 O -0.29 -5.01 9.73 -19.68 -0.19 -5.20 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.71 6.02 -51.93 -0.31 0.39 16 27 H 0.07 1.50 6.31 -51.93 -0.33 1.18 16 28 H 0.08 1.73 6.97 -51.93 -0.36 1.36 16 29 H 0.05 0.95 6.46 -51.93 -0.34 0.61 16 30 H 0.00 0.05 6.01 -51.93 -0.31 -0.27 16 31 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 34 H 0.08 1.59 7.64 -51.93 -0.40 1.20 16 35 H 0.13 1.79 5.97 -52.49 -0.31 1.47 16 36 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 42 H 0.13 1.48 6.29 -52.49 -0.33 1.15 16 43 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 44 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -31.89 355.45 -7.48 -39.37 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.02 Total: -0.83 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.04 Total: -12.41 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.38 Total: -38.90 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.38 Total: -9.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.89 -7.48 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232833115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.762 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds