Wall clock time and date at job start Tue Mar 31 2020 06:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47481 * 2 1 4 4 C 1.46898 * 111.00079 * 299.33126 * 3 2 1 5 5 C 1.50697 * 109.47503 * 293.56047 * 4 3 2 6 6 H 1.07999 * 119.99605 * 354.95613 * 5 4 3 7 7 C 1.37873 * 120.00229 * 174.96611 * 5 4 3 8 8 N 1.31513 * 120.00236 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47126 * 90.00004 * 9 7 5 11 11 H 1.48500 * 109.47413 * 209.99955 * 9 7 5 12 12 H 1.48496 * 109.47296 * 330.00272 * 9 7 5 13 13 C 1.46908 * 111.00092 * 63.28683 * 3 2 1 14 14 C 1.50697 * 109.46733 * 66.04528 * 13 3 2 15 15 C 1.38153 * 120.00092 * 259.99602 * 14 13 3 16 16 C 1.38671 * 119.99945 * 179.97438 * 15 14 13 17 17 O 1.35985 * 120.00085 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99783 * 0.02562 * 17 16 15 19 19 C 1.38718 * 120.00180 * 0.02562 * 16 15 14 20 20 C 1.50697 * 120.00122 * 179.97438 * 19 16 15 21 21 C 1.38111 * 119.99879 * 359.97438 * 19 16 15 22 22 C 1.38676 * 119.99694 * 79.73011 * 14 13 3 23 23 O 1.35980 * 120.00531 * 359.97438 * 22 14 13 24 24 C 1.42899 * 117.00313 * 180.02562 * 23 22 14 25 25 H 1.09003 * 109.47330 * 180.63546 * 1 2 3 26 26 H 1.08998 * 109.46617 * 300.63232 * 1 2 3 27 27 H 1.08998 * 109.47033 * 60.62959 * 1 2 3 28 28 H 1.09007 * 109.46984 * 239.99727 * 2 1 3 29 29 H 1.09005 * 109.46861 * 120.00458 * 2 1 3 30 30 H 1.09004 * 109.47307 * 53.55993 * 4 3 2 31 31 H 1.09000 * 109.47547 * 173.55311 * 4 3 2 32 32 H 0.97000 * 120.00675 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.46628 * 306.04963 * 13 3 2 34 34 H 1.08997 * 109.46659 * 186.04575 * 13 3 2 35 35 H 1.07993 * 119.99893 * 359.96395 * 15 14 13 36 36 H 1.08999 * 109.47093 * 299.99769 * 18 17 16 37 37 H 1.09002 * 109.47133 * 59.99679 * 18 17 16 38 38 H 1.09004 * 109.46897 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.47530 * 90.00095 * 20 19 16 40 40 H 1.09002 * 109.47329 * 209.99731 * 20 19 16 41 41 H 1.09007 * 109.47539 * 329.99863 * 20 19 16 42 42 H 1.08000 * 119.99686 * 179.97438 * 21 19 16 43 43 H 1.08994 * 109.46887 * 300.00068 * 24 23 22 44 44 H 1.08996 * 109.46882 * 60.00207 * 24 23 22 45 45 H 1.09001 * 109.47100 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5619 2.1052 -1.1956 5 6 2.2050 1.5064 -2.4199 6 1 2.9469 0.7288 -2.3144 7 6 1.8463 1.9515 -3.6745 8 7 0.9425 2.8982 -3.8030 9 14 2.6439 1.2097 -5.1921 10 1 1.8472 0.0432 -5.6501 11 1 2.6962 2.2280 -6.2717 12 1 4.0225 0.7681 -4.8610 13 6 1.6140 2.0868 1.2251 14 6 2.3016 1.4633 2.4123 15 6 1.6209 0.5658 3.2121 16 6 2.2538 -0.0083 4.3042 17 8 1.5836 -0.8913 5.0918 18 6 0.2307 -1.1817 4.7350 19 6 3.5704 0.3189 4.5940 20 6 4.2580 -0.3045 5.7811 21 6 4.2509 1.2162 3.7944 22 6 3.6195 1.7863 2.6987 23 8 4.2915 2.6651 1.9080 24 6 5.6462 2.9513 2.2616 25 1 -0.3634 -1.0276 0.0114 26 1 -0.3632 0.5236 0.8843 27 1 -0.3633 0.5040 -0.8956 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.4781 2.0221 -1.2771 31 1 1.8406 3.1559 -1.1158 32 1 0.6904 3.2116 -4.6856 33 1 0.5339 2.0080 1.3481 34 1 1.8958 3.1372 1.1522 35 1 0.5958 0.3115 2.9869 36 1 -0.3564 -0.2636 4.7591 37 1 0.2025 -1.6048 3.7309 38 1 -0.1858 -1.8984 5.4428 39 1 4.7469 -1.2290 5.4738 40 1 5.0032 0.3872 6.1741 41 1 3.5214 -0.5229 6.5545 42 1 5.2758 1.4712 4.0203 43 1 5.6778 3.3764 3.2647 44 1 6.2298 2.0310 2.2383 45 1 6.0643 3.6643 1.5510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232833115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:57 Heat of formation + Delta-G solvation = -66.722454 kcal Electronic energy + Delta-G solvation = -24528.761719 eV Core-core repulsion = 21125.400977 eV Total energy + Delta-G solvation = -3403.360742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59279 -39.84301 -38.93411 -37.23765 -34.91770 -33.89710 -31.22617 -30.38986 -29.91384 -28.60561 -28.21160 -27.18592 -25.28297 -24.72801 -22.86154 -22.28592 -20.94175 -18.46569 -18.36415 -18.12447 -17.88985 -16.98223 -16.68495 -16.40804 -16.27850 -15.89541 -15.62481 -15.50033 -14.76248 -14.51413 -14.29853 -14.18527 -13.89359 -13.83791 -13.34650 -13.22314 -13.13321 -13.05459 -12.74206 -12.63617 -12.57910 -12.47601 -12.39288 -12.34667 -12.30002 -11.96061 -11.55449 -11.46632 -11.19884 -11.11600 -10.58002 -9.73567 -8.84600 -8.53046 -8.16277 -6.25761 0.25951 0.55671 1.40263 1.41672 1.53380 2.41264 2.43187 2.61052 2.70960 3.15465 3.51271 3.73444 3.81843 4.04273 4.12396 4.26113 4.35944 4.38748 4.41713 4.43011 4.47378 4.52422 4.57332 4.65286 4.69187 4.72660 4.77066 4.79313 4.88566 4.91332 4.97370 4.99373 5.11512 5.20754 5.26985 5.38253 5.40195 5.50036 5.55306 5.69763 5.74690 6.11424 6.41731 6.43918 6.65423 6.72654 6.90864 7.43253 8.93949 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.004454 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.914526 B = 6285.146099 C = 7233.516784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.065 3.935 3 N -0.531 5.531 4 C 0.208 3.792 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.105 3.895 14 C -0.088 4.088 15 C -0.159 4.159 16 C 0.078 3.922 17 O -0.323 6.323 18 C 0.019 3.981 19 C -0.088 4.088 20 C -0.099 4.099 21 C -0.174 4.174 22 C 0.104 3.896 23 O -0.330 6.330 24 C 0.021 3.979 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.070 0.930 30 H -0.018 1.018 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -6.607 20.210 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.063 4.063 3 N -0.255 5.255 4 C 0.082 3.918 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.022 4.022 14 C -0.089 4.089 15 C -0.178 4.178 16 C 0.033 3.967 17 O -0.238 6.238 18 C -0.075 4.075 19 C -0.089 4.089 20 C -0.155 4.155 21 C -0.193 4.193 22 C 0.058 3.942 23 O -0.244 6.244 24 C -0.073 4.073 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.088 0.912 30 H -0.001 1.001 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.174 0.826 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.592 -6.502 20.059 21.580 hybrid contribution -0.868 0.231 -1.352 1.623 sum 3.723 -6.271 18.707 20.079 Atomic orbital electron populations 1.22259 0.98171 1.02237 1.00888 1.21905 0.93066 0.90383 1.00916 1.62202 1.59634 1.02454 1.01173 1.19385 0.92836 0.92204 0.87381 1.21391 1.22302 1.20530 0.91129 0.92563 1.25834 0.95750 0.95566 1.02225 1.70083 1.33193 1.30016 1.24235 0.85451 0.79025 0.78101 0.78452 1.19769 1.20709 1.19220 1.20721 0.96063 0.97166 0.88261 1.18966 0.92638 0.99933 0.97343 1.20998 1.01122 0.99552 0.96176 1.18721 0.92496 0.93553 0.91881 1.86012 1.27552 1.58769 1.51450 1.23267 0.79701 1.01926 1.02645 1.19334 0.91468 0.98680 0.99391 1.20629 1.00195 1.00709 0.93971 1.21138 1.01561 1.00831 0.95737 1.18890 0.91729 0.92357 0.91245 1.86227 1.27435 1.58917 1.51819 1.23246 0.79735 1.01834 1.02534 0.90746 0.92404 0.94627 0.92565 0.91164 1.00070 0.99022 0.92802 0.94446 0.92387 0.84326 0.92431 0.92708 0.85905 0.90650 0.90005 0.91054 0.82571 0.91097 0.92021 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.47 9.25 71.98 0.67 -5.81 16 2 C 0.07 2.67 5.63 86.31 0.49 3.16 16 3 N -0.53 -24.54 4.69 -905.38 -4.25 -28.79 16 4 C 0.21 11.53 4.50 85.56 0.38 11.91 16 5 C -0.52 -30.19 8.41 25.60 0.22 -29.97 16 6 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.11 4.23 4.56 85.55 0.39 4.62 16 14 C -0.09 -3.01 4.59 -19.78 -0.09 -3.10 16 15 C -0.16 -4.64 7.62 22.35 0.17 -4.47 16 16 C 0.08 2.09 6.66 22.49 0.15 2.24 16 17 O -0.32 -7.48 9.54 -93.38 -0.89 -8.37 16 18 C 0.02 0.32 9.81 113.37 1.11 1.43 16 19 C -0.09 -2.17 5.89 -19.78 -0.12 -2.29 16 20 C -0.10 -1.75 9.79 71.23 0.70 -1.06 16 21 C -0.17 -4.50 8.69 22.36 0.19 -4.31 16 22 C 0.10 3.39 6.66 22.49 0.15 3.54 16 23 O -0.33 -11.45 9.73 -93.33 -0.91 -12.35 16 24 C 0.02 0.48 9.81 113.37 1.11 1.60 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.91 6.02 -2.39 -0.01 1.89 16 27 H 0.03 1.55 6.31 -2.39 -0.02 1.53 16 28 H 0.06 2.52 6.97 -2.38 -0.02 2.50 16 29 H 0.07 2.59 6.46 -2.38 -0.02 2.57 16 30 H -0.02 -1.07 6.01 -2.39 -0.01 -1.09 16 31 H -0.01 -0.51 7.92 -2.39 -0.02 -0.52 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.04 1.43 5.96 -2.39 -0.01 1.42 16 34 H 0.06 2.51 7.64 -2.39 -0.02 2.49 16 35 H 0.14 3.63 5.97 -2.91 -0.02 3.61 16 36 H 0.06 0.90 7.66 -2.39 -0.02 0.89 16 37 H 0.05 0.92 7.66 -2.39 -0.02 0.90 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 41 H 0.07 1.26 7.53 -2.38 -0.02 1.24 16 42 H 0.16 3.07 6.29 -2.91 -0.02 3.06 16 43 H 0.07 1.26 7.65 -2.39 -0.02 1.24 16 44 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 45 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.79 355.45 3.23 -67.56 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.98 Total: 13.33 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.98 Total: -21.81 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.96 Total: -85.80 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.80 Total: -20.73 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.79 3.23 -67.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232833115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.841 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds