Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47529 * 2 1 4 4 C 1.42899 * 114.00333 * 186.94069 * 3 2 1 5 5 O 1.42894 * 109.47533 * 285.26607 * 4 3 2 6 6 C 1.42901 * 114.00132 * 86.25565 * 5 4 3 7 7 C 1.53000 * 109.47450 * 173.23249 * 6 5 4 8 8 C 1.50701 * 109.47358 * 165.26096 * 4 3 2 9 9 C 1.38237 * 119.99535 * 359.73117 * 8 4 3 10 10 C 1.38236 * 119.99441 * 179.76061 * 9 8 4 11 11 C 1.38230 * 120.00475 * 0.48870 * 10 9 8 12 12 C 1.50702 * 120.00521 * 179.76497 * 11 10 9 13 13 N 1.46503 * 109.46948 * 270.02450 * 12 11 10 14 14 C 1.46498 * 120.00331 * 89.99911 * 13 12 11 15 15 C 1.36937 * 119.99974 * 269.99691 * 13 12 11 16 16 H 1.07996 * 120.00294 * 140.58894 * 15 13 12 17 17 C 1.38820 * 119.99843 * 320.59403 * 15 13 12 18 18 N 1.31612 * 119.99685 * 161.41707 * 17 15 13 19 19 Si 1.86793 * 119.99992 * 341.41804 * 17 15 13 20 20 H 1.48500 * 109.47299 * 91.76212 * 19 17 15 21 21 H 1.48503 * 109.47027 * 211.76253 * 19 17 15 22 22 H 1.48503 * 109.47310 * 331.76282 * 19 17 15 23 23 C 1.38246 * 119.99579 * 359.78899 * 11 10 9 24 24 C 1.38228 * 120.00117 * 359.95719 * 23 11 10 25 25 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46987 * 300.00434 * 1 2 3 27 27 H 1.09004 * 109.46964 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47640 * 239.99832 * 2 1 3 29 29 H 1.09004 * 109.46964 * 120.00054 * 2 1 3 30 30 H 1.09006 * 109.47033 * 45.26512 * 4 3 2 31 31 H 1.09003 * 109.47112 * 293.22636 * 6 5 4 32 32 H 1.08998 * 109.47562 * 53.22718 * 6 5 4 33 33 H 1.08998 * 109.47171 * 59.99229 * 7 6 5 34 34 H 1.09000 * 109.47635 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.46883 * 300.00107 * 7 6 5 36 36 H 1.07999 * 120.00053 * 359.97438 * 9 8 4 37 37 H 1.08004 * 119.99661 * 180.25427 * 10 9 8 38 38 H 1.08996 * 109.46525 * 30.02314 * 12 11 10 39 39 H 1.08994 * 109.47131 * 150.02375 * 12 11 10 40 40 H 1.08995 * 109.47549 * 95.04181 * 14 13 12 41 41 H 1.08998 * 109.47322 * 215.04756 * 14 13 12 42 42 H 1.09005 * 109.47178 * 335.04566 * 14 13 12 43 43 H 0.97002 * 120.00001 * 179.97438 * 18 17 15 44 44 H 1.07994 * 119.99722 * 179.97438 * 23 11 10 45 45 H 1.07995 * 120.00111 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4219 1.4632 -0.1577 5 8 4.0689 1.0963 1.0623 6 6 4.3127 -0.3058 1.1921 7 6 5.1524 -0.5637 2.4448 8 6 3.7738 2.8870 -0.5045 9 6 2.7756 3.8355 -0.6262 10 6 3.0988 5.1426 -0.9394 11 6 4.4191 5.4989 -1.1408 12 6 4.7709 6.9227 -1.4875 13 7 4.7594 7.0880 -2.9431 14 6 3.5254 7.4852 -3.6255 15 6 5.9021 6.8712 -3.6659 16 1 5.8493 6.3746 -4.6234 17 6 7.1283 7.2897 -3.1677 18 7 8.2426 6.7814 -3.6497 19 14 7.1970 8.5743 -1.8133 20 1 7.2126 7.8989 -0.4908 21 1 8.4281 9.3903 -1.9669 22 1 6.0047 9.4549 -1.9052 23 6 5.4167 4.5490 -1.0247 24 6 5.0941 3.2431 -0.7064 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7537 0.8018 -0.9581 31 1 3.3627 -0.8335 1.2766 32 1 4.8504 -0.6639 0.3142 33 1 4.6148 -0.2055 3.3227 34 1 5.3389 -1.6331 2.5436 35 1 6.1025 -0.0359 2.3604 36 1 1.7436 3.5562 -0.4732 37 1 2.3193 5.8846 -1.0304 38 1 4.0409 7.5966 -1.0394 39 1 5.7640 7.1554 -1.1032 40 1 3.5187 8.5663 -3.7642 41 1 3.4731 6.9938 -4.5970 42 1 2.6661 7.1911 -3.0228 43 1 9.0995 7.0741 -3.3019 44 1 6.4482 4.8273 -1.1825 45 1 5.8735 2.5012 -0.6153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234892112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -42.891031 kcal Electronic energy + Delta-G solvation = -23901.567154 eV Core-core repulsion = 20499.239820 eV Total energy + Delta-G solvation = -3402.327334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77509 -38.39981 -36.48727 -35.70544 -32.65461 -31.66469 -30.88669 -30.63667 -30.28134 -27.12584 -25.97246 -23.99598 -23.53534 -22.63747 -21.89637 -21.24566 -20.24172 -17.58100 -17.51616 -16.96538 -16.33369 -15.44777 -15.35006 -14.94747 -14.64783 -14.32121 -13.87839 -13.80866 -13.69757 -13.19641 -12.97974 -12.86670 -12.78587 -12.61726 -12.22914 -12.14420 -12.07819 -11.95239 -11.90093 -11.48489 -11.31456 -11.25993 -10.76681 -10.68814 -10.59756 -10.29957 -10.09147 -9.85491 -9.76422 -9.59142 -8.55787 -8.32601 -8.07825 -6.81002 -6.00401 -3.44903 1.75951 2.01585 3.29105 3.36042 3.45486 3.50615 3.67241 4.32676 4.50184 4.60724 4.69845 4.84885 4.92182 4.97645 5.01040 5.14406 5.21297 5.24666 5.36821 5.40514 5.45749 5.49076 5.59046 5.64852 5.71712 5.72603 5.87583 5.91677 5.99391 6.06508 6.26847 6.31530 6.38254 6.55023 6.65267 6.72079 6.73022 6.82127 6.96793 7.07913 7.17485 7.36487 7.57515 8.04863 8.38230 8.95719 9.68149 10.09837 11.14774 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003915 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.006984 B = 7150.369532 C = 7989.449137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.383 6.383 4 C 0.297 3.703 5 O -0.382 6.382 6 C 0.041 3.959 7 C -0.151 4.151 8 C -0.108 4.108 9 C -0.089 4.089 10 C -0.125 4.125 11 C -0.066 4.066 12 C 0.162 3.838 13 N -0.604 5.604 14 C 0.126 3.874 15 C -0.265 4.265 16 H 0.078 0.922 17 C 0.037 3.963 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.269 1.269 23 C -0.097 4.097 24 C -0.093 4.093 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.011 0.989 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.127 0.873 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -14.467 9.705 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.203 3.797 5 O -0.303 6.303 6 C -0.035 4.035 7 C -0.208 4.208 8 C -0.109 4.109 9 C -0.107 4.107 10 C -0.144 4.144 11 C -0.069 4.069 12 C 0.037 3.963 13 N -0.327 5.327 14 C -0.019 4.019 15 C -0.394 4.394 16 H 0.095 0.905 17 C -0.164 4.164 18 N -0.541 5.541 19 Si 0.710 3.290 20 H -0.210 1.210 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.116 4.116 24 C -0.111 4.111 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.145 0.855 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.679 -14.128 9.801 20.786 hybrid contribution 0.311 0.075 0.463 0.562 sum -11.369 -14.053 10.264 20.786 Atomic orbital electron populations 1.21745 0.93566 1.02121 1.03349 1.22749 0.96055 0.84212 1.00017 1.88037 1.22723 1.26301 1.93324 1.21670 0.78126 0.94344 0.85576 1.88154 1.77803 1.23157 1.41167 1.22837 0.98925 0.82770 0.98938 1.21740 1.00508 1.01469 0.97064 1.18977 0.94252 0.92058 1.05629 1.20801 0.98885 0.92304 0.98723 1.20966 0.95954 0.95785 1.01696 1.21001 0.92923 0.99076 0.93882 1.20378 1.00025 0.89806 0.86115 1.44036 1.08392 1.79031 1.01281 1.21078 0.87679 0.96780 0.96331 1.18803 0.83413 1.32993 1.04211 0.90473 1.25479 0.95347 0.97516 0.98054 1.69836 0.97490 1.42403 1.44407 0.86938 0.76891 0.83419 0.81730 1.20970 1.22870 1.19355 1.21069 1.00176 0.92116 0.98250 1.20740 0.94597 0.96614 0.99199 0.91232 0.91715 0.91698 0.93450 0.92731 0.92134 0.92900 0.93235 0.91795 0.91223 0.91593 0.85837 0.86651 0.93180 0.91902 0.97034 0.94285 0.94943 0.92636 0.85489 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.46 6.01 37.16 0.22 0.68 16 3 O -0.38 -5.30 8.72 -59.04 -0.51 -5.82 16 4 C 0.30 4.31 3.11 36.01 0.11 4.43 16 5 O -0.38 -5.49 10.08 -59.04 -0.59 -6.08 16 6 C 0.04 0.43 6.20 37.16 0.23 0.66 16 7 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 8 C -0.11 -1.86 5.56 -104.62 -0.58 -2.44 16 9 C -0.09 -1.52 9.38 -39.58 -0.37 -1.89 16 10 C -0.13 -2.26 9.70 -39.58 -0.38 -2.64 16 11 C -0.07 -1.35 5.46 -104.62 -0.57 -1.92 16 12 C 0.16 3.60 4.57 -5.19 -0.02 3.57 16 13 N -0.60 -14.66 2.45 -182.50 -0.45 -15.10 16 14 C 0.13 2.58 10.69 59.85 0.64 3.22 16 15 C -0.27 -7.46 9.96 -15.06 -0.15 -7.61 16 16 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 17 C 0.04 1.05 5.35 -17.43 -0.09 0.95 16 18 N -0.90 -27.14 13.97 55.49 0.78 -26.37 16 19 Si 0.88 22.17 25.00 -169.99 -4.25 17.92 16 20 H -0.28 -6.84 6.56 56.52 0.37 -6.47 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.10 -2.02 9.70 -39.58 -0.38 -2.40 16 24 C -0.09 -1.69 9.61 -39.59 -0.38 -2.07 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.42 7.98 -51.93 -0.41 0.01 16 29 H 0.05 0.50 5.36 -51.93 -0.28 0.23 16 30 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 31 H 0.05 0.47 5.07 -51.93 -0.26 0.21 16 32 H 0.05 0.46 7.93 -51.93 -0.41 0.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.12 1.93 7.01 -52.49 -0.37 1.56 16 37 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 39 H 0.06 1.51 3.06 -51.93 -0.16 1.35 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 45 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -31.59 362.46 -7.89 -39.48 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.35 Total: -0.21 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.97 Total: -9.28 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.33 Total: -41.47 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.11 Total: -11.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.25 Total: 17.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.59 -7.89 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234892112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.410 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds