Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47529 * 2 1 4 4 C 1.42899 * 114.00333 * 186.94069 * 3 2 1 5 5 O 1.42894 * 109.47533 * 285.26607 * 4 3 2 6 6 C 1.42901 * 114.00132 * 86.25565 * 5 4 3 7 7 C 1.53000 * 109.47450 * 173.23249 * 6 5 4 8 8 C 1.50701 * 109.47358 * 165.26096 * 4 3 2 9 9 C 1.38237 * 119.99535 * 359.73117 * 8 4 3 10 10 C 1.38236 * 119.99441 * 179.76061 * 9 8 4 11 11 C 1.38230 * 120.00475 * 0.48870 * 10 9 8 12 12 C 1.50702 * 120.00521 * 179.76497 * 11 10 9 13 13 N 1.46503 * 109.46948 * 270.02450 * 12 11 10 14 14 C 1.46498 * 120.00331 * 89.99911 * 13 12 11 15 15 C 1.36937 * 119.99974 * 269.99691 * 13 12 11 16 16 H 1.07996 * 120.00294 * 140.58894 * 15 13 12 17 17 C 1.38820 * 119.99843 * 320.59403 * 15 13 12 18 18 N 1.31612 * 119.99685 * 161.41707 * 17 15 13 19 19 Si 1.86793 * 119.99992 * 341.41804 * 17 15 13 20 20 H 1.48500 * 109.47299 * 91.76212 * 19 17 15 21 21 H 1.48503 * 109.47027 * 211.76253 * 19 17 15 22 22 H 1.48503 * 109.47310 * 331.76282 * 19 17 15 23 23 C 1.38246 * 119.99579 * 359.78899 * 11 10 9 24 24 C 1.38228 * 120.00117 * 359.95719 * 23 11 10 25 25 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46987 * 300.00434 * 1 2 3 27 27 H 1.09004 * 109.46964 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47640 * 239.99832 * 2 1 3 29 29 H 1.09004 * 109.46964 * 120.00054 * 2 1 3 30 30 H 1.09006 * 109.47033 * 45.26512 * 4 3 2 31 31 H 1.09003 * 109.47112 * 293.22636 * 6 5 4 32 32 H 1.08998 * 109.47562 * 53.22718 * 6 5 4 33 33 H 1.08998 * 109.47171 * 59.99229 * 7 6 5 34 34 H 1.09000 * 109.47635 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.46883 * 300.00107 * 7 6 5 36 36 H 1.07999 * 120.00053 * 359.97438 * 9 8 4 37 37 H 1.08004 * 119.99661 * 180.25427 * 10 9 8 38 38 H 1.08996 * 109.46525 * 30.02314 * 12 11 10 39 39 H 1.08994 * 109.47131 * 150.02375 * 12 11 10 40 40 H 1.08995 * 109.47549 * 95.04181 * 14 13 12 41 41 H 1.08998 * 109.47322 * 215.04756 * 14 13 12 42 42 H 1.09005 * 109.47178 * 335.04566 * 14 13 12 43 43 H 0.97002 * 120.00001 * 179.97438 * 18 17 15 44 44 H 1.07994 * 119.99722 * 179.97438 * 23 11 10 45 45 H 1.07995 * 120.00111 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4219 1.4632 -0.1577 5 8 4.0689 1.0963 1.0623 6 6 4.3127 -0.3058 1.1921 7 6 5.1524 -0.5637 2.4448 8 6 3.7738 2.8870 -0.5045 9 6 2.7756 3.8355 -0.6262 10 6 3.0988 5.1426 -0.9394 11 6 4.4191 5.4989 -1.1408 12 6 4.7709 6.9227 -1.4875 13 7 4.7594 7.0880 -2.9431 14 6 3.5254 7.4852 -3.6255 15 6 5.9021 6.8712 -3.6659 16 1 5.8493 6.3746 -4.6234 17 6 7.1283 7.2897 -3.1677 18 7 8.2426 6.7814 -3.6497 19 14 7.1970 8.5743 -1.8133 20 1 7.2126 7.8989 -0.4908 21 1 8.4281 9.3903 -1.9669 22 1 6.0047 9.4549 -1.9052 23 6 5.4167 4.5490 -1.0247 24 6 5.0941 3.2431 -0.7064 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7537 0.8018 -0.9581 31 1 3.3627 -0.8335 1.2766 32 1 4.8504 -0.6639 0.3142 33 1 4.6148 -0.2055 3.3227 34 1 5.3389 -1.6331 2.5436 35 1 6.1025 -0.0359 2.3604 36 1 1.7436 3.5562 -0.4732 37 1 2.3193 5.8846 -1.0304 38 1 4.0409 7.5966 -1.0394 39 1 5.7640 7.1554 -1.1032 40 1 3.5187 8.5663 -3.7642 41 1 3.4731 6.9938 -4.5970 42 1 2.6661 7.1911 -3.0228 43 1 9.0995 7.0741 -3.3019 44 1 6.4482 4.8273 -1.1825 45 1 5.8735 2.5012 -0.6153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234892112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -60.970942 kcal Electronic energy + Delta-G solvation = -23902.351158 eV Core-core repulsion = 20499.239820 eV Total energy + Delta-G solvation = -3403.111338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94157 -39.71079 -37.47863 -37.41542 -34.07389 -33.40606 -31.93156 -31.87294 -31.47045 -28.62153 -27.84879 -25.34939 -24.38062 -23.67043 -23.06605 -23.02397 -21.75221 -18.93240 -18.54632 -18.46394 -17.70667 -17.28892 -16.31350 -16.11650 -15.95652 -15.73898 -15.52336 -15.15530 -14.87681 -14.68272 -14.50660 -14.23418 -13.96903 -13.79908 -13.45980 -13.39849 -13.24950 -13.01663 -12.83999 -12.79214 -12.68345 -12.42611 -12.35636 -12.26830 -12.05250 -11.80877 -11.78245 -11.48621 -11.02081 -10.68060 -10.61669 -9.77146 -9.55709 -8.77071 -8.20623 -5.63287 0.33156 0.55999 1.29184 1.39396 1.50448 2.34429 2.39913 2.65285 2.95121 3.14028 3.55666 3.65906 3.83579 3.94670 3.97571 4.13338 4.14383 4.18514 4.25342 4.27574 4.33155 4.39744 4.58199 4.58952 4.68496 4.76699 4.76984 4.79640 4.88141 4.95763 5.04150 5.04266 5.07563 5.12111 5.20832 5.22630 5.25561 5.50324 5.58105 5.83113 5.93316 6.08066 6.11686 6.13752 6.16692 6.95769 7.58834 8.02089 8.98606 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003915 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.006984 B = 7150.369532 C = 7989.449137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 O -0.400 6.400 4 C 0.301 3.699 5 O -0.405 6.405 6 C 0.033 3.967 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.087 4.087 10 C -0.119 4.119 11 C -0.086 4.086 12 C 0.160 3.840 13 N -0.617 5.617 14 C 0.124 3.876 15 C -0.259 4.259 16 H 0.036 0.964 17 C -0.013 4.013 18 N -0.947 5.947 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.306 1.306 22 H -0.256 1.256 23 C -0.121 4.121 24 C -0.097 4.097 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.020 0.980 41 H 0.032 0.968 42 H 0.066 0.934 43 H 0.264 0.736 44 H 0.096 0.904 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -15.516 11.332 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 O -0.321 6.321 4 C 0.206 3.794 5 O -0.327 6.327 6 C -0.042 4.042 7 C -0.206 4.206 8 C -0.108 4.108 9 C -0.104 4.104 10 C -0.137 4.137 11 C -0.089 4.089 12 C 0.036 3.964 13 N -0.341 5.341 14 C -0.020 4.020 15 C -0.389 4.389 16 H 0.054 0.946 17 C -0.210 4.210 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.199 1.199 21 H -0.235 1.235 22 H -0.180 1.180 23 C -0.140 4.140 24 C -0.115 4.115 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.336 -15.188 11.447 23.816 hybrid contribution 1.020 0.210 -0.037 1.042 sum -13.316 -14.977 11.409 23.061 Atomic orbital electron populations 1.21768 0.92298 1.03594 1.02843 1.23021 0.97076 0.82692 1.01032 1.87990 1.21991 1.28687 1.93470 1.21487 0.78883 0.92770 0.86265 1.88112 1.77952 1.25646 1.40960 1.23111 1.00187 0.80962 0.99972 1.21773 0.99572 1.03039 0.96244 1.19341 0.93638 0.93935 1.03880 1.21070 0.99831 0.91893 0.97646 1.21179 0.95206 0.96852 1.00468 1.20886 0.94107 0.98027 0.95886 1.20392 0.99733 0.91567 0.84727 1.44154 1.08262 1.79589 1.02115 1.21198 0.87184 0.97203 0.96435 1.18626 0.85220 1.31795 1.03226 0.94599 1.26044 0.94856 0.99266 1.00813 1.69961 0.98090 1.44214 1.46829 0.85923 0.76814 0.80702 0.79505 1.19871 1.23475 1.18044 1.20974 0.99014 0.93757 1.00289 1.20823 0.95855 0.95816 0.99006 0.88806 0.92226 0.92172 0.92222 0.91873 0.90725 0.91256 0.92212 0.92270 0.88599 0.92708 0.83876 0.84048 0.90208 0.94089 0.96176 0.94908 0.91573 0.92741 0.88556 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.64 6.01 71.98 0.43 1.07 16 3 O -0.40 -10.03 8.72 -126.21 -1.10 -11.13 16 4 C 0.30 8.09 3.11 71.24 0.22 8.31 16 5 O -0.41 -10.91 10.08 -126.21 -1.27 -12.18 16 6 C 0.03 0.61 6.20 71.98 0.45 1.05 16 7 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 8 C -0.11 -3.51 5.56 -19.86 -0.11 -3.62 16 9 C -0.09 -2.74 9.38 22.27 0.21 -2.54 16 10 C -0.12 -3.98 9.70 22.27 0.22 -3.77 16 11 C -0.09 -3.49 5.46 -19.86 -0.11 -3.60 16 12 C 0.16 6.93 4.57 85.63 0.39 7.32 16 13 N -0.62 -29.64 2.45 -731.32 -1.79 -31.43 16 14 C 0.12 4.84 10.69 127.77 1.37 6.21 16 15 C -0.26 -14.97 9.96 84.04 0.84 -14.14 16 16 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 17 C -0.01 -0.76 5.35 84.87 0.45 -0.31 16 18 N -0.95 -59.49 13.97 21.65 0.30 -59.18 16 19 Si 0.94 46.60 25.00 68.60 1.72 48.32 16 20 H -0.27 -12.84 6.56 99.48 0.65 -12.19 16 21 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.12 -5.14 9.70 22.27 0.22 -4.92 16 24 C -0.10 -3.51 9.61 22.27 0.21 -3.30 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.88 7.98 -2.39 -0.02 0.86 16 29 H 0.06 0.97 5.36 -2.38 -0.01 0.95 16 30 H 0.08 1.78 7.52 -2.38 -0.02 1.76 16 31 H 0.07 1.03 5.07 -2.39 -0.01 1.02 16 32 H 0.06 0.97 7.93 -2.39 -0.02 0.95 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.14 4.00 7.01 -2.91 -0.02 3.98 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.08 2.93 8.02 -2.39 -0.02 2.91 16 39 H 0.04 1.95 3.06 -2.39 -0.01 1.94 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 42 H 0.07 2.12 8.03 -2.38 -0.02 2.10 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 45 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.12 362.46 5.02 -65.10 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.90 Total: 15.64 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 6.26 Total: -15.13 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.49 Total: -90.61 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -2.37 Total: -23.31 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.72 Total: 48.32 kcal Total: -70.12 5.02 -65.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234892112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.128 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds