Wall clock time and date at job start Tue Mar 31 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48507 * 109.47026 * 274.43828 * 3 2 1 5 5 H 1.48500 * 109.47228 * 34.43454 * 3 2 1 6 6 H 1.48501 * 109.47265 * 154.43718 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00514 * 186.70434 * 7 2 1 9 9 C 1.50703 * 120.00089 * 6.69959 * 7 2 1 10 10 C 1.53003 * 109.47323 * 185.12119 * 9 7 2 11 11 C 1.53003 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47303 * 59.99715 * 11 10 9 13 13 N 1.46901 * 109.46865 * 60.00028 * 12 11 10 14 14 C 1.46904 * 110.99810 * 148.51317 * 13 12 11 15 15 C 1.54081 * 111.72601 * 303.83529 * 14 13 12 16 16 C 1.53693 * 104.80208 * 211.98333 * 15 14 13 17 17 N 1.47022 * 107.81843 * 16.94452 * 16 15 14 18 18 C 1.47178 * 109.45744 * 0.42833 * 17 16 15 19 19 H 1.09000 * 112.81176 * 106.82519 * 18 17 16 20 20 C 1.54662 * 108.87052 * 233.04575 * 18 17 16 21 21 C 1.52392 * 103.72196 * 87.84704 * 20 18 17 22 22 O 1.21284 * 124.64558 * 196.10747 * 21 20 18 23 23 N 1.34410 * 110.41385 * 15.41998 * 21 20 18 24 24 C 1.53000 * 109.47038 * 299.99845 * 12 11 10 25 25 C 1.53003 * 109.47047 * 65.11766 * 9 7 2 26 26 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46840 * 305.12223 * 9 7 2 28 28 H 1.08999 * 109.46964 * 59.99986 * 10 9 7 29 29 H 1.08999 * 109.46726 * 299.99666 * 10 9 7 30 30 H 1.09003 * 109.46640 * 299.99656 * 11 10 9 31 31 H 1.08993 * 109.46824 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46855 * 179.97438 * 12 11 10 33 33 H 1.00902 * 110.99687 * 272.46778 * 13 12 11 34 34 H 1.09000 * 110.37313 * 93.15250 * 15 14 13 35 35 H 1.09000 * 110.46806 * 330.86308 * 15 14 13 36 36 H 1.09004 * 109.79081 * 257.36247 * 16 15 14 37 37 H 1.09001 * 109.83268 * 136.55545 * 16 15 14 38 38 H 1.00905 * 110.99747 * 123.29628 * 17 16 15 39 39 H 1.09003 * 110.47484 * 206.02664 * 20 18 17 40 40 H 1.09001 * 110.47131 * 328.62988 * 20 18 17 41 41 H 0.97000 * 124.31193 * 181.21518 * 23 21 20 42 42 H 1.08999 * 109.46656 * 179.97438 * 24 12 11 43 43 H 1.08992 * 109.47320 * 299.99914 * 24 12 11 44 44 H 1.09002 * 109.47145 * 300.00283 * 25 9 7 45 45 H 1.08992 * 109.46995 * 60.00251 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4029 2.1005 -1.3959 5 1 1.4967 2.6238 0.7917 6 1 3.5905 1.4149 0.6041 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1974 0.1087 9 6 1.2588 -2.4946 -0.1534 10 6 2.2334 -3.6632 0.0063 11 6 1.4763 -4.9837 -0.1496 12 6 0.8327 -5.0420 -1.5364 13 7 1.8775 -4.9523 -2.5652 14 6 1.4985 -5.7063 -3.7676 15 6 1.1866 -7.1797 -3.4422 16 6 1.6137 -7.9578 -4.6969 17 7 2.4918 -7.0854 -5.4901 18 6 2.6543 -5.7955 -4.8003 19 1 3.6398 -5.6784 -4.3496 20 6 2.3010 -4.6547 -5.7830 21 6 0.7964 -4.4833 -5.6120 22 8 0.0774 -3.8903 -6.3882 23 7 0.3795 -5.0941 -4.4897 24 6 -0.1419 -3.8734 -1.6960 25 6 0.6148 -2.5533 -1.5400 26 1 -0.4850 0.8400 0.0004 27 1 0.4837 -2.5609 0.6103 28 1 2.6921 -3.6214 0.9941 29 1 3.0083 -3.5969 -0.7574 30 1 0.7010 -5.0502 0.6138 31 1 2.1706 -5.8161 -0.0363 32 1 0.2938 -5.9828 -1.6475 33 1 2.0810 -3.9901 -2.7908 34 1 0.1200 -7.3104 -3.2594 35 1 1.7622 -7.5091 -2.5772 36 1 0.7340 -8.2264 -5.2819 37 1 2.1533 -8.8595 -4.4070 38 1 3.3861 -7.5238 -5.6525 39 1 2.8200 -3.7374 -5.5048 40 1 2.5512 -4.9405 -6.8047 41 1 -0.5441 -5.1253 -4.1950 42 1 -0.6000 -3.9148 -2.6842 43 1 -0.9171 -3.9400 -0.9327 44 1 -0.0796 -1.7208 -1.6537 45 1 1.3897 -2.4870 -2.3036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246142111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:57 Heat of formation + Delta-G solvation = -37.532438 kcal Electronic energy + Delta-G solvation = -25450.698022 eV Core-core repulsion = 22080.895805 eV Total energy + Delta-G solvation = -3369.802217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20458 -38.38163 -37.62391 -34.64126 -33.44919 -32.01557 -31.17233 -29.87010 -29.06894 -27.99517 -25.61091 -24.60195 -21.79469 -21.67509 -20.57206 -20.49920 -20.40717 -18.41636 -17.17713 -16.90799 -16.33277 -15.75403 -15.45138 -14.83794 -14.75135 -14.42506 -14.23145 -13.83971 -13.57381 -13.33495 -13.10384 -12.92146 -12.55161 -12.09823 -11.97444 -11.79359 -11.68765 -11.59168 -11.49802 -11.35871 -10.95397 -10.73592 -10.65564 -10.25309 -10.14303 -10.10534 -9.82732 -9.38988 -9.32916 -8.97811 -8.76677 -8.68237 -8.37534 -8.31000 -6.00638 -4.03386 2.76802 3.30568 3.37410 3.38400 3.40571 3.73103 3.92653 4.27983 4.44346 4.46103 4.57929 4.85779 4.96875 5.13793 5.27704 5.30639 5.39848 5.46330 5.50148 5.58861 5.61627 5.66388 5.79529 5.82553 6.07064 6.12672 6.21388 6.36160 6.45516 6.53572 6.58218 6.73398 6.82842 6.88954 7.03920 7.06749 7.08812 7.13134 7.23160 7.41100 7.51816 7.73880 7.98216 8.04735 8.37393 8.46469 9.01783 9.61107 11.07742 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.004829 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.737793 B = 5797.285257 C = 6375.993608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C -0.102 4.102 12 C 0.089 3.911 13 N -0.658 5.658 14 C 0.309 3.691 15 C -0.136 4.136 16 C 0.055 3.945 17 N -0.676 5.676 18 C 0.081 3.919 19 H 0.101 0.899 20 C -0.145 4.145 21 C 0.528 3.472 22 O -0.541 6.541 23 N -0.735 5.735 24 C -0.148 4.148 25 C -0.099 4.099 26 H 0.259 0.741 27 H 0.029 0.971 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.358 0.642 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.346 0.654 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.404 0.596 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -16.586 -7.009 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.020 4.020 13 N -0.295 5.295 14 C 0.132 3.868 15 C -0.175 4.175 16 C -0.074 4.074 17 N -0.305 5.305 18 C -0.031 4.031 19 H 0.119 0.881 20 C -0.186 4.186 21 C 0.314 3.686 22 O -0.417 6.417 23 N -0.395 5.395 24 C -0.187 4.187 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.244 0.756 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.912 -16.434 -7.626 18.535 hybrid contribution -0.174 1.325 0.569 1.453 sum 3.738 -15.109 -7.058 17.090 Atomic orbital electron populations 1.69942 1.05902 1.26387 1.50596 1.24966 0.94755 0.98991 0.95154 0.86694 0.80044 0.83970 0.77975 1.20780 1.21375 1.19915 1.21210 0.93452 0.90910 1.49625 0.92794 1.18659 0.93769 0.91825 0.92802 1.21567 0.98791 0.93968 1.00030 1.21530 0.99199 0.98968 0.94355 1.21589 0.90801 0.97459 0.92127 1.61245 1.41330 1.20010 1.06925 1.22218 0.85238 0.91929 0.87446 1.22689 1.02739 0.92996 0.99114 1.22356 0.97568 0.94949 0.92553 1.61306 1.18236 1.03774 1.47222 1.22885 0.98257 0.90209 0.91722 0.88108 1.22675 0.93846 0.99376 1.02682 1.21046 0.90846 0.76479 0.80200 1.90731 1.61839 1.42885 1.46276 1.47145 1.10817 1.56404 1.25141 1.22322 0.98667 0.97694 1.00000 1.21489 0.98466 0.94424 0.99348 0.93128 0.95323 0.93729 0.92866 0.92570 0.93067 0.91851 0.81770 0.90422 0.89078 0.90836 0.92415 0.83789 0.87827 0.87275 0.75626 0.93967 0.92126 0.90616 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.00 55.43 0.67 -24.73 16 2 C 0.06 1.72 5.24 -17.82 -0.09 1.63 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.72 8.49 -34.44 -0.29 -14.01 16 8 H 0.05 1.43 7.76 -52.49 -0.41 1.03 16 9 C 0.05 1.12 1.97 -91.77 -0.18 0.94 16 10 C -0.11 -2.04 4.94 -26.73 -0.13 -2.18 16 11 C -0.10 -1.61 5.64 -26.73 -0.15 -1.76 16 12 C 0.09 1.29 2.63 -67.71 -0.18 1.11 16 13 N -0.66 -8.72 5.56 -94.37 -0.53 -9.25 16 14 C 0.31 3.49 1.01 -189.26 -0.19 3.30 16 15 C -0.14 -1.26 4.70 -25.81 -0.12 -1.38 16 16 C 0.06 0.45 7.58 -3.40 -0.03 0.43 16 17 N -0.68 -5.88 6.87 -103.87 -0.71 -6.59 16 18 C 0.08 0.80 4.29 -65.49 -0.28 0.52 16 19 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.14 -1.69 6.58 -26.17 -0.17 -1.86 16 21 C 0.53 8.11 8.45 -10.31 -0.09 8.02 16 22 O -0.54 -10.61 18.03 5.55 0.10 -10.51 16 23 N -0.74 -9.69 4.72 -48.13 -0.23 -9.91 16 24 C -0.15 -2.57 5.46 -26.75 -0.15 -2.72 16 25 C -0.10 -2.16 4.79 -26.75 -0.13 -2.28 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.76 8.12 -51.92 -0.42 0.33 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 1.02 7.38 -51.93 -0.38 0.63 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.80 6.15 -51.93 -0.32 0.49 16 33 H 0.36 5.54 5.89 -39.29 -0.23 5.31 16 34 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.35 2.28 8.90 -39.29 -0.35 1.93 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 41 H 0.40 5.34 7.69 -40.82 -0.31 5.03 16 42 H 0.04 0.70 5.89 -51.93 -0.31 0.39 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.94 6.76 -51.93 -0.35 1.59 16 45 H 0.03 0.68 6.21 -51.93 -0.32 0.36 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -30.23 337.96 -9.97 -40.20 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.17 Total: 9.75 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.18 Total: -10.25 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.80 Total: -50.48 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.10 Total: -10.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.23 -9.97 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds