Wall clock time and date at job start Tue Mar 31 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48507 * 109.47026 * 274.43828 * 3 2 1 5 5 H 1.48500 * 109.47228 * 34.43454 * 3 2 1 6 6 H 1.48501 * 109.47265 * 154.43718 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00514 * 186.70434 * 7 2 1 9 9 C 1.50703 * 120.00089 * 6.69959 * 7 2 1 10 10 C 1.53003 * 109.47323 * 185.12119 * 9 7 2 11 11 C 1.53003 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47303 * 59.99715 * 11 10 9 13 13 N 1.46901 * 109.46865 * 60.00028 * 12 11 10 14 14 C 1.46904 * 110.99810 * 148.51317 * 13 12 11 15 15 C 1.54081 * 111.72601 * 303.83529 * 14 13 12 16 16 C 1.53693 * 104.80208 * 211.98333 * 15 14 13 17 17 N 1.47022 * 107.81843 * 16.94452 * 16 15 14 18 18 C 1.47178 * 109.45744 * 0.42833 * 17 16 15 19 19 H 1.09000 * 112.81176 * 106.82519 * 18 17 16 20 20 C 1.54662 * 108.87052 * 233.04575 * 18 17 16 21 21 C 1.52392 * 103.72196 * 87.84704 * 20 18 17 22 22 O 1.21284 * 124.64558 * 196.10747 * 21 20 18 23 23 N 1.34410 * 110.41385 * 15.41998 * 21 20 18 24 24 C 1.53000 * 109.47038 * 299.99845 * 12 11 10 25 25 C 1.53003 * 109.47047 * 65.11766 * 9 7 2 26 26 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46840 * 305.12223 * 9 7 2 28 28 H 1.08999 * 109.46964 * 59.99986 * 10 9 7 29 29 H 1.08999 * 109.46726 * 299.99666 * 10 9 7 30 30 H 1.09003 * 109.46640 * 299.99656 * 11 10 9 31 31 H 1.08993 * 109.46824 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.46855 * 179.97438 * 12 11 10 33 33 H 1.00902 * 110.99687 * 272.46778 * 13 12 11 34 34 H 1.09000 * 110.37313 * 93.15250 * 15 14 13 35 35 H 1.09000 * 110.46806 * 330.86308 * 15 14 13 36 36 H 1.09004 * 109.79081 * 257.36247 * 16 15 14 37 37 H 1.09001 * 109.83268 * 136.55545 * 16 15 14 38 38 H 1.00905 * 110.99747 * 123.29628 * 17 16 15 39 39 H 1.09003 * 110.47484 * 206.02664 * 20 18 17 40 40 H 1.09001 * 110.47131 * 328.62988 * 20 18 17 41 41 H 0.97000 * 124.31193 * 181.21518 * 23 21 20 42 42 H 1.08999 * 109.46656 * 179.97438 * 24 12 11 43 43 H 1.08992 * 109.47320 * 299.99914 * 24 12 11 44 44 H 1.09002 * 109.47145 * 300.00283 * 25 9 7 45 45 H 1.08992 * 109.46995 * 60.00251 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4029 2.1005 -1.3959 5 1 1.4967 2.6238 0.7917 6 1 3.5905 1.4149 0.6041 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1974 0.1087 9 6 1.2588 -2.4946 -0.1534 10 6 2.2334 -3.6632 0.0063 11 6 1.4763 -4.9837 -0.1496 12 6 0.8327 -5.0420 -1.5364 13 7 1.8775 -4.9523 -2.5652 14 6 1.4985 -5.7063 -3.7676 15 6 1.1866 -7.1797 -3.4422 16 6 1.6137 -7.9578 -4.6969 17 7 2.4918 -7.0854 -5.4901 18 6 2.6543 -5.7955 -4.8003 19 1 3.6398 -5.6784 -4.3496 20 6 2.3010 -4.6547 -5.7830 21 6 0.7964 -4.4833 -5.6120 22 8 0.0774 -3.8903 -6.3882 23 7 0.3795 -5.0941 -4.4897 24 6 -0.1419 -3.8734 -1.6960 25 6 0.6148 -2.5533 -1.5400 26 1 -0.4850 0.8400 0.0004 27 1 0.4837 -2.5609 0.6103 28 1 2.6921 -3.6214 0.9941 29 1 3.0083 -3.5969 -0.7574 30 1 0.7010 -5.0502 0.6138 31 1 2.1706 -5.8161 -0.0363 32 1 0.2938 -5.9828 -1.6475 33 1 2.0810 -3.9901 -2.7908 34 1 0.1200 -7.3104 -3.2594 35 1 1.7622 -7.5091 -2.5772 36 1 0.7340 -8.2264 -5.2819 37 1 2.1533 -8.8595 -4.4070 38 1 3.3861 -7.5238 -5.6525 39 1 2.8200 -3.7374 -5.5048 40 1 2.5512 -4.9405 -6.8047 41 1 -0.5441 -5.1253 -4.1950 42 1 -0.6000 -3.9148 -2.6842 43 1 -0.9171 -3.9400 -0.9327 44 1 -0.0796 -1.7208 -1.6537 45 1 1.3897 -2.4870 -2.3036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246142111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:57 Heat of formation + Delta-G solvation = -60.769672 kcal Electronic energy + Delta-G solvation = -25451.705664 eV Core-core repulsion = 22080.895805 eV Total energy + Delta-G solvation = -3370.809859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19433 -39.78151 -38.77690 -35.83194 -34.95614 -33.47287 -32.20891 -31.38443 -30.50613 -28.94346 -26.80489 -26.21179 -23.24396 -22.90257 -21.78489 -21.64646 -21.39047 -19.73049 -18.39735 -18.25706 -17.86137 -16.92050 -16.61990 -16.33050 -15.86327 -15.69053 -15.41997 -15.00654 -14.94835 -14.60166 -14.44101 -13.95838 -13.86362 -13.60485 -13.43946 -13.10662 -12.87462 -12.81397 -12.69290 -12.54350 -12.37214 -12.25062 -12.02147 -11.81595 -11.75237 -11.71159 -11.10263 -11.04667 -10.66106 -10.58028 -10.43017 -10.35908 -9.60034 -9.41079 -8.11429 -6.20413 1.37813 1.40082 1.49059 1.58952 2.34140 2.42606 2.89613 3.02949 3.19124 3.42258 3.56656 3.77690 4.00761 4.08756 4.10465 4.23743 4.26988 4.36407 4.53350 4.61497 4.66474 4.73522 4.80192 4.86959 4.89388 4.92020 4.95345 5.00567 5.04098 5.17388 5.25988 5.28767 5.40482 5.49998 5.64287 5.67506 5.74249 5.87541 5.92285 6.06080 6.11215 6.16705 6.29471 6.43311 6.53942 6.94939 7.21945 7.47430 8.95690 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.004829 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.737793 B = 5797.285257 C = 6375.993608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.097 4.097 11 C -0.096 4.096 12 C 0.100 3.900 13 N -0.650 5.650 14 C 0.300 3.700 15 C -0.131 4.131 16 C 0.058 3.942 17 N -0.682 5.682 18 C 0.092 3.908 19 H 0.119 0.881 20 C -0.141 4.141 21 C 0.515 3.485 22 O -0.595 6.595 23 N -0.730 5.730 24 C -0.139 4.139 25 C -0.087 4.087 26 H 0.257 0.743 27 H -0.010 1.010 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.345 0.655 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.361 0.639 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.402 0.598 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.028 0.972 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -19.041 -7.199 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.009 4.009 13 N -0.285 5.285 14 C 0.124 3.876 15 C -0.171 4.171 16 C -0.071 4.071 17 N -0.314 5.314 18 C -0.019 4.019 19 H 0.136 0.864 20 C -0.182 4.182 21 C 0.303 3.697 22 O -0.476 6.476 23 N -0.387 5.387 24 C -0.178 4.178 25 C -0.126 4.126 26 H 0.066 0.934 27 H 0.009 0.991 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.241 0.759 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.836 -18.938 -7.788 21.292 hybrid contribution -0.772 2.093 0.651 2.324 sum 5.064 -16.845 -7.138 18.983 Atomic orbital electron populations 1.70080 1.07290 1.26854 1.51841 1.25710 0.95467 1.02271 0.95177 0.85754 0.79161 0.80140 0.77899 1.20575 1.21356 1.18867 1.21656 0.93608 0.92563 1.48830 0.92966 1.18627 0.93537 0.92656 0.92438 1.21409 0.98065 0.94240 0.99737 1.21480 0.99348 0.97572 0.94981 1.21501 0.90345 0.97047 0.92025 1.61248 1.40533 1.19191 1.07515 1.22542 0.85283 0.92716 0.87029 1.22710 1.03239 0.91012 1.00127 1.22350 0.97514 0.95516 0.91714 1.61201 1.19409 1.03519 1.47229 1.22834 0.98328 0.90221 0.90510 0.86352 1.22718 0.90970 1.00623 1.03858 1.21757 0.92313 0.75627 0.80000 1.90693 1.63448 1.45256 1.48183 1.47257 1.11290 1.55590 1.24588 1.22221 0.98789 0.96759 1.00048 1.21221 0.97690 0.95312 0.98339 0.93422 0.99141 0.94469 0.92399 0.92847 0.90077 0.88798 0.83217 0.90130 0.87921 0.91704 0.89900 0.82069 0.87304 0.86535 0.75939 0.93257 0.93161 0.95308 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 12.00 21.45 0.26 -54.28 16 2 C 0.01 0.67 5.24 84.65 0.44 1.11 16 3 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -28.76 8.49 25.60 0.22 -28.54 16 8 H 0.05 2.79 7.76 -2.91 -0.02 2.77 16 9 C 0.05 2.20 1.97 -11.54 -0.02 2.18 16 10 C -0.10 -3.64 4.94 30.60 0.15 -3.49 16 11 C -0.10 -2.76 5.64 30.60 0.17 -2.59 16 12 C 0.10 2.63 2.63 44.92 0.12 2.75 16 13 N -0.65 -15.43 5.56 -452.47 -2.52 -17.95 16 14 C 0.30 5.93 1.01 89.14 0.09 6.02 16 15 C -0.13 -1.92 4.70 31.19 0.15 -1.77 16 16 C 0.06 0.73 7.58 86.51 0.66 1.38 16 17 N -0.68 -9.45 6.87 -482.55 -3.32 -12.76 16 18 C 0.09 1.55 4.29 46.20 0.20 1.74 16 19 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 20 C -0.14 -3.05 6.58 30.96 0.20 -2.85 16 21 C 0.52 15.62 8.45 88.26 0.75 16.37 16 22 O -0.60 -23.93 18.03 -3.04 -0.05 -23.98 16 23 N -0.73 -18.32 4.72 -424.77 -2.01 -20.32 16 24 C -0.14 -4.80 5.46 30.58 0.17 -4.63 16 25 C -0.09 -3.90 4.79 30.58 0.15 -3.75 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H -0.01 -0.53 8.12 -2.38 -0.02 -0.55 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.12 7.38 -2.39 -0.02 2.10 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.00 6.15 -2.39 -0.01 1.99 16 33 H 0.35 10.06 5.89 -89.69 -0.53 9.53 16 34 H 0.08 1.16 7.73 -2.39 -0.02 1.15 16 35 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.36 3.28 8.90 -89.69 -0.80 2.48 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.12 2.35 8.08 -2.39 -0.02 2.33 16 41 H 0.40 10.26 7.69 -92.71 -0.71 9.54 16 42 H 0.05 1.62 5.89 -2.39 -0.01 1.61 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.03 1.53 6.76 -2.39 -0.02 1.52 16 45 H 0.03 1.41 6.21 -2.39 -0.01 1.40 16 Total: -1.00 -68.77 337.96 -3.20 -71.97 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -1.02 Total: 27.15 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 3.43 Total: -16.07 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -7.58 Total: -105.32 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.77 -3.20 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.197 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds