Wall clock time and date at job start Tue Mar 31 2020 06:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48492 * 109.47329 * 269.99824 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.99979 * 3 2 1 6 6 H 1.48502 * 109.47006 * 149.99686 * 3 2 1 7 7 C 1.37878 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00021 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00384 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47447 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47331 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46606 * 299.99775 * 11 10 9 13 13 N 1.46901 * 109.46892 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99740 * 108.20295 * 13 12 11 15 15 C 1.49622 * 107.29672 * 69.89612 * 14 13 12 16 16 C 1.56023 * 102.75689 * 77.29877 * 15 14 13 17 17 N 1.50062 * 106.17185 * 5.00894 * 16 15 14 18 18 C 1.45389 * 103.32842 * 27.78096 * 17 16 15 19 19 H 1.08999 * 112.35964 * 71.67014 * 18 17 16 20 20 C 1.52337 * 122.60800 * 209.24994 * 18 17 16 21 21 C 1.53715 * 100.85782 * 146.15637 * 20 18 17 22 22 O 1.21274 * 125.67656 * 156.12981 * 21 20 18 23 23 N 1.38229 * 108.67879 * 336.62997 * 21 20 18 24 24 C 1.52994 * 109.47359 * 60.00235 * 12 11 10 25 25 C 1.52999 * 109.46906 * 300.00109 * 9 7 2 26 26 H 0.97000 * 120.00050 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46712 * 60.00118 * 9 7 2 28 28 H 1.09000 * 109.46965 * 300.00081 * 10 9 7 29 29 H 1.09002 * 109.47286 * 59.99558 * 10 9 7 30 30 H 1.08995 * 109.47028 * 59.99410 * 11 10 9 31 31 H 1.08996 * 109.47269 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.47582 * 299.99835 * 12 11 10 33 33 H 1.00902 * 111.00327 * 232.15450 * 13 12 11 34 34 H 1.09001 * 110.75936 * 195.61938 * 15 14 13 35 35 H 1.09006 * 110.75415 * 318.98456 * 15 14 13 36 36 H 1.08998 * 110.11959 * 245.83012 * 16 15 14 37 37 H 1.09006 * 110.16904 * 124.21416 * 16 15 14 38 38 H 1.00900 * 110.99828 * 268.73996 * 17 16 15 39 39 H 1.08999 * 111.14021 * 264.05174 * 20 18 17 40 40 H 1.08997 * 111.14190 * 28.25482 * 20 18 17 41 41 H 0.97001 * 126.63310 * 172.25679 * 23 21 20 42 42 H 1.09000 * 109.47231 * 179.97438 * 24 12 11 43 43 H 1.09004 * 109.47567 * 59.99745 * 24 12 11 44 44 H 1.08995 * 109.47129 * 299.99247 * 25 9 7 45 45 H 1.08996 * 109.47031 * 59.99866 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0022 12 6 6.0614 -1.9145 -1.2509 13 7 7.5304 -1.9140 -1.2506 14 6 8.0574 -2.8272 -2.2736 15 6 7.7584 -2.2205 -3.6081 16 6 8.8443 -1.1069 -3.7313 17 7 9.7335 -1.2557 -2.5318 18 6 9.6266 -2.6692 -2.2085 19 1 10.1400 -3.3004 -2.9338 20 6 9.7810 -3.2007 -0.7893 21 6 8.7929 -4.3780 -0.8119 22 8 8.8341 -5.3499 -0.0878 23 7 7.8560 -4.1507 -1.8025 24 6 5.5515 -0.4720 -1.2498 25 6 4.0210 -0.4726 -1.2504 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.6585 -3.1510 0.8875 29 1 3.6578 -3.1499 -0.8924 30 1 5.9148 -2.1235 0.8881 31 1 5.9148 -3.6643 -0.0035 32 1 5.6981 -2.4276 -2.1413 33 1 7.8918 -0.9806 -1.3785 34 1 7.8705 -2.9588 -4.4021 35 1 6.7581 -1.7875 -3.6203 36 1 8.3745 -0.1233 -3.7299 37 1 9.4218 -1.2446 -4.6455 38 1 9.4075 -0.6842 -1.7668 39 1 10.7989 -3.5452 -0.6071 40 1 9.4839 -2.4522 -0.0547 41 1 7.1781 -4.7719 -2.1116 42 1 5.9152 0.0426 -2.1392 43 1 5.9149 0.0412 -0.3594 44 1 3.6574 -0.9863 -2.1403 45 1 3.6577 0.5550 -1.2500 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246142127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:59 Heat of formation + Delta-G solvation = 13.448715 kcal Electronic energy + Delta-G solvation = -25437.086133 eV Core-core repulsion = 22069.494625 eV Total energy + Delta-G solvation = -3367.591508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.16551 -38.60428 -37.89784 -35.04175 -33.90967 -32.12562 -31.32233 -30.20928 -29.13314 -28.30302 -25.73809 -24.11017 -22.23035 -21.66157 -21.01996 -20.76354 -20.22765 -19.08475 -17.45699 -16.89683 -16.65173 -16.46930 -15.80815 -15.33710 -14.91755 -14.42672 -14.09831 -14.05480 -13.71784 -13.58821 -13.26129 -13.11032 -12.84448 -12.76160 -12.58959 -12.06027 -11.80252 -11.56300 -11.53567 -11.45458 -11.03892 -10.89800 -10.71499 -10.50018 -10.15094 -10.06802 -9.89140 -9.76849 -9.63313 -9.11533 -8.99382 -8.81334 -8.57081 -8.45477 -6.09104 -4.07755 2.37489 2.96922 3.20743 3.21609 3.33610 3.36209 3.98828 4.23384 4.25192 4.37985 4.44806 4.49208 4.79457 4.85609 4.98424 5.06732 5.15678 5.28792 5.38595 5.41428 5.49901 5.53483 5.59074 5.67233 5.84291 5.90163 6.01739 6.10443 6.14298 6.16141 6.32489 6.41569 6.54722 6.56071 6.64934 6.78988 6.85015 6.87035 6.96260 7.05520 7.19667 7.29395 7.54569 7.76917 8.11064 8.51994 8.95769 9.53754 11.04502 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.004669 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.072647 B = 5995.023445 C = 6688.832241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.099 4.099 11 C -0.100 4.100 12 C 0.097 3.903 13 N -0.705 5.705 14 C 0.263 3.737 15 C -0.165 4.165 16 C 0.043 3.957 17 N -0.650 5.650 18 C 0.057 3.943 19 H 0.110 0.890 20 C -0.125 4.125 21 C 0.547 3.453 22 O -0.518 6.518 23 N -0.703 5.703 24 C -0.131 4.131 25 C -0.115 4.115 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.339 0.661 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.344 0.656 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.409 0.591 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.467 -2.203 -8.338 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.011 4.011 13 N -0.343 5.343 14 C 0.081 3.919 15 C -0.206 4.206 16 C -0.086 4.086 17 N -0.281 5.281 18 C -0.056 4.056 19 H 0.128 0.872 20 C -0.166 4.166 21 C 0.335 3.665 22 O -0.390 6.390 23 N -0.361 5.361 24 C -0.169 4.169 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.164 0.836 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.163 -3.003 -7.706 22.721 hybrid contribution -1.392 1.254 -0.700 2.000 sum 19.770 -1.749 -8.406 21.554 Atomic orbital electron populations 1.69904 1.06310 1.26860 1.51067 1.25045 0.94676 0.99038 0.94601 0.86825 0.79957 0.83652 0.77644 1.20831 1.22604 1.19047 1.21106 0.89049 0.94365 1.50523 0.90993 1.19136 0.96357 0.91967 0.92897 1.21451 0.92455 0.98917 1.00894 1.21571 0.96478 0.98928 0.96854 1.21479 0.84657 0.96406 0.98575 1.61297 1.09628 1.13066 1.50324 1.21083 0.97456 0.83033 0.90287 1.22640 1.01473 0.99774 0.96747 1.23634 0.91669 0.98114 0.95178 1.62788 1.51683 1.04713 1.08906 1.23362 0.93367 0.91411 0.97473 0.87235 1.22315 0.99321 0.97473 0.97462 1.22316 0.80861 0.85910 0.77443 1.90737 1.74183 1.32571 1.41543 1.45353 1.36478 1.13769 1.40508 1.22028 0.99016 0.95257 1.00625 1.21929 0.91423 1.00379 1.01568 0.92731 0.95632 0.92657 0.93187 0.92336 0.93218 0.92784 0.83812 0.89983 0.89415 0.90347 0.89231 0.83604 0.88575 0.86083 0.75108 0.93630 0.91851 0.92401 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 21.68 24.37 -169.99 -4.14 17.53 16 4 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 7 C -0.51 -14.21 9.14 -34.44 -0.31 -14.52 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.02 0.34 1.69 -91.77 -0.16 0.19 16 10 C -0.10 -1.93 5.14 -26.73 -0.14 -2.07 16 11 C -0.10 -1.62 5.53 -26.73 -0.15 -1.77 16 12 C 0.10 1.32 1.73 -67.72 -0.12 1.20 16 13 N -0.70 -7.37 4.21 -97.16 -0.41 -7.78 16 14 C 0.26 2.37 1.48 -194.86 -0.29 2.08 16 15 C -0.16 -1.27 6.12 -26.78 -0.16 -1.44 16 16 C 0.04 0.29 7.14 -0.43 0.00 0.28 16 17 N -0.65 -4.76 7.52 -101.14 -0.76 -5.52 16 18 C 0.06 0.45 3.85 -66.21 -0.26 0.19 16 19 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.12 -1.14 6.39 -26.70 -0.17 -1.31 16 21 C 0.55 6.76 8.29 -7.87 -0.07 6.69 16 22 O -0.52 -8.50 18.03 5.56 0.10 -8.40 16 23 N -0.70 -7.37 5.68 -50.07 -0.28 -7.65 16 24 C -0.13 -1.99 5.03 -26.71 -0.13 -2.13 16 25 C -0.11 -2.30 4.69 -26.71 -0.13 -2.43 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.80 7.89 -51.93 -0.41 0.39 16 32 H 0.05 0.75 6.47 -51.93 -0.34 0.41 16 33 H 0.34 3.15 4.95 -39.29 -0.19 2.95 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.79 6.43 -51.93 -0.33 0.46 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.34 2.45 6.56 -39.29 -0.26 2.20 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.12 1.14 7.39 -51.93 -0.38 0.76 16 41 H 0.41 4.14 8.96 -40.82 -0.37 3.77 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -31.49 330.91 -8.99 -40.48 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.08 Total: 6.33 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.18 Total: -13.19 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.68 Total: -47.74 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.10 Total: -8.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.49 -8.99 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.930 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds