Wall clock time and date at job start Tue Mar 31 2020 06:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48492 * 109.47329 * 269.99824 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.99979 * 3 2 1 6 6 H 1.48502 * 109.47006 * 149.99686 * 3 2 1 7 7 C 1.37878 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00021 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00384 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47447 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47331 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46606 * 299.99775 * 11 10 9 13 13 N 1.46901 * 109.46892 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99740 * 108.20295 * 13 12 11 15 15 C 1.49622 * 107.29672 * 69.89612 * 14 13 12 16 16 C 1.56023 * 102.75689 * 77.29877 * 15 14 13 17 17 N 1.50062 * 106.17185 * 5.00894 * 16 15 14 18 18 C 1.45389 * 103.32842 * 27.78096 * 17 16 15 19 19 H 1.08999 * 112.35964 * 71.67014 * 18 17 16 20 20 C 1.52337 * 122.60800 * 209.24994 * 18 17 16 21 21 C 1.53715 * 100.85782 * 146.15637 * 20 18 17 22 22 O 1.21274 * 125.67656 * 156.12981 * 21 20 18 23 23 N 1.38229 * 108.67879 * 336.62997 * 21 20 18 24 24 C 1.52994 * 109.47359 * 60.00235 * 12 11 10 25 25 C 1.52999 * 109.46906 * 300.00109 * 9 7 2 26 26 H 0.97000 * 120.00050 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46712 * 60.00118 * 9 7 2 28 28 H 1.09000 * 109.46965 * 300.00081 * 10 9 7 29 29 H 1.09002 * 109.47286 * 59.99558 * 10 9 7 30 30 H 1.08995 * 109.47028 * 59.99410 * 11 10 9 31 31 H 1.08996 * 109.47269 * 180.02562 * 11 10 9 32 32 H 1.08997 * 109.47582 * 299.99835 * 12 11 10 33 33 H 1.00902 * 111.00327 * 232.15450 * 13 12 11 34 34 H 1.09001 * 110.75936 * 195.61938 * 15 14 13 35 35 H 1.09006 * 110.75415 * 318.98456 * 15 14 13 36 36 H 1.08998 * 110.11959 * 245.83012 * 16 15 14 37 37 H 1.09006 * 110.16904 * 124.21416 * 16 15 14 38 38 H 1.00900 * 110.99828 * 268.73996 * 17 16 15 39 39 H 1.08999 * 111.14021 * 264.05174 * 20 18 17 40 40 H 1.08997 * 111.14190 * 28.25482 * 20 18 17 41 41 H 0.97001 * 126.63310 * 172.25679 * 23 21 20 42 42 H 1.09000 * 109.47231 * 179.97438 * 24 12 11 43 43 H 1.09004 * 109.47567 * 59.99745 * 24 12 11 44 44 H 1.08995 * 109.47129 * 299.99247 * 25 9 7 45 45 H 1.08996 * 109.47031 * 59.99866 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0022 12 6 6.0614 -1.9145 -1.2509 13 7 7.5304 -1.9140 -1.2506 14 6 8.0574 -2.8272 -2.2736 15 6 7.7584 -2.2205 -3.6081 16 6 8.8443 -1.1069 -3.7313 17 7 9.7335 -1.2557 -2.5318 18 6 9.6266 -2.6692 -2.2085 19 1 10.1400 -3.3004 -2.9338 20 6 9.7810 -3.2007 -0.7893 21 6 8.7929 -4.3780 -0.8119 22 8 8.8341 -5.3499 -0.0878 23 7 7.8560 -4.1507 -1.8025 24 6 5.5515 -0.4720 -1.2498 25 6 4.0210 -0.4726 -1.2504 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.6585 -3.1510 0.8875 29 1 3.6578 -3.1499 -0.8924 30 1 5.9148 -2.1235 0.8881 31 1 5.9148 -3.6643 -0.0035 32 1 5.6981 -2.4276 -2.1413 33 1 7.8918 -0.9806 -1.3785 34 1 7.8705 -2.9588 -4.4021 35 1 6.7581 -1.7875 -3.6203 36 1 8.3745 -0.1233 -3.7299 37 1 9.4218 -1.2446 -4.6455 38 1 9.4075 -0.6842 -1.7668 39 1 10.7989 -3.5452 -0.6071 40 1 9.4839 -2.4522 -0.0547 41 1 7.1781 -4.7719 -2.1116 42 1 5.9152 0.0426 -2.1392 43 1 5.9149 0.0412 -0.3594 44 1 3.6574 -0.9863 -2.1403 45 1 3.6577 0.5550 -1.2500 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246142127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:59 Heat of formation + Delta-G solvation = -12.400389 kcal Electronic energy + Delta-G solvation = -25438.207034 eV Core-core repulsion = 22069.494625 eV Total energy + Delta-G solvation = -3368.712409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.92923 -39.75031 -39.11830 -35.86822 -35.38840 -33.84379 -32.15046 -31.67931 -30.32977 -29.20193 -26.66267 -25.70630 -23.66034 -22.46511 -22.19292 -21.60745 -21.12779 -20.60372 -18.78833 -18.26930 -17.72206 -17.40196 -16.86704 -16.43174 -16.07445 -15.40560 -15.22766 -15.11781 -14.98350 -14.83724 -14.73393 -14.48050 -14.19193 -13.68613 -13.49167 -13.31638 -13.09210 -12.98889 -12.71027 -12.39210 -12.21575 -12.08736 -11.99059 -11.85062 -11.68774 -11.53569 -11.29515 -11.12946 -10.94189 -10.91733 -10.60472 -10.40427 -9.61697 -9.33447 -8.30961 -6.35005 1.27378 1.35275 1.45327 1.46059 2.18577 2.31662 2.49086 3.04401 3.14842 3.56686 3.60226 3.79786 3.81442 3.87576 3.96294 4.16066 4.23581 4.31100 4.36564 4.42576 4.47508 4.65855 4.67861 4.71732 4.79801 4.83945 4.86112 4.90886 4.99333 5.02547 5.06758 5.10739 5.19157 5.32916 5.38191 5.54213 5.57864 5.67537 5.73146 5.78855 5.85594 6.09747 6.29587 6.31423 6.43972 6.72916 7.22059 7.30677 8.86468 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.004669 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.072647 B = 5995.023445 C = 6688.832241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.303 1.303 6 H -0.244 1.244 7 C -0.522 4.522 8 H 0.025 0.975 9 C 0.016 3.984 10 C -0.094 4.094 11 C -0.088 4.088 12 C 0.110 3.890 13 N -0.701 5.701 14 C 0.256 3.744 15 C -0.160 4.160 16 C 0.048 3.952 17 N -0.649 5.649 18 C 0.072 3.928 19 H 0.118 0.882 20 C -0.118 4.118 21 C 0.539 3.461 22 O -0.568 6.568 23 N -0.700 5.700 24 C -0.122 4.122 25 C -0.113 4.113 26 H 0.265 0.735 27 H 0.018 0.982 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.352 0.648 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.346 0.654 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.409 0.591 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.924 -0.293 -9.957 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.231 1.231 6 H -0.168 1.168 7 C -0.560 4.560 8 H 0.043 0.957 9 C -0.003 4.003 10 C -0.133 4.133 11 C -0.127 4.127 12 C 0.001 3.999 13 N -0.340 5.340 14 C 0.076 3.924 15 C -0.202 4.202 16 C -0.081 4.081 17 N -0.280 5.280 18 C -0.041 4.041 19 H 0.136 0.864 20 C -0.158 4.158 21 C 0.328 3.672 22 O -0.444 6.444 23 N -0.357 5.357 24 C -0.160 4.160 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.167 0.833 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.248 0.752 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 24.648 -1.079 -9.359 26.387 hybrid contribution -2.559 0.533 -0.186 2.621 sum 22.089 -0.546 -9.545 24.069 Atomic orbital electron populations 1.70074 1.08432 1.28008 1.53026 1.25977 0.95451 1.03329 0.94199 0.85730 0.79088 0.78119 0.78786 1.18763 1.23126 1.16802 1.21472 0.92056 0.92649 1.49814 0.95677 1.19087 0.92863 0.94158 0.94215 1.21345 0.95270 0.96855 0.99787 1.21424 0.93409 0.99472 0.98377 1.21181 0.86635 0.95150 0.96938 1.61125 1.07356 1.14180 1.51389 1.21317 0.98647 0.81795 0.90682 1.22633 1.01473 1.00182 0.95880 1.23688 0.91215 0.98089 0.95145 1.62810 1.51991 1.03965 1.09258 1.23309 0.91931 0.92121 0.96706 0.86408 1.22283 0.99057 0.96100 0.98382 1.22945 0.81424 0.85939 0.76862 1.90708 1.75480 1.34721 1.43519 1.45429 1.35895 1.14454 1.39890 1.21938 0.94998 0.96511 1.02550 1.21769 0.95206 0.98799 0.99338 0.92653 0.96341 0.94528 0.93759 0.92751 0.93177 0.92648 0.82356 0.89050 0.90227 0.89274 0.88140 0.83298 0.87272 0.85949 0.75181 0.90078 0.91513 0.92915 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.01 0.39 5.45 84.66 0.46 0.85 16 3 Si 0.96 44.45 24.37 68.60 1.67 46.13 16 4 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.24 -10.42 6.53 99.48 0.65 -9.77 16 7 C -0.52 -30.03 9.14 25.60 0.23 -29.80 16 8 H 0.02 1.62 7.99 -2.90 -0.02 1.59 16 9 C 0.02 0.70 1.69 -11.54 -0.02 0.68 16 10 C -0.09 -3.74 5.14 30.59 0.16 -3.58 16 11 C -0.09 -2.75 5.53 30.59 0.17 -2.58 16 12 C 0.11 2.67 1.73 44.91 0.08 2.75 16 13 N -0.70 -12.17 4.21 -461.31 -1.94 -14.11 16 14 C 0.26 3.79 1.48 90.33 0.13 3.92 16 15 C -0.16 -1.83 6.12 30.56 0.19 -1.64 16 16 C 0.05 0.40 7.14 86.73 0.62 1.02 16 17 N -0.65 -6.61 7.52 -473.90 -3.56 -10.17 16 18 C 0.07 0.88 3.85 46.70 0.18 1.06 16 19 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 20 C -0.12 -1.83 6.39 30.62 0.20 -1.63 16 21 C 0.54 12.58 8.29 88.09 0.73 13.31 16 22 O -0.57 -18.61 18.03 -3.01 -0.05 -18.67 16 23 N -0.70 -13.36 5.68 -428.68 -2.43 -15.80 16 24 C -0.12 -3.23 5.03 30.61 0.15 -3.08 16 25 C -0.11 -4.29 4.69 30.61 0.14 -4.15 16 26 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.02 0.86 7.20 -2.38 -0.02 0.85 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.56 7.89 -2.39 -0.02 1.54 16 32 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 33 H 0.35 4.87 4.95 -89.69 -0.44 4.42 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.10 6.43 -2.38 -0.02 1.08 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.35 3.31 6.56 -89.69 -0.59 2.72 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.93 7.39 -2.39 -0.02 1.91 16 41 H 0.41 7.76 8.96 -92.71 -0.83 6.92 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.43 3.27 -2.39 -0.01 1.42 16 Total: -1.00 -71.99 330.91 -3.52 -75.50 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.92 Total: 20.11 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 3.42 Total: -22.86 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -7.64 Total: -100.21 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.13 kcal Total: -71.99 -3.52 -75.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.104 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds